CsaV3_2G016600 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_2G016600
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr2: 13839395 .. 13839654 (+)
RNA-Seq Expression	CsaV3_2G016600
Synteny	CsaV3_2G016600

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGCTGTCACCAAAACCGGCGGCGCTGATCTCGAAAGAGAGCAAGAAAGAAATCCGGGTAGAGAGAGAGAGAGAGAGAGGAAACCAAACTCCCACACTCTCCTACCGGCGGCGATCTGGGAGAAGCTAAGGATGGCGGCGTTAGAGAGAAGGAAGTAAGCGGTGGCTTCGGCGTCGGCGGTGGCGTGGAAGTCGGAGGTGGGTCTTGGGTGGCCGGTCTGGTGGGAGGAAGAAAACGAAAAACGAAGGTGGAGTAG

mRNA sequence

AGAGAGAGAGAGAGAGAGGAAACCAAACTCCCACACTCTCCTACCGGCGGCGATCTGGGAGAAGCTAAGGATGGCGGCGTTAGAGAGAAGGAAGTAAGCGGTGGCTTCGGCGTCGGCGGTGGCGTGGAAGTCGGAGGTGGGTCTTGGGTGGCCGGTCTGGTGGGAGGAAGAAAACGAAAAACGAAGGTGGAGTAG

Coding sequence (CDS)

AGAGAGAGAGAGAGAGAGGAAACCAAACTCCCACACTCTCCTACCGGCGGCGATCTGGGAGAAGCTAAGGATGGCGGCGTTAGAGAGAAGGAAGTAAGCGGTGGCTTCGGCGTCGGCGGTGGCGTGGAAGTCGGAGGTGGGTCTTGGGTGGCCGGTCTGGTGGGAGGAAGAAAACGAAAAACGAAGGTGGAGTAG

Protein sequence

REREREETKLPHSPTGGDLGEAKDGGVREKEVSGGFGVGGGVEVGGGSWVAGLVGGRKRKTKVE*

Homology

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BLAST of CsaV3_2G016600 vs. NCBI nr
Match: KAE8651913.1 (hypothetical protein Csa_023621, partial [Cucumis sativus])

HSP 1 Score: 124.8 bits (312), Expect = 2.7e-25
Identity = 64/64 (100.00%), Postives = 64/64 (100.00%), Query Frame = 0


Query: 1  REREREETKLPHSPTGGDLGEAKDGGVREKEVSGGFGVGGGVEVGGGSWVAGLVGGRKRK 60
          REREREETKLPHSPTGGDLGEAKDGGVREKEVSGGFGVGGGVEVGGGSWVAGLVGGRKRK
Sbjct: 1  REREREETKLPHSPTGGDLGEAKDGGVREKEVSGGFGVGGGVEVGGGSWVAGLVGGRKRK 60

Query: 61 TKVE 65
          TKVE
Sbjct: 61 TKVE 64

The following BLAST results are available for this feature:

BLAST of CsaV3_2G016600 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8651913.1	2.7e-25	100.00	hypothetical protein Csa_023621, partial [Cucumis sativus]	[more]

BLAST of CsaV3_2G016600 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_2G016600 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_2G016600 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..64

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_2G016600.1	CsaV3_2G016600.1	mRNA