CsaV3_2G016320 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_2G016320
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionVQ domain-containing protein
Locationchr2: 13523623 .. 13524603 (+)
RNA-Seq ExpressionCsaV3_2G016320
SyntenyCsaV3_2G016320
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
TTATGATTATACAAATTATATTATCTAAATTTTTTACTAATCATATATATATTTCTACACGCGTGAATTAGTAGTTAGAGTTAAGCCGTCAGTAGTAGTCGTCAGGCAGACGCAACAATCTAATAAGTTTAAGAAATAATTAAGGATGCATTGTTGACATTTGGTCAAACTCCTTCCTCTTTCTCATCATTCATCAATCTACGTAAGCACGTGCGATGCATTGTGTAATGCCCAGTCAAAGTCATAATCGTCCACTACTTACACCTCACCGCCGACTGCTATTTTTTCTACTAAACTGACACCCAAACGAACCTTCTTTTTTCTTCTTCTTCTACTCTCTCTCTCTCTCTATATATATATATAGATATATAAATACAAAAACATACCCACTTCTCAAATTTAAAAACAAAACAAAGAAAAGAAAACTAAATCGTCTGATCAGGTTTTTGTTTTCCCAAAATGGAACCTCACTCTTTTTCCTTTTACTACATGGATCAGGGGGCGCCAGTTCAGAAGACGGGGAAGAAGCCTGTGGCGCCTCCCCGCCCATCCCCACCGCAGGTTTATAAGGTGGATCCTATCAACTTCCGGGATGTTGTTCAGAAGCTAACTGCAGCTCCTCAGTTTCAGGATCGTCGTCTTCAAGCCATGCCGCCTCCACGGCCTGATCTCGCCGATCAGTCCTCACGACCTCGGGATTTGTCCGGGGAGGGAGAGGGTGGCTTTTTCTTGGGACAGTCCTCTCACAGATATTAATTATCTAAATTCTTGGAGTTTTCATGTCATTTTTATCTCTTCTTTCTTTCTTTCTTAATACTTTAATTTGGTTGAATTCTAATTTTTATACTCTCAATAAATTTTCAATTTGTATTTTTGTAGTTCATTTACATGTAACTATGGAAATAATACAGATATGGGAATGAAATTTGTAGTAAAAATACTATTTAATAACATTTTAAAAAATAATAAACTTAATTTGGC

mRNA sequence

ATGGAACCTCACTCTTTTTCCTTTTACTACATGGATCAGGGGGCGCCAGTTCAGAAGACGGGGAAGAAGCCTGTGGCGCCTCCCCGCCCATCCCCACCGCAGGTTTATAAGGTGGATCCTATCAACTTCCGGGATGTTGTTCAGAAGCTAACTGCAGCTCCTCAGTTTCAGGATCGTCGTCTTCAAGCCATGCCGCCTCCACGGCCTGATCTCGCCGATCAGTCCTCACGACCTCGGGATTTGTCCGGGGAGGGAGAGGGTGGCTTTTTCTTGGGACAGTCCTCTCACAGATATTAA

Coding sequence (CDS)

ATGGAACCTCACTCTTTTTCCTTTTACTACATGGATCAGGGGGCGCCAGTTCAGAAGACGGGGAAGAAGCCTGTGGCGCCTCCCCGCCCATCCCCACCGCAGGTTTATAAGGTGGATCCTATCAACTTCCGGGATGTTGTTCAGAAGCTAACTGCAGCTCCTCAGTTTCAGGATCGTCGTCTTCAAGCCATGCCGCCTCCACGGCCTGATCTCGCCGATCAGTCCTCACGACCTCGGGATTTGTCCGGGGAGGGAGAGGGTGGCTTTTTCTTGGGACAGTCCTCTCACAGATATTAA

Protein sequence

MEPHSFSFYYMDQGAPVQKTGKKPVAPPRPSPPQVYKVDPINFRDVVQKLTAAPQFQDRRLQAMPPPRPDLADQSSRPRDLSGEGEGGFFLGQSSHRY*
Homology
BLAST of CsaV3_2G016320 vs. NCBI nr
Match: KAE8651906.1 (hypothetical protein Csa_006780 [Cucumis sativus])

HSP 1 Score: 204.1 bits (518), Expect = 5.4e-49
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 0

Query: 1  MEPHSFSFYYMDQGAPVQKTGKKPVAPPRPSPPQVYKVDPINFRDVVQKLTAAPQFQDRR 60
          MEPHSFSFYYMDQGAPVQKTGKKPVAPPRPSPPQVYKVDPINFRDVVQKLTAAPQFQDRR
Sbjct: 1  MEPHSFSFYYMDQGAPVQKTGKKPVAPPRPSPPQVYKVDPINFRDVVQKLTAAPQFQDRR 60

Query: 61 LQAMPPPRPDLADQSSRPRDLSGEGEGGFFLGQSSHRY 99
          LQAMPPPRPDLADQSSRPRDLSGEGEGGFFLGQSSHRY
Sbjct: 61 LQAMPPPRPDLADQSSRPRDLSGEGEGGFFLGQSSHRY 98

BLAST of CsaV3_2G016320 vs. NCBI nr
Match: KAA0045761.1 (VQ motif-containing protein 29 [Cucumis melo var. makuwa] >TYJ99521.1 VQ motif-containing protein 29 [Cucumis melo var. makuwa])

HSP 1 Score: 176.4 bits (446), Expect = 1.2e-40
Identity = 88/104 (84.62%), Postives = 92/104 (88.46%), Query Frame = 0

Query: 1   MEPHSFSFYYMDQGAPVQKTGKKPVAPPRPSPPQVYKVDPINFRDVVQKLTAAPQFQDRR 60
           MEPHSFSFYY DQGA VQKTGKK VAPPRP+PPQVYKVDPINFRDVVQKLTAAP+FQDRR
Sbjct: 1   MEPHSFSFYYTDQGASVQKTGKKAVAPPRPTPPQVYKVDPINFRDVVQKLTAAPEFQDRR 60

Query: 61  LQAMPPPRPDLADQSSRPRDLSGEGEG------GFFLGQSSHRY 99
           LQAMPPPRP++ADQS RPRD SGEGEG      GFFLGQSS RY
Sbjct: 61  LQAMPPPRPNVADQSRRPRDSSGEGEGGVVSYHGFFLGQSSERY 104

BLAST of CsaV3_2G016320 vs. NCBI nr
Match: XP_022149539.1 (VQ motif-containing protein 29 [Momordica charantia])

HSP 1 Score: 93.6 bits (231), Expect = 1.0e-15
Identity = 50/85 (58.82%), Postives = 59/85 (69.41%), Query Frame = 0

Query: 1  MEPHSFSFYYMDQGAPVQKTGKKPVAPPRPSPPQVYKVDPINFRDVVQKLTAAPQFQDRR 60
          MEPHS S       +P  K   + VAP  P+PPQ+YKV+P++FRDVVQKLTAAP+FQDRR
Sbjct: 1  MEPHSSS------SSPAVKPWNRAVAPLPPTPPQIYKVNPVDFRDVVQKLTAAPEFQDRR 60

Query: 61 LQAMPPPRPDLADQSSRPRDLSGEG 86
          LQAMP PRP     S+   D SGEG
Sbjct: 61 LQAMPAPRPSPPPGSAACTDFSGEG 79

BLAST of CsaV3_2G016320 vs. NCBI nr
Match: KAG6605217.1 (hypothetical protein SDJN03_02534, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 85.9 bits (211), Expect = 2.2e-13
Identity = 46/83 (55.42%), Postives = 57/83 (68.67%), Query Frame = 0

Query: 1  MEPH-------SFSFYYMDQGA---PVQKTGKKPVAPPRPSPPQVYKVDPINFRDVVQKL 60
          MEPH       SFSFYY D         ++ KK VAPP P PP+VYKV+PI FRDVVQKL
Sbjct: 1  MEPHSYSSSSSSFSFYYSDPDGVHKASSRSPKKAVAPPPPMPPRVYKVEPIEFRDVVQKL 60

Query: 61 TAAPQFQDRRLQAMPPPRPDLAD 74
          T+ P++ D RL+AMP PRP+L++
Sbjct: 61 TSPPEYLDPRLKAMPAPRPNLSN 83

BLAST of CsaV3_2G016320 vs. NCBI nr
Match: XP_038692672.1 (uncharacterized protein LOC119990686 [Tripterygium wilfordii] >KAF5749681.1 hypothetical protein HS088_TW03G00006 [Tripterygium wilfordii])

HSP 1 Score: 75.1 bits (183), Expect = 3.8e-10
Identity = 40/67 (59.70%), Postives = 48/67 (71.64%), Query Frame = 0

Query: 16 PVQKTGKKPVAPPRPSPPQVYKVDPINFRDVVQKLTAAPQFQDRRLQAMPPPRPD---LA 75
          P  K  KKP+AP  P+PP++YKVDPINFRD+VQKLT+AP+FQ  RL+ M PP  D   LA
Sbjct: 32 PQSKPWKKPIAPLPPTPPRLYKVDPINFRDLVQKLTSAPEFQTHRLRKMAPPPLDVVVLA 91

Query: 76 DQSSRPR 80
          D   R R
Sbjct: 92 DHHHRHR 98

BLAST of CsaV3_2G016320 vs. ExPASy TrEMBL
Match: A0A0A0LPS3 (VQ domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G271490 PE=4 SV=1)

HSP 1 Score: 181.0 bits (458), Expect = 2.4e-42
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 0

Query: 11 MDQGAPVQKTGKKPVAPPRPSPPQVYKVDPINFRDVVQKLTAAPQFQDRRLQAMPPPRPD 70
          MDQGAPVQKTGKKPVAPPRPSPPQVYKVDPINFRDVVQKLTAAPQFQDRRLQAMPPPRPD
Sbjct: 1  MDQGAPVQKTGKKPVAPPRPSPPQVYKVDPINFRDVVQKLTAAPQFQDRRLQAMPPPRPD 60

Query: 71 LADQSSRPRDLSGEGEGGFFLGQSSHRY 99
          LADQSSRPRDLSGEGEGGFFLGQSSHRY
Sbjct: 61 LADQSSRPRDLSGEGEGGFFLGQSSHRY 88

BLAST of CsaV3_2G016320 vs. ExPASy TrEMBL
Match: A0A5A7TW54 (VQ motif-containing protein 29 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold123G00880 PE=4 SV=1)

HSP 1 Score: 176.4 bits (446), Expect = 5.9e-41
Identity = 88/104 (84.62%), Postives = 92/104 (88.46%), Query Frame = 0

Query: 1   MEPHSFSFYYMDQGAPVQKTGKKPVAPPRPSPPQVYKVDPINFRDVVQKLTAAPQFQDRR 60
           MEPHSFSFYY DQGA VQKTGKK VAPPRP+PPQVYKVDPINFRDVVQKLTAAP+FQDRR
Sbjct: 1   MEPHSFSFYYTDQGASVQKTGKKAVAPPRPTPPQVYKVDPINFRDVVQKLTAAPEFQDRR 60

Query: 61  LQAMPPPRPDLADQSSRPRDLSGEGEG------GFFLGQSSHRY 99
           LQAMPPPRP++ADQS RPRD SGEGEG      GFFLGQSS RY
Sbjct: 61  LQAMPPPRPNVADQSRRPRDSSGEGEGGVVSYHGFFLGQSSERY 104

BLAST of CsaV3_2G016320 vs. ExPASy TrEMBL
Match: A0A6J1D7B4 (VQ motif-containing protein 29 OS=Momordica charantia OX=3673 GN=LOC111017949 PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 5.0e-16
Identity = 50/85 (58.82%), Postives = 59/85 (69.41%), Query Frame = 0

Query: 1  MEPHSFSFYYMDQGAPVQKTGKKPVAPPRPSPPQVYKVDPINFRDVVQKLTAAPQFQDRR 60
          MEPHS S       +P  K   + VAP  P+PPQ+YKV+P++FRDVVQKLTAAP+FQDRR
Sbjct: 1  MEPHSSS------SSPAVKPWNRAVAPLPPTPPQIYKVNPVDFRDVVQKLTAAPEFQDRR 60

Query: 61 LQAMPPPRPDLADQSSRPRDLSGEG 86
          LQAMP PRP     S+   D SGEG
Sbjct: 61 LQAMPAPRPSPPPGSAACTDFSGEG 79

BLAST of CsaV3_2G016320 vs. ExPASy TrEMBL
Match: A0A7J7DTQ3 (VQ domain-containing protein OS=Tripterygium wilfordii OX=458696 GN=HS088_TW03G00006 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 1.8e-10
Identity = 40/67 (59.70%), Postives = 48/67 (71.64%), Query Frame = 0

Query: 16 PVQKTGKKPVAPPRPSPPQVYKVDPINFRDVVQKLTAAPQFQDRRLQAMPPPRPD---LA 75
          P  K  KKP+AP  P+PP++YKVDPINFRD+VQKLT+AP+FQ  RL+ M PP  D   LA
Sbjct: 32 PQSKPWKKPIAPLPPTPPRLYKVDPINFRDLVQKLTSAPEFQTHRLRKMAPPPLDVVVLA 91

Query: 76 DQSSRPR 80
          D   R R
Sbjct: 92 DHHHRHR 98

BLAST of CsaV3_2G016320 vs. ExPASy TrEMBL
Match: A0A5J4ZYQ3 (VQ domain-containing protein OS=Nyssa sinensis OX=561372 GN=F0562_013057 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 4.1e-10
Identity = 35/57 (61.40%), Postives = 46/57 (80.70%), Query Frame = 0

Query: 16  PVQKTGKKPVAPPRPSPPQVYKVDPINFRDVVQKLTAAPQFQDRRLQAMPPPRPDLA 73
           P  K  KKP+AP  P+PP++YKVD +NFR+VVQKLTAAP+FQ RRLQ++ PP  +L+
Sbjct: 46  PGAKPWKKPIAPLPPTPPRIYKVDSVNFREVVQKLTAAPEFQSRRLQSVAPPPLNLS 102

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAE8651906.15.4e-49100.00hypothetical protein Csa_006780 [Cucumis sativus][more]
KAA0045761.11.2e-4084.62VQ motif-containing protein 29 [Cucumis melo var. makuwa] >TYJ99521.1 VQ motif-c... [more]
XP_022149539.11.0e-1558.82VQ motif-containing protein 29 [Momordica charantia][more]
KAG6605217.12.2e-1355.42hypothetical protein SDJN03_02534, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_038692672.13.8e-1059.70uncharacterized protein LOC119990686 [Tripterygium wilfordii] >KAF5749681.1 hypo... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LPS32.4e-42100.00VQ domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G271490 PE=4 SV=... [more]
A0A5A7TW545.9e-4184.62VQ motif-containing protein 29 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s... [more]
A0A6J1D7B45.0e-1658.82VQ motif-containing protein 29 OS=Momordica charantia OX=3673 GN=LOC111017949 PE... [more]
A0A7J7DTQ31.8e-1059.70VQ domain-containing protein OS=Tripterygium wilfordii OX=458696 GN=HS088_TW03G0... [more]
A0A5J4ZYQ34.1e-1061.40VQ domain-containing protein OS=Nyssa sinensis OX=561372 GN=F0562_013057 PE=4 SV... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008889VQPFAMPF05678VQcoord: 30..51
e-value: 2.2E-9
score: 36.6
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 50..98
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..38
NoneNo IPR availablePANTHERPTHR34794:SF1EXPRESSED PROTEINcoord: 18..79
IPR039610VQ motif-containing protein 29PANTHERPTHR34794EXPRESSED PROTEINcoord: 18..79

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_2G016320.1CsaV3_2G016320.1mRNA