CsaV3_2G016180 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_2G016180
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	DUF1279 domain-containing protein
Location	chr2: 13389865 .. 13390302 (+)
RNA-Seq Expression	CsaV3_2G016180
Synteny	CsaV3_2G016180

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTTTCTTCACTGGCGGCGGAAGATTCCGTGAGCTTCTTAAGAAGTACGGAAAAGTCGCAATTGGAGTTCATTTCTCAGTATCGGGGGCTTCGATCACTGGCCTCTATGTTGCCATCAAGAACAATGTCGATGTTGAATCACTACTCGATAAGCTACATATGGATCGATTCTTCTCTAAAGATCAGCCGCAGATAAATCCCTCGGAAGCCACATCGTCCGTAGACGACGGATTTATGAACGAAGAAAGATCCGCTTCGGAAATTCAACCGACAAGGAATCGTACCGCCGAACTTGCAGCGTCGACTGGCGGTGCGTTGGCTTTGGCTGTGCTTTGCAACAAAGCGTTACTGCCTATTCGGATCCCAATAACGATTGCATTAACGCCGCCGATTGCGAGGTTGCTGGCGAGGCGAGGGATTGTGAGAAGTGGTTGA

mRNA sequence

ATGTCTTTCTTCACTGGCGGCGGAAGATTCCGTGAGCTTCTTAAGAAGTACGGAAAAGTCGCAATTGGAGTTCATTTCTCAGTATCGGGGGCTTCGATCACTGGCCTCTATGTTGCCATCAAGAACAATGTCGATGTTGAATCACTACTCGATAAGCTACATATGGATCGATTCTTCTCTAAAGATCAGCCGCAGATAAATCCCTCGGAAGCCACATCGTCCGTAGACGACGGATTTATGAACGAAGAAAGATCCGCTTCGGAAATTCAACCGACAAGGAATCGTACCGCCGAACTTGCAGCGTCGACTGGCGGTGCGTTGGCTTTGGCTGTGCTTTGCAACAAAGCGTTACTGCCTATTCGGATCCCAATAACGATTGCATTAACGCCGCCGATTGCGAGGTTGCTGGCGAGGCGAGGGATTGTGAGAAGTGGTTGA

Coding sequence (CDS)

ATGTCTTTCTTCACTGGCGGCGGAAGATTCCGTGAGCTTCTTAAGAAGTACGGAAAAGTCGCAATTGGAGTTCATTTCTCAGTATCGGGGGCTTCGATCACTGGCCTCTATGTTGCCATCAAGAACAATGTCGATGTTGAATCACTACTCGATAAGCTACATATGGATCGATTCTTCTCTAAAGATCAGCCGCAGATAAATCCCTCGGAAGCCACATCGTCCGTAGACGACGGATTTATGAACGAAGAAAGATCCGCTTCGGAAATTCAACCGACAAGGAATCGTACCGCCGAACTTGCAGCGTCGACTGGCGGTGCGTTGGCTTTGGCTGTGCTTTGCAACAAAGCGTTACTGCCTATTCGGATCCCAATAACGATTGCATTAACGCCGCCGATTGCGAGGTTGCTGGCGAGGCGAGGGATTGTGAGAAGTGGTTGA

Protein sequence

MSFFTGGGRFRELLKKYGKVAIGVHFSVSGASITGLYVAIKNNVDVESLLDKLHMDRFFSKDQPQINPSEATSSVDDGFMNEERSASEIQPTRNRTAELAASTGGALALAVLCNKALLPIRIPITIALTPPIARLLARRGIVRSG*

Homology

[Close]

BLAST of CsaV3_2G016180 vs. NCBI nr
Match: XP_004147050.1 (uncharacterized protein LOC101221163 [Cucumis sativus] >KGN61943.1 hypothetical protein Csa_006287 [Cucumis sativus])

HSP 1 Score: 276.2 bits (705), Expect = 1.7e-70
Identity = 145/145 (100.00%), Postives = 145/145 (100.00%), Query Frame = 0


Query: 1   MSFFTGGGRFRELLKKYGKVAIGVHFSVSGASITGLYVAIKNNVDVESLLDKLHMDRFFS 60
           MSFFTGGGRFRELLKKYGKVAIGVHFSVSGASITGLYVAIKNNVDVESLLDKLHMDRFFS
Sbjct: 1   MSFFTGGGRFRELLKKYGKVAIGVHFSVSGASITGLYVAIKNNVDVESLLDKLHMDRFFS 60

Query: 61  KDQPQINPSEATSSVDDGFMNEERSASEIQPTRNRTAELAASTGGALALAVLCNKALLPI 120
           KDQPQINPSEATSSVDDGFMNEERSASEIQPTRNRTAELAASTGGALALAVLCNKALLPI
Sbjct: 61  KDQPQINPSEATSSVDDGFMNEERSASEIQPTRNRTAELAASTGGALALAVLCNKALLPI 120

Query: 121 RIPITIALTPPIARLLARRGIVRSG 146
           RIPITIALTPPIARLLARRGIVRSG
Sbjct: 121 RIPITIALTPPIARLLARRGIVRSG 145

[Close]

BLAST of CsaV3_2G016180 vs. NCBI nr
Match: XP_008457709.1 (PREDICTED: uncharacterized protein LOC103497342 [Cucumis melo] >KAA0045747.1 uncharacterized protein E6C27_scaffold243G002670 [Cucumis melo var. makuwa] >TYJ99535.1 uncharacterized protein E5676_scaffold123G001030 [Cucumis melo var. makuwa])

HSP 1 Score: 269.6 bits (688), Expect = 1.6e-68
Identity = 141/145 (97.24%), Postives = 143/145 (98.62%), Query Frame = 0


Query: 1   MSFFTGGGRFRELLKKYGKVAIGVHFSVSGASITGLYVAIKNNVDVESLLDKLHMDRFFS 60
           MSFFTGGGRFRELLKKYGKVAIGVHFSVSGASITGLYVAIKNNVDVESLLDKLHMDRFFS
Sbjct: 1   MSFFTGGGRFRELLKKYGKVAIGVHFSVSGASITGLYVAIKNNVDVESLLDKLHMDRFFS 60

Query: 61  KDQPQINPSEATSSVDDGFMNEERSASEIQPTRNRTAELAASTGGALALAVLCNKALLPI 120
           KDQPQ NPSE +SSVDDGF+NEERSASEIQPTRNRTAELAASTGGALALAVLCNKALLPI
Sbjct: 61  KDQPQTNPSEVSSSVDDGFINEERSASEIQPTRNRTAELAASTGGALALAVLCNKALLPI 120

Query: 121 RIPITIALTPPIARLLARRGIVRSG 146
           RIPITIALTPPIARLLARRGIVRSG
Sbjct: 121 RIPITIALTPPIARLLARRGIVRSG 145

[Close]

BLAST of CsaV3_2G016180 vs. NCBI nr
Match: XP_038902628.1 (uncharacterized protein LOC120089278 [Benincasa hispida])

HSP 1 Score: 256.5 bits (654), Expect = 1.4e-64
Identity = 135/145 (93.10%), Postives = 138/145 (95.17%), Query Frame = 0


Query: 1   MSFFTGGGRFRELLKKYGKVAIGVHFSVSGASITGLYVAIKNNVDVESLLDKLHMDRFFS 60
           M+FFTGGGRFRELL+KYGKVAIGVHFSVS ASITGLYVAIKNNVDVESLLDKLHMD FFS
Sbjct: 1   MAFFTGGGRFRELLRKYGKVAIGVHFSVSAASITGLYVAIKNNVDVESLLDKLHMDGFFS 60

Query: 61  KDQPQINPSEATSSVDDGFMNEERSASEIQPTRNRTAELAASTGGALALAVLCNKALLPI 120
           KDQPQ  PSE TSSVDDGFMNEER ASEIQ TRNRTAELAASTGGALALAVLCNKALLPI
Sbjct: 61  KDQPQTTPSEITSSVDDGFMNEERPASEIQSTRNRTAELAASTGGALALAVLCNKALLPI 120

Query: 121 RIPITIALTPPIARLLARRGIVRSG 146
           RIPITIALTPPIARLLARRGI+RSG
Sbjct: 121 RIPITIALTPPIARLLARRGIMRSG 145

[Close]

BLAST of CsaV3_2G016180 vs. NCBI nr
Match: XP_023533856.1 (uncharacterized protein LOC111795580 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 237.7 bits (605), Expect = 6.5e-59
Identity = 129/152 (84.87%), Postives = 135/152 (88.82%), Query Frame = 0


Query: 1   MSFFTGGGRFRELLKKYGKVAIGVHFSVSGASITGLYVAIKNNVDVESLLDKLHMDRFFS 60
           M+FFTGGGRFRELL+KYGKVAIGVHFSVS ASITGLYVAIKNNVDVESLLDKLHMD F S
Sbjct: 1   MAFFTGGGRFRELLRKYGKVAIGVHFSVSSASITGLYVAIKNNVDVESLLDKLHMDGFSS 60

Query: 61  KDQPQINPSEATSSVDDGFMNEERSASEIQPT-------RNRTAELAASTGGALALAVLC 120
           KD PQ +PSE TSSVDDGF+ EER  SEIQ T       RNRTAELAASTGGALALAVLC
Sbjct: 61  KDTPQTSPSEITSSVDDGFVIEERPTSEIQSTVMEEPRKRNRTAELAASTGGALALAVLC 120

Query: 121 NKALLPIRIPITIALTPPIARLLARRGIVRSG 146
           NKALLPIR+PITIALTPPIARLLARRGI+RSG
Sbjct: 121 NKALLPIRVPITIALTPPIARLLARRGIMRSG 152

[Close]

BLAST of CsaV3_2G016180 vs. NCBI nr
Match: XP_022947464.1 (uncharacterized protein LOC111451320 [Cucurbita moschata] >KAG7027024.1 hypothetical protein SDJN02_11032, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 235.0 bits (598), Expect = 4.2e-58
Identity = 128/152 (84.21%), Postives = 134/152 (88.16%), Query Frame = 0


Query: 1   MSFFTGGGRFRELLKKYGKVAIGVHFSVSGASITGLYVAIKNNVDVESLLDKLHMDRFFS 60
           M+FFTGGGRFRELL+KYGKVAIGVHFSVS ASITGLYVAIKNNVDVESLLDKLHMD F S
Sbjct: 1   MAFFTGGGRFRELLRKYGKVAIGVHFSVSAASITGLYVAIKNNVDVESLLDKLHMDGFSS 60

Query: 61  KDQPQINPSEATSSVDDGFMNEERSASEIQPT-------RNRTAELAASTGGALALAVLC 120
           KD PQ +PSE TSSVDDGF+ EER  S IQ T       RNRTAELAASTGGALALAVLC
Sbjct: 61  KDTPQTSPSEITSSVDDGFVIEERPTSGIQSTVMEEPRKRNRTAELAASTGGALALAVLC 120

Query: 121 NKALLPIRIPITIALTPPIARLLARRGIVRSG 146
           NKALLPIR+PITIALTPPIARLLARRGI+RSG
Sbjct: 121 NKALLPIRVPITIALTPPIARLLARRGIMRSG 152

[Close]

BLAST of CsaV3_2G016180 vs. ExPASy TrEMBL
Match: A0A0A0LJH5 (DUF1279 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G270860 PE=4 SV=1)

HSP 1 Score: 276.2 bits (705), Expect = 8.0e-71
Identity = 145/145 (100.00%), Postives = 145/145 (100.00%), Query Frame = 0


Query: 1   MSFFTGGGRFRELLKKYGKVAIGVHFSVSGASITGLYVAIKNNVDVESLLDKLHMDRFFS 60
           MSFFTGGGRFRELLKKYGKVAIGVHFSVSGASITGLYVAIKNNVDVESLLDKLHMDRFFS
Sbjct: 1   MSFFTGGGRFRELLKKYGKVAIGVHFSVSGASITGLYVAIKNNVDVESLLDKLHMDRFFS 60

Query: 61  KDQPQINPSEATSSVDDGFMNEERSASEIQPTRNRTAELAASTGGALALAVLCNKALLPI 120
           KDQPQINPSEATSSVDDGFMNEERSASEIQPTRNRTAELAASTGGALALAVLCNKALLPI
Sbjct: 61  KDQPQINPSEATSSVDDGFMNEERSASEIQPTRNRTAELAASTGGALALAVLCNKALLPI 120

Query: 121 RIPITIALTPPIARLLARRGIVRSG 146
           RIPITIALTPPIARLLARRGIVRSG
Sbjct: 121 RIPITIALTPPIARLLARRGIVRSG 145

[Close]

BLAST of CsaV3_2G016180 vs. ExPASy TrEMBL
Match: A0A5A7TV59 (DUF1279 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold123G001030 PE=4 SV=1)

HSP 1 Score: 269.6 bits (688), Expect = 7.5e-69
Identity = 141/145 (97.24%), Postives = 143/145 (98.62%), Query Frame = 0


Query: 1   MSFFTGGGRFRELLKKYGKVAIGVHFSVSGASITGLYVAIKNNVDVESLLDKLHMDRFFS 60
           MSFFTGGGRFRELLKKYGKVAIGVHFSVSGASITGLYVAIKNNVDVESLLDKLHMDRFFS
Sbjct: 1   MSFFTGGGRFRELLKKYGKVAIGVHFSVSGASITGLYVAIKNNVDVESLLDKLHMDRFFS 60

Query: 61  KDQPQINPSEATSSVDDGFMNEERSASEIQPTRNRTAELAASTGGALALAVLCNKALLPI 120
           KDQPQ NPSE +SSVDDGF+NEERSASEIQPTRNRTAELAASTGGALALAVLCNKALLPI
Sbjct: 61  KDQPQTNPSEVSSSVDDGFINEERSASEIQPTRNRTAELAASTGGALALAVLCNKALLPI 120

Query: 121 RIPITIALTPPIARLLARRGIVRSG 146
           RIPITIALTPPIARLLARRGIVRSG
Sbjct: 121 RIPITIALTPPIARLLARRGIVRSG 145

[Close]

BLAST of CsaV3_2G016180 vs. ExPASy TrEMBL
Match: A0A1S3C646 (uncharacterized protein LOC103497342 OS=Cucumis melo OX=3656 GN=LOC103497342 PE=4 SV=1)

HSP 1 Score: 269.6 bits (688), Expect = 7.5e-69
Identity = 141/145 (97.24%), Postives = 143/145 (98.62%), Query Frame = 0


Query: 1   MSFFTGGGRFRELLKKYGKVAIGVHFSVSGASITGLYVAIKNNVDVESLLDKLHMDRFFS 60
           MSFFTGGGRFRELLKKYGKVAIGVHFSVSGASITGLYVAIKNNVDVESLLDKLHMDRFFS
Sbjct: 1   MSFFTGGGRFRELLKKYGKVAIGVHFSVSGASITGLYVAIKNNVDVESLLDKLHMDRFFS 60

Query: 61  KDQPQINPSEATSSVDDGFMNEERSASEIQPTRNRTAELAASTGGALALAVLCNKALLPI 120
           KDQPQ NPSE +SSVDDGF+NEERSASEIQPTRNRTAELAASTGGALALAVLCNKALLPI
Sbjct: 61  KDQPQTNPSEVSSSVDDGFINEERSASEIQPTRNRTAELAASTGGALALAVLCNKALLPI 120

Query: 121 RIPITIALTPPIARLLARRGIVRSG 146
           RIPITIALTPPIARLLARRGIVRSG
Sbjct: 121 RIPITIALTPPIARLLARRGIVRSG 145

[Close]

BLAST of CsaV3_2G016180 vs. ExPASy TrEMBL
Match: A0A6J1G6W3 (uncharacterized protein LOC111451320 OS=Cucurbita moschata OX=3662 GN=LOC111451320 PE=4 SV=1)

HSP 1 Score: 235.0 bits (598), Expect = 2.0e-58
Identity = 128/152 (84.21%), Postives = 134/152 (88.16%), Query Frame = 0


Query: 1   MSFFTGGGRFRELLKKYGKVAIGVHFSVSGASITGLYVAIKNNVDVESLLDKLHMDRFFS 60
           M+FFTGGGRFRELL+KYGKVAIGVHFSVS ASITGLYVAIKNNVDVESLLDKLHMD F S
Sbjct: 1   MAFFTGGGRFRELLRKYGKVAIGVHFSVSAASITGLYVAIKNNVDVESLLDKLHMDGFSS 60

Query: 61  KDQPQINPSEATSSVDDGFMNEERSASEIQPT-------RNRTAELAASTGGALALAVLC 120
           KD PQ +PSE TSSVDDGF+ EER  S IQ T       RNRTAELAASTGGALALAVLC
Sbjct: 61  KDTPQTSPSEITSSVDDGFVIEERPTSGIQSTVMEEPRKRNRTAELAASTGGALALAVLC 120

Query: 121 NKALLPIRIPITIALTPPIARLLARRGIVRSG 146
           NKALLPIR+PITIALTPPIARLLARRGI+RSG
Sbjct: 121 NKALLPIRVPITIALTPPIARLLARRGIMRSG 152

[Close]

BLAST of CsaV3_2G016180 vs. ExPASy TrEMBL
Match: A0A6J1CXM4 (uncharacterized protein LOC111015379 OS=Momordica charantia OX=3673 GN=LOC111015379 PE=4 SV=1)

HSP 1 Score: 234.2 bits (596), Expect = 3.5e-58
Identity = 128/152 (84.21%), Postives = 134/152 (88.16%), Query Frame = 0


Query: 1   MSFFTGGGRFRELLKKYGKVAIGVHFSVSGASITGLYVAIKNNVDVESLLDKLHMDRFFS 60
           M+FFTGGGRFRELL+KYGKVAIGVHFSVS ASITGLYVAIKNNVDVESLLDKLHMD F S
Sbjct: 1   MAFFTGGGRFRELLRKYGKVAIGVHFSVSAASITGLYVAIKNNVDVESLLDKLHMDGFSS 60

Query: 61  KDQPQINPSEATSSVDDGFMNEERSASEIQPT-------RNRTAELAASTGGALALAVLC 120
           KDQPQ  PSE+TSS DDGF+ EER  SE Q T       RNRTAELAASTGGALALAVLC
Sbjct: 61  KDQPQTIPSESTSSADDGFVIEERPVSENQSTAVQEPRRRNRTAELAASTGGALALAVLC 120

Query: 121 NKALLPIRIPITIALTPPIARLLARRGIVRSG 146
           NKALLPIRIPITIALTPPI+RLLARRGI+RSG
Sbjct: 121 NKALLPIRIPITIALTPPISRLLARRGIMRSG 152

[Close]

BLAST of CsaV3_2G016180 vs. TAIR 10
Match: AT2G20940.1 (Protein of unknown function (DUF1279) )

HSP 1 Score: 142.9 bits (359), Expect = 2.0e-34
Identity = 79/137 (57.66%), Postives = 99/137 (72.26%), Query Frame = 0


Query: 9   RFRELLKKYGKVAIGVHFSVSGASITGLYVAIKNNVDVESLLDKLHMDRFFSKDQPQINP 68
           R +E++KKYGKVA+GVHFSVSG SI+G Y+AIKNNVDVESLL+K  +  F SK+ P  NP
Sbjct: 4   RLKEIVKKYGKVALGVHFSVSGVSISGFYIAIKNNVDVESLLEKYQIPWFSSKENP--NP 63

Query: 69  SEATSSVDDGFMNEERSASEIQPTRNRTAELAASTGGALALAVLCNKALLPIRIPITIAL 128
           S      + G +  +          N+T +LA S GGALALAVLCNKAL PIR+PIT+AL
Sbjct: 64  SLDLKLEEQGSVTSD----------NKTKQLAKSAGGALALAVLCNKALFPIRVPITMAL 123

Query: 129 TPPIARLLARRGIVRSG 146
           TPPIAR L +R I+++G
Sbjct: 124 TPPIARFLRQRKILKTG 128

The following BLAST results are available for this feature:

BLAST of CsaV3_2G016180 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004147050.1	1.7e-70	100.00	uncharacterized protein LOC101221163 [Cucumis sativus] >KGN61943.1 hypothetical ...	[more]
XP_008457709.1	1.6e-68	97.24	PREDICTED: uncharacterized protein LOC103497342 [Cucumis melo] >KAA0045747.1 unc...	[more]
XP_038902628.1	1.4e-64	93.10	uncharacterized protein LOC120089278 [Benincasa hispida]	[more]
XP_023533856.1	6.5e-59	84.87	uncharacterized protein LOC111795580 [Cucurbita pepo subsp. pepo]	[more]
XP_022947464.1	4.2e-58	84.21	uncharacterized protein LOC111451320 [Cucurbita moschata] >KAG7027024.1 hypothet...	[more]

BLAST of CsaV3_2G016180 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_2G016180 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LJH5	8.0e-71	100.00	DUF1279 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G270860 PE=...	[more]
A0A5A7TV59	7.5e-69	97.24	DUF1279 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A1S3C646	7.5e-69	97.24	uncharacterized protein LOC103497342 OS=Cucumis melo OX=3656 GN=LOC103497342 PE=...	[more]
A0A6J1G6W3	2.0e-58	84.21	uncharacterized protein LOC111451320 OS=Cucurbita moschata OX=3662 GN=LOC1114513...	[more]
A0A6J1CXM4	3.5e-58	84.21	uncharacterized protein LOC111015379 OS=Momordica charantia OX=3673 GN=LOC111015...	[more]

BLAST of CsaV3_2G016180 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G20940.1	2.0e-34	57.66	Protein of unknown function (DUF1279)	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009688	Protein FAM210A/B-like domain	PFAM	PF06916	DUF1279	coord: 9..130 e-value: 2.6E-26 score: 92.0
None	No IPR available	PANTHER	PTHR21377:SF0	PROTEIN FAM210B, MITOCHONDRIAL	coord: 8..141
None	No IPR available	PANTHER	PTHR21377	UNCHARACTERIZED	coord: 8..141

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_2G016180.1	CsaV3_2G016180.1	mRNA