CsaV3_2G016320 (gene) Cucumber (Chinese Long) v3
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.TTATGATTATACAAATTATATTATCTAAATTTTTTACTAATCATATATATATTTCTACACGCGTGAATTAGTAGTTAGAGTTAAGCCGTCAGTAGTAGTCGTCAGGCAGACGCAACAATCTAATAAGTTTAAGAAATAATTAAGGATGCATTGTTGACATTTGGTCAAACTCCTTCCTCTTTCTCATCATTCATCAATCTACGTAAGCACGTGCGATGCATTGTGTAATGCCCAGTCAAAGTCATAATCGTCCACTACTTACACCTCACCGCCGACTGCTATTTTTTCTACTAAACTGACACCCAAACGAACCTTCTTTTTTCTTCTTCTTCTACTCTCTCTCTCTCTCTATATATATATATAGATATATAAATACAAAAACATACCCACTTCTCAAATTTAAAAACAAAACAAAGAAAAGAAAACTAAATCGTCTGATCAGGTTTTTGTTTTCCCAAAATGGAACCTCACTCTTTTTCCTTTTACTACATGGATCAGGGGGCGCCAGTTCAGAAGACGGGGAAGAAGCCTGTGGCGCCTCCCCGCCCATCCCCACCGCAGGTTTATAAGGTGGATCCTATCAACTTCCGGGATGTTGTTCAGAAGCTAACTGCAGCTCCTCAGTTTCAGGATCGTCGTCTTCAAGCCATGCCGCCTCCACGGCCTGATCTCGCCGATCAGTCCTCACGACCTCGGGATTTGTCCGGGGAGGGAGAGGGTGGCTTTTTCTTGGGACAGTCCTCTCACAGATATTAATTATCTAAATTCTTGGAGTTTTCATGTCATTTTTATCTCTTCTTTCTTTCTTTCTTAATACTTTAATTTGGTTGAATTCTAATTTTTATACTCTCAATAAATTTTCAATTTGTATTTTTGTAGTTCATTTACATGTAACTATGGAAATAATACAGATATGGGAATGAAATTTGTAGTAAAAATACTATTTAATAACATTTTAAAAAATAATAAACTTAATTTGGC ATGGAACCTCACTCTTTTTCCTTTTACTACATGGATCAGGGGGCGCCAGTTCAGAAGACGGGGAAGAAGCCTGTGGCGCCTCCCCGCCCATCCCCACCGCAGGTTTATAAGGTGGATCCTATCAACTTCCGGGATGTTGTTCAGAAGCTAACTGCAGCTCCTCAGTTTCAGGATCGTCGTCTTCAAGCCATGCCGCCTCCACGGCCTGATCTCGCCGATCAGTCCTCACGACCTCGGGATTTGTCCGGGGAGGGAGAGGGTGGCTTTTTCTTGGGACAGTCCTCTCACAGATATTAA ATGGAACCTCACTCTTTTTCCTTTTACTACATGGATCAGGGGGCGCCAGTTCAGAAGACGGGGAAGAAGCCTGTGGCGCCTCCCCGCCCATCCCCACCGCAGGTTTATAAGGTGGATCCTATCAACTTCCGGGATGTTGTTCAGAAGCTAACTGCAGCTCCTCAGTTTCAGGATCGTCGTCTTCAAGCCATGCCGCCTCCACGGCCTGATCTCGCCGATCAGTCCTCACGACCTCGGGATTTGTCCGGGGAGGGAGAGGGTGGCTTTTTCTTGGGACAGTCCTCTCACAGATATTAA MEPHSFSFYYMDQGAPVQKTGKKPVAPPRPSPPQVYKVDPINFRDVVQKLTAAPQFQDRRLQAMPPPRPDLADQSSRPRDLSGEGEGGFFLGQSSHRY* Homology
BLAST of CsaV3_2G016320 vs. NCBI nr
Match: KAE8651906.1 (hypothetical protein Csa_006780 [Cucumis sativus]) HSP 1 Score: 204.1 bits (518), Expect = 5.4e-49 Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 0
BLAST of CsaV3_2G016320 vs. NCBI nr
Match: KAA0045761.1 (VQ motif-containing protein 29 [Cucumis melo var. makuwa] >TYJ99521.1 VQ motif-containing protein 29 [Cucumis melo var. makuwa]) HSP 1 Score: 176.4 bits (446), Expect = 1.2e-40 Identity = 88/104 (84.62%), Postives = 92/104 (88.46%), Query Frame = 0
BLAST of CsaV3_2G016320 vs. NCBI nr
Match: XP_022149539.1 (VQ motif-containing protein 29 [Momordica charantia]) HSP 1 Score: 93.6 bits (231), Expect = 1.0e-15 Identity = 50/85 (58.82%), Postives = 59/85 (69.41%), Query Frame = 0
BLAST of CsaV3_2G016320 vs. NCBI nr
Match: KAG6605217.1 (hypothetical protein SDJN03_02534, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 85.9 bits (211), Expect = 2.2e-13 Identity = 46/83 (55.42%), Postives = 57/83 (68.67%), Query Frame = 0
BLAST of CsaV3_2G016320 vs. NCBI nr
Match: XP_038692672.1 (uncharacterized protein LOC119990686 [Tripterygium wilfordii] >KAF5749681.1 hypothetical protein HS088_TW03G00006 [Tripterygium wilfordii]) HSP 1 Score: 75.1 bits (183), Expect = 3.8e-10 Identity = 40/67 (59.70%), Postives = 48/67 (71.64%), Query Frame = 0
BLAST of CsaV3_2G016320 vs. ExPASy TrEMBL
Match: A0A0A0LPS3 (VQ domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G271490 PE=4 SV=1) HSP 1 Score: 181.0 bits (458), Expect = 2.4e-42 Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 0
BLAST of CsaV3_2G016320 vs. ExPASy TrEMBL
Match: A0A5A7TW54 (VQ motif-containing protein 29 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold123G00880 PE=4 SV=1) HSP 1 Score: 176.4 bits (446), Expect = 5.9e-41 Identity = 88/104 (84.62%), Postives = 92/104 (88.46%), Query Frame = 0
BLAST of CsaV3_2G016320 vs. ExPASy TrEMBL
Match: A0A6J1D7B4 (VQ motif-containing protein 29 OS=Momordica charantia OX=3673 GN=LOC111017949 PE=4 SV=1) HSP 1 Score: 93.6 bits (231), Expect = 5.0e-16 Identity = 50/85 (58.82%), Postives = 59/85 (69.41%), Query Frame = 0
BLAST of CsaV3_2G016320 vs. ExPASy TrEMBL
Match: A0A7J7DTQ3 (VQ domain-containing protein OS=Tripterygium wilfordii OX=458696 GN=HS088_TW03G00006 PE=4 SV=1) HSP 1 Score: 75.1 bits (183), Expect = 1.8e-10 Identity = 40/67 (59.70%), Postives = 48/67 (71.64%), Query Frame = 0
BLAST of CsaV3_2G016320 vs. ExPASy TrEMBL
Match: A0A5J4ZYQ3 (VQ domain-containing protein OS=Nyssa sinensis OX=561372 GN=F0562_013057 PE=4 SV=1) HSP 1 Score: 73.9 bits (180), Expect = 4.1e-10 Identity = 35/57 (61.40%), Postives = 46/57 (80.70%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
|