CsaV3_2G015360 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_2G015360
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	ribosome-binding factor A family protein
Location	chr2: 12835919 .. 12838502 (-)
RNA-Seq Expression	CsaV3_2G015360
Synteny	CsaV3_2G015360

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACGCATCTTCTTCTGCAGCAAATTCATCCCCAATTCTACTTTTCGCCATTGAAATTCTTACAATCTTCACCATTTCCCTCTCAATTTCAAGCTTCCCGCCCATGCGTTTACTCCCCAACTTCTGTCACCCTTCTTCCTCCACCTCCGGTGATGAGAGGCGCAACCATACGGTGTATGGCCAATTCACGTAGGATTAAAATGGTGGCTAAGCAGATTCAAAGGGAGCTTTCCGATATGCTTCTTACTGATAAGGTGTTGCAGTTCGCCATTCTTCCTGAGGCCTCTTTGGGAGCTGATAAGTATCTCTCGTCTCTCACTACCATTACTGATGTTGAAGTCTCTGCCGACTTGCAGGTATTGAGAGATTGCTTAAATTGAAGAGCTGGGTTTTATTTACTTTTTGCTGTTCTTGCAGAATTAGGTTTTATTTTTTCTTTTGTGCTCTGTTGTCGTGAAATTGGAATTGAAGCTAAGGGATAGTAAATATTTGCATTTGTACAAGAGAAGATATTCTATCAAGTTTTGACTTTTTAAATTGGTATACTACTCAATTACTGTCTTGGATTGTGTGTATAGTGTAGTTTAGCCACTTGGAAATAATTAGGAGGCTTCAGAAGCTCATTTTCAAATGTTTGGTTGAAGACATTTTTGATATTATTATCTTTGAAGCATAAATGAAGTTATAAAAAAATTAACTTAAAGATTTAACTTATTGAGGTACATATTGAAATTGAAGAGAACCCACCTTGAGTAATGCTTGAAAGTTACTTTAGCCTGGATAAATATTTCGGAACAACGATGCTCTTCGAAGTATTCCTGGGAAGTTATGCTGACATCAACCGCTGCTAAACCATTGCTTCTCAAGCCAGAACTGATTCTACTATAGAGACCAATGAAAGAAGTTCATTGATATCTTTTTTTTTTGTCATAAGGCAACTGATCCGGATTGCATCTGCATTTGAACTTGCAGTGCAGTTGTGTAAGTTGTGGCCATTTCTTTTTATTGATGTTTGAACAAATTTAACATTGAGTGAGCTCCCTACAATATAGGATTTTCCTTTTTTGTCTTATTTTAATCAAAATATTTCTTAAACTGAGGTTCAAATATTAATATGTTACACCTTTGACCGTTGGAATAAGATATGTTAAAGGGATAAAAGCCATGGCAGTGCAATAAAAACCCTTTGCTCTTGATTGAGCTGTTTTGGTGTGCTCTTTTTAGACTGTAGTAAGTCTCTTGACTTTCAATCTTGCTATAAATGCGTTTGTATGCTCCTCGTTACTTGATTGATTTGATGTCAAATGCAACATAGAGATTTTTTCATAAAATAGTGAACATGTACCTTTTTATTGTTGTGAAAATTTGAGTACTATGAAGGTCAGACATTATGTTTGCCATTTAACTCTTCACCTTCCATGAGTTATCAGTTTTTTTTTTTTTTTTTTTTGTTATTTACAATTTAGGTATCATGTGCATGTGATGTGAATATGCTAATCTCAACTTACACTCAGATGGAACAATAAATACCTTTTCATATTCATTTTGGTGTATATGTTGGCTGCTTTGCCCCATGCTTGAGCTGATAAGTAATGGTTTTGCTCTATTATATGAATACAAACAAGCAGGTGGTTAAAGTATACGTATCAGTCTTTGGTGATGAAAGAGGAAAGGATGTTGCTATCGCTGGGTTGAAGTCTAAAGCAAAGTATGTTCGAAGTGTATTGGGAAAACGCATGAAGCTTCGACTAACTCCTGAGATTCGCTTTATAGAAGATGAATCTTTTGAGAGAGGAAGCAGGGTAAGTAACAAACTAACATTTTATGTTCTTGCTTCTTAATTCTTATATAAATTTTCTTGCCGTGGCCAGGACCAGTTTCAATTATTCTTAAGAATTCCTTCCACAAGATGTTTTCATCTCATATTCTTCATGGTTTTCCAATGCATGTGTTCGTCTTACAAACTTCATGTTTATCTCCTATTTCCTGTTGAAATATTCCTGGGAAGCTCTAGAAATAATCATATTTTTGGCTGCTATTTCCTACAACAAATGCTTTGAAATGACAAATTTACCAGTTAGAAAAAGAGAGATGGTCTTATCATTTGTGAGAGCAATGGGTCATCTTCTTAGTAAGGGCTCAAACGGTCATGGTCATATGAAAACTAGTAATTGTAGATTAGATTGACTTTTAAAAAGTACAACGCAATTAGCCAGGGTCATATGCATGGTTAGGTAGGTTCCTCTTGGGTTTTTCAAGTTTCCAGTGTGTATTTTGTCTCATTATAATTCGAGCATTAGTCTCTTTTCTTTCATCAATGAAAAGTCCCGTTTCCTTGCCTGTGCGAATTTTCAAGTTTTTGCATCCCTATAATTTAACAACTGGAAGATTACTTCAAGATTCTTTTCTGTACTGATTTGGTTTGAACTTTCCCAGGTAATTGCCATATTGGATCGAATCAAGGACAAAAAGAAGGATACCGTTGATGAAGACTTCGACCAACCTGAACTATCTGATGCTCTTGATGACGACAGGGATTGGAAAGGTGACGATGCTGATGAAGACATAATATATGTACAATAG

mRNA sequence

ATGACGCATCTTCTTCTGCAGCAAATTCATCCCCAATTCTACTTTTCGCCATTGAAATTCTTACAATCTTCACCATTTCCCTCTCAATTTCAAGCTTCCCGCCCATGCGTTTACTCCCCAACTTCTGTCACCCTTCTTCCTCCACCTCCGGTGATGAGAGGCGCAACCATACGGTGTATGGCCAATTCACGTAGGATTAAAATGGTGGCTAAGCAGATTCAAAGGGAGCTTTCCGATATGCTTCTTACTGATAAGGTGTTGCAGTTCGCCATTCTTCCTGAGGCCTCTTTGGGAGCTGATAAGTATCTCTCGTCTCTCACTACCATTACTGATGTTGAAGTCTCTGCCGACTTGCAGGTGGTTAAAGTATACGTATCAGTCTTTGGTGATGAAAGAGGAAAGGATGTTGCTATCGCTGGGTTGAAGTCTAAAGCAAAGTATGTTCGAAGTGTATTGGGAAAACGCATGAAGCTTCGACTAACTCCTGAGATTCGCTTTATAGAAGATGAATCTTTTGAGAGAGGAAGCAGGGTAATTGCCATATTGGATCGAATCAAGGACAAAAAGAAGGATACCGTTGATGAAGACTTCGACCAACCTGAACTATCTGATGCTCTTGATGACGACAGGGATTGGAAAGGTGACGATGCTGATGAAGACATAATATATGTACAATAG

Coding sequence (CDS)

ATGACGCATCTTCTTCTGCAGCAAATTCATCCCCAATTCTACTTTTCGCCATTGAAATTCTTACAATCTTCACCATTTCCCTCTCAATTTCAAGCTTCCCGCCCATGCGTTTACTCCCCAACTTCTGTCACCCTTCTTCCTCCACCTCCGGTGATGAGAGGCGCAACCATACGGTGTATGGCCAATTCACGTAGGATTAAAATGGTGGCTAAGCAGATTCAAAGGGAGCTTTCCGATATGCTTCTTACTGATAAGGTGTTGCAGTTCGCCATTCTTCCTGAGGCCTCTTTGGGAGCTGATAAGTATCTCTCGTCTCTCACTACCATTACTGATGTTGAAGTCTCTGCCGACTTGCAGGTGGTTAAAGTATACGTATCAGTCTTTGGTGATGAAAGAGGAAAGGATGTTGCTATCGCTGGGTTGAAGTCTAAAGCAAAGTATGTTCGAAGTGTATTGGGAAAACGCATGAAGCTTCGACTAACTCCTGAGATTCGCTTTATAGAAGATGAATCTTTTGAGAGAGGAAGCAGGGTAATTGCCATATTGGATCGAATCAAGGACAAAAAGAAGGATACCGTTGATGAAGACTTCGACCAACCTGAACTATCTGATGCTCTTGATGACGACAGGGATTGGAAAGGTGACGATGCTGATGAAGACATAATATATGTACAATAG

Protein sequence

MTHLLLQQIHPQFYFSPLKFLQSSPFPSQFQASRPCVYSPTSVTLLPPPPVMRGATIRCMANSRRIKMVAKQIQRELSDMLLTDKVLQFAILPEASLGADKYLSSLTTITDVEVSADLQVVKVYVSVFGDERGKDVAIAGLKSKAKYVRSVLGKRMKLRLTPEIRFIEDESFERGSRVIAILDRIKDKKKDTVDEDFDQPELSDALDDDRDWKGDDADEDIIYVQ*

Homology

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BLAST of CsaV3_2G015360 vs. NCBI nr
Match: XP_004151338.1 (probable ribosome-binding factor A, chloroplastic [Cucumis sativus] >KGN61860.1 hypothetical protein Csa_006608 [Cucumis sativus])

HSP 1 Score: 427.9 bits (1099), Expect = 5.3e-116
Identity = 225/225 (100.00%), Postives = 225/225 (100.00%), Query Frame = 0


Query: 1   MTHLLLQQIHPQFYFSPLKFLQSSPFPSQFQASRPCVYSPTSVTLLPPPPVMRGATIRCM 60
           MTHLLLQQIHPQFYFSPLKFLQSSPFPSQFQASRPCVYSPTSVTLLPPPPVMRGATIRCM
Sbjct: 1   MTHLLLQQIHPQFYFSPLKFLQSSPFPSQFQASRPCVYSPTSVTLLPPPPVMRGATIRCM 60

Query: 61  ANSRRIKMVAKQIQRELSDMLLTDKVLQFAILPEASLGADKYLSSLTTITDVEVSADLQV 120
           ANSRRIKMVAKQIQRELSDMLLTDKVLQFAILPEASLGADKYLSSLTTITDVEVSADLQV
Sbjct: 61  ANSRRIKMVAKQIQRELSDMLLTDKVLQFAILPEASLGADKYLSSLTTITDVEVSADLQV 120

Query: 121 VKVYVSVFGDERGKDVAIAGLKSKAKYVRSVLGKRMKLRLTPEIRFIEDESFERGSRVIA 180
           VKVYVSVFGDERGKDVAIAGLKSKAKYVRSVLGKRMKLRLTPEIRFIEDESFERGSRVIA
Sbjct: 121 VKVYVSVFGDERGKDVAIAGLKSKAKYVRSVLGKRMKLRLTPEIRFIEDESFERGSRVIA 180

Query: 181 ILDRIKDKKKDTVDEDFDQPELSDALDDDRDWKGDDADEDIIYVQ 226
           ILDRIKDKKKDTVDEDFDQPELSDALDDDRDWKGDDADEDIIYVQ
Sbjct: 181 ILDRIKDKKKDTVDEDFDQPELSDALDDDRDWKGDDADEDIIYVQ 225

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BLAST of CsaV3_2G015360 vs. NCBI nr
Match: XP_008457619.1 (PREDICTED: probable ribosome-binding factor A, chloroplastic [Cucumis melo] >XP_016902146.1 PREDICTED: probable ribosome-binding factor A, chloroplastic [Cucumis melo] >KAA0045661.1 putative ribosome-binding factor A [Cucumis melo var. makuwa] >TYK02601.1 putative ribosome-binding factor A [Cucumis melo var. makuwa])

HSP 1 Score: 407.5 bits (1046), Expect = 7.4e-110
Identity = 215/228 (94.30%), Postives = 221/228 (96.93%), Query Frame = 0


Query: 1   MTHLLLQQIHPQFYFSPLKF---LQSSPFPSQFQASRPCVYSPTSVTLLPPPPVMRGATI 60
           M HLLLQQIHPQFYFSPLKF   LQSSPFPSQFQASRPC YSP+SV LLPPPPVMRGATI
Sbjct: 1   MPHLLLQQIHPQFYFSPLKFSSSLQSSPFPSQFQASRPCFYSPSSVNLLPPPPVMRGATI 60

Query: 61  RCMANSRRIKMVAKQIQRELSDMLLTDKVLQFAILPEASLGADKYLSSLTTITDVEVSAD 120
           RCMANSRR+KMVAKQIQRELSDMLLTDKVLQFAILPEASLGADKYLSSLTTITDVEVSAD
Sbjct: 61  RCMANSRRVKMVAKQIQRELSDMLLTDKVLQFAILPEASLGADKYLSSLTTITDVEVSAD 120

Query: 121 LQVVKVYVSVFGDERGKDVAIAGLKSKAKYVRSVLGKRMKLRLTPEIRFIEDESFERGSR 180
           LQVVKVYVSVFGDE+GKDVA+AGLKSKAKYVRSVLGKRMKLRLTPEI FIEDESFERGSR
Sbjct: 121 LQVVKVYVSVFGDEKGKDVAMAGLKSKAKYVRSVLGKRMKLRLTPEICFIEDESFERGSR 180

Query: 181 VIAILDRIKDKKKDTVDEDFDQPELSDALDDDRDWKGDDADEDIIYVQ 226
           VIAILDRIKDKKKDT+DEDFD+PELSDALDDDRDWKGDDADEDIIYVQ
Sbjct: 181 VIAILDRIKDKKKDTIDEDFDEPELSDALDDDRDWKGDDADEDIIYVQ 228

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BLAST of CsaV3_2G015360 vs. NCBI nr
Match: XP_038900542.1 (probable ribosome-binding factor A, chloroplastic [Benincasa hispida])

HSP 1 Score: 363.2 bits (931), Expect = 1.6e-96
Identity = 200/224 (89.29%), Postives = 207/224 (92.41%), Query Frame = 0


Query: 5   LLQQIHPQFYFSPLKF---LQSSPFPSQFQASRPCVYSPTSVTLLPPPPVMRGATIRCMA 64
           LLQQIHPQ + SPLK    L SSPFPSQFQASRP  YSP+SVTLL PP +M GATIRCMA
Sbjct: 4   LLQQIHPQPHLSPLKLSSSLPSSPFPSQFQASRPWFYSPSSVTLLRPPRMM-GATIRCMA 63

Query: 65  NSRRIKMVAKQIQRELSDMLLTDKVLQFAILPEASLGADKYLSSLTTITDVEVSADLQVV 124
           NSRR+KMVAKQIQRELSDMLLTDKVLQ+AILPEASLGADKYLSSLTTITDVEVSADLQVV
Sbjct: 64  NSRRVKMVAKQIQRELSDMLLTDKVLQYAILPEASLGADKYLSSLTTITDVEVSADLQVV 123

Query: 125 KVYVSVFGDERGKDVAIAGLKSKAKYVRSVLGKRMKLRLTPEIRFIEDESFERGSRVIAI 184
           KVYVSVFGDERGKDVAIAGLKSKAKYVRSVLGKRMKLRLTPEIRFIEDESFERGSRVIAI
Sbjct: 124 KVYVSVFGDERGKDVAIAGLKSKAKYVRSVLGKRMKLRLTPEIRFIEDESFERGSRVIAI 183

Query: 185 LDRIKDKKKDTVDEDFDQPELSDALDDDRDWKGDDADEDIIYVQ 226
           LDRIKDKKKD  DEDF+  ELSD L+DDRDWKGDDADEDIIYVQ
Sbjct: 184 LDRIKDKKKDNDDEDFEPSELSDTLEDDRDWKGDDADEDIIYVQ 226

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BLAST of CsaV3_2G015360 vs. NCBI nr
Match: XP_022948118.1 (probable ribosome-binding factor A, chloroplastic [Cucurbita moschata])

HSP 1 Score: 336.7 bits (862), Expect = 1.6e-88
Identity = 185/224 (82.59%), Postives = 198/224 (88.39%), Query Frame = 0


Query: 5   LLQQIHPQFYFSPLKF---LQSSPFPSQFQASRPCVYSPTSVTLLPPPPVMRGATIRCMA 64
           LLQQIHPQ +  PLK    L SS FPSQF AS PC  SP SV L+   PVMRGATIRCMA
Sbjct: 4   LLQQIHPQSHHFPLKLSSSLASSRFPSQFLASPPCFCSPNSVALVRRRPVMRGATIRCMA 63

Query: 65  NSRRIKMVAKQIQRELSDMLLTDKVLQFAILPEASLGADKYLSSLTTITDVEVSADLQVV 124
           NSRR+KMV+KQIQRELS+MLLTDKVLQFAILPEASLGADKYLSSLTTITDVE+S+DLQVV
Sbjct: 64  NSRRVKMVSKQIQRELSNMLLTDKVLQFAILPEASLGADKYLSSLTTITDVEISSDLQVV 123

Query: 125 KVYVSVFGDERGKDVAIAGLKSKAKYVRSVLGKRMKLRLTPEIRFIEDESFERGSRVIAI 184
           KVYVSVFGDERGKD+A+AGLKSKAKYVRSVLGKRMKLRLTPEIRFIEDESFERGSRVIAI
Sbjct: 124 KVYVSVFGDERGKDIAMAGLKSKAKYVRSVLGKRMKLRLTPEIRFIEDESFERGSRVIAI 183

Query: 185 LDRIKDKKKDTVDEDFDQPELSDALDDDRDWKGDDADEDIIYVQ 226
           LDRIKD+K +  DED +Q ELSDA  DDRDW+ DDADEDIIYVQ
Sbjct: 184 LDRIKDEKNNIDDEDMEQSELSDAPQDDRDWEEDDADEDIIYVQ 227

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BLAST of CsaV3_2G015360 vs. NCBI nr
Match: KAG6605037.1 (putative ribosome-binding factor A, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 332.8 bits (852), Expect = 2.3e-87
Identity = 183/222 (82.43%), Postives = 196/222 (88.29%), Query Frame = 0


Query: 5   LLQQIHPQFYFSPLKF---LQSSPFPSQFQASRPCVYSPTSVTLLPPPPVMRGATIRCMA 64
           LLQQIHPQ +  PLK    L SS FPSQF AS PC  SP SV L+   PVMRGATIRCMA
Sbjct: 4   LLQQIHPQSHHFPLKLSSSLASSRFPSQFLASPPCFCSPNSVALVRRRPVMRGATIRCMA 63

Query: 65  NSRRIKMVAKQIQRELSDMLLTDKVLQFAILPEASLGADKYLSSLTTITDVEVSADLQVV 124
           NSRR+KMV+KQIQRELS+MLLTDKVLQFAILPEASLGADKYLSSLTTITDVE+S+DLQVV
Sbjct: 64  NSRRVKMVSKQIQRELSNMLLTDKVLQFAILPEASLGADKYLSSLTTITDVEISSDLQVV 123

Query: 125 KVYVSVFGDERGKDVAIAGLKSKAKYVRSVLGKRMKLRLTPEIRFIEDESFERGSRVIAI 184
           KVYVSVFGDERGKD+A+AGLKSKAKYVRSVLGKRMKLRLTPEIRFIEDESFERGSRVIAI
Sbjct: 124 KVYVSVFGDERGKDIAMAGLKSKAKYVRSVLGKRMKLRLTPEIRFIEDESFERGSRVIAI 183

Query: 185 LDRIKDKKKDTVDEDFDQPELSDALDDDRDWKGDDADEDIIY 224
           LDRIKD+K +  DED +Q ELSDA  DDRDW+ DDADEDIIY
Sbjct: 184 LDRIKDEKNNIDDEDMEQSELSDAPQDDRDWEEDDADEDIIY 225

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BLAST of CsaV3_2G015360 vs. ExPASy Swiss-Prot
Match: O65693 (Probable ribosome-binding factor A, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At4g34730 PE=2 SV=2)

HSP 1 Score: 240.4 bits (612), Expect = 2.0e-62
Identity = 131/170 (77.06%), Postives = 148/170 (87.06%), Query Frame = 0


Query: 56  TIRCMANSRRIKMVAKQIQRELSDMLLTDKVLQFAILPEASLGADKYLSSLTTITDVEVS 115
           T+RCMAN RR+KMVAKQI RELSDMLLTD VLQ A+LPEA+LGAD+YLSSLTTI+DVEVS
Sbjct: 50  TVRCMANPRRVKMVAKQIMRELSDMLLTDTVLQHAVLPEAALGADRYLSSLTTISDVEVS 109

Query: 116 ADLQVVKVYVSVFGDERGKDVAIAGLKSKAKYVRSVLGKRMKLRLTPEIRFIEDESFERG 175
            DLQVVKVYVSVFGD+RGKDVAIAGLKSKAKYVRS LGKRMKLRLTPE+RFIEDE+ ERG
Sbjct: 110 NDLQVVKVYVSVFGDDRGKDVAIAGLKSKAKYVRSELGKRMKLRLTPEVRFIEDEAMERG 169

Query: 176 SRVIAILDRIKDKKKDTVDEDFDQPELSDALDDDRDWKGDDADEDIIYVQ 226
           SRVIAILD+IK +K         + E SD+ +DD+DW+ DD DEDIIYV+
Sbjct: 170 SRVIAILDKIKAEK----GSGEGKTEPSDSTEDDQDWEVDDPDEDIIYVK 215

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BLAST of CsaV3_2G015360 vs. ExPASy Swiss-Prot
Match: Q8Z0M8 (Ribosome-binding factor A OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576) OX=103690 GN=rbfA PE=3 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 1.0e-21
Identity = 60/150 (40.00%), Postives = 93/150 (62.00%), Query Frame = 0


Query: 60  MANSRRIKMVAKQIQRELSDMLLTDKVLQFAILPEASLGADKYLSSLTTITDVEVSADLQ 119
           MA +RR+  VA+ I+RE+S ML+              +  D+  + + ++TDV+VS DLQ
Sbjct: 1   MATNRRVSRVAELIKREVSQMLIN------------GIKDDRVGTGMVSVTDVDVSGDLQ 60

Query: 120 VVKVYVSVFGDERGKDVAIAGLKSKAKYVRSVLGKRMKLRLTPEIRFIEDESFERGSRVI 179
             K+YVS++G E  K   +AGLKS   +VRS LG R++LR TPE+ FIED S ERG++V+
Sbjct: 61  HAKIYVSIYGTEEAKAETMAGLKSATGFVRSELGARVRLRRTPEVTFIEDRSIERGTKVL 120

Query: 180 AILDRIKDKKKDTVDEDFDQPELSDALDDD 210
            +L+++++ +        D P   D+LD+D
Sbjct: 121 TLLNKLENARSPD-----DIPSADDSLDED 133

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BLAST of CsaV3_2G015360 vs. ExPASy Swiss-Prot
Match: Q3M9Q8 (Ribosome-binding factor A OS=Trichormus variabilis (strain ATCC 29413 / PCC 7937) OX=240292 GN=rbfA PE=3 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 1.0e-21
Identity = 61/150 (40.67%), Postives = 96/150 (64.00%), Query Frame = 0


Query: 60  MANSRRIKMVAKQIQRELSDMLLTDKVLQFAILPEASLGADKYLSSLTTITDVEVSADLQ 119
           MA +RR+  VA+ I+RE+S ML+              +  D+  + + ++TDV+VS DLQ
Sbjct: 1   MATNRRVSRVAELIKREVSQMLIN------------GIKDDRVGTGMVSVTDVDVSGDLQ 60

Query: 120 VVKVYVSVFGDERGKDVAIAGLKSKAKYVRSVLGKRMKLRLTPEIRFIEDESFERGSRVI 179
             K+YVS++G E  K   +AGLKS   +VRS LG R++LR TPE+ FIED S ERG++V+
Sbjct: 61  HAKIYVSIYGTEEAKAETMAGLKSATGFVRSELGARVRLRRTPEVTFIEDRSIERGTKVL 120

Query: 180 AILDRIKDKKKDTVDEDFDQPELSDALDDD 210
            +L+++++ +  ++D   D P   D+LD+D
Sbjct: 121 TLLNKLENAR--SLD---DIPSADDSLDED 133

[Close]

BLAST of CsaV3_2G015360 vs. ExPASy Swiss-Prot
Match: B8HWS1 (Ribosome-binding factor A OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) OX=395961 GN=rbfA PE=3 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 8.7e-21
Identity = 54/137 (39.42%), Postives = 89/137 (64.96%), Query Frame = 0


Query: 60  MANSRRIKMVAKQIQRELSDMLLTDKVLQFAILPEASLGADKYLSSLTTITDVEVSADLQ 119
           MA  RR+  VA+ I+RE+S ML+            + +  D+  S + ++TDV++S DLQ
Sbjct: 1   MATDRRVARVAELIKREISQMLM------------SGIKDDRVGSGMVSVTDVDLSGDLQ 60

Query: 120 VVKVYVSVFGDERGKDVAIAGLKSKAKYVRSVLGKRMKLRLTPEIRFIEDESFERGSRVI 179
             K++VS++G E  +   +AGLK+   YVRS LG R++LR TPE+ F+ED S ERG++V+
Sbjct: 61  HAKIFVSIYGTEAARAETMAGLKAATGYVRSELGHRVRLRRTPEVVFLEDRSLERGTQVL 120

Query: 180 AILDRIKDKKKDTVDED 197
           ++L+R+ ++++   D D
Sbjct: 121 SLLNRLSEERQKNADLD 125

[Close]

BLAST of CsaV3_2G015360 vs. ExPASy Swiss-Prot
Match: Q93LL7 (Ribosome-binding factor A OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) OX=63737 GN=rbfA PE=3 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 1.1e-20
Identity = 59/145 (40.69%), Postives = 88/145 (60.69%), Query Frame = 0


Query: 60  MANSRRIKMVAKQIQRELSDMLLTDKVLQFAILPEASLGADKYLSSLTTITDVEVSADLQ 119
           MA +RR+  VA+ I+RE+S MLL              +  D+  + + ++TDV+VS DLQ
Sbjct: 1   MATNRRVSRVAELIKREVSQMLLN------------GIKDDRVGTGMVSVTDVDVSGDLQ 60

Query: 120 VVKVYVSVFGDERGKDVAIAGLKSKAKYVRSVLGKRMKLRLTPEIRFIEDESFERGSRVI 179
             K+YVS++G +  K   +AGLKS   YVRS LG R++LR TPE+ F+ED S ERG++V+
Sbjct: 61  HAKIYVSIYGTDEAKVETMAGLKSATGYVRSELGARVRLRRTPEVIFLEDRSIERGNKVL 120

Query: 180 AILDRIKDKK--------KDTVDED 197
           A+L ++   +        +D  DED
Sbjct: 121 ALLSQLNHDRPPENLLAVEDNTDED 133

[Close]

BLAST of CsaV3_2G015360 vs. ExPASy TrEMBL
Match: A0A0A0LIX7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G252090 PE=3 SV=1)

HSP 1 Score: 427.9 bits (1099), Expect = 2.6e-116
Identity = 225/225 (100.00%), Postives = 225/225 (100.00%), Query Frame = 0


Query: 1   MTHLLLQQIHPQFYFSPLKFLQSSPFPSQFQASRPCVYSPTSVTLLPPPPVMRGATIRCM 60
           MTHLLLQQIHPQFYFSPLKFLQSSPFPSQFQASRPCVYSPTSVTLLPPPPVMRGATIRCM
Sbjct: 1   MTHLLLQQIHPQFYFSPLKFLQSSPFPSQFQASRPCVYSPTSVTLLPPPPVMRGATIRCM 60

Query: 61  ANSRRIKMVAKQIQRELSDMLLTDKVLQFAILPEASLGADKYLSSLTTITDVEVSADLQV 120
           ANSRRIKMVAKQIQRELSDMLLTDKVLQFAILPEASLGADKYLSSLTTITDVEVSADLQV
Sbjct: 61  ANSRRIKMVAKQIQRELSDMLLTDKVLQFAILPEASLGADKYLSSLTTITDVEVSADLQV 120

Query: 121 VKVYVSVFGDERGKDVAIAGLKSKAKYVRSVLGKRMKLRLTPEIRFIEDESFERGSRVIA 180
           VKVYVSVFGDERGKDVAIAGLKSKAKYVRSVLGKRMKLRLTPEIRFIEDESFERGSRVIA
Sbjct: 121 VKVYVSVFGDERGKDVAIAGLKSKAKYVRSVLGKRMKLRLTPEIRFIEDESFERGSRVIA 180

Query: 181 ILDRIKDKKKDTVDEDFDQPELSDALDDDRDWKGDDADEDIIYVQ 226
           ILDRIKDKKKDTVDEDFDQPELSDALDDDRDWKGDDADEDIIYVQ
Sbjct: 181 ILDRIKDKKKDTVDEDFDQPELSDALDDDRDWKGDDADEDIIYVQ 225

[Close]

BLAST of CsaV3_2G015360 vs. ExPASy TrEMBL
Match: A0A1S4E1P3 (probable ribosome-binding factor A, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103497269 PE=3 SV=1)

HSP 1 Score: 407.5 bits (1046), Expect = 3.6e-110
Identity = 215/228 (94.30%), Postives = 221/228 (96.93%), Query Frame = 0


Query: 1   MTHLLLQQIHPQFYFSPLKF---LQSSPFPSQFQASRPCVYSPTSVTLLPPPPVMRGATI 60
           M HLLLQQIHPQFYFSPLKF   LQSSPFPSQFQASRPC YSP+SV LLPPPPVMRGATI
Sbjct: 1   MPHLLLQQIHPQFYFSPLKFSSSLQSSPFPSQFQASRPCFYSPSSVNLLPPPPVMRGATI 60

Query: 61  RCMANSRRIKMVAKQIQRELSDMLLTDKVLQFAILPEASLGADKYLSSLTTITDVEVSAD 120
           RCMANSRR+KMVAKQIQRELSDMLLTDKVLQFAILPEASLGADKYLSSLTTITDVEVSAD
Sbjct: 61  RCMANSRRVKMVAKQIQRELSDMLLTDKVLQFAILPEASLGADKYLSSLTTITDVEVSAD 120

Query: 121 LQVVKVYVSVFGDERGKDVAIAGLKSKAKYVRSVLGKRMKLRLTPEIRFIEDESFERGSR 180
           LQVVKVYVSVFGDE+GKDVA+AGLKSKAKYVRSVLGKRMKLRLTPEI FIEDESFERGSR
Sbjct: 121 LQVVKVYVSVFGDEKGKDVAMAGLKSKAKYVRSVLGKRMKLRLTPEICFIEDESFERGSR 180

Query: 181 VIAILDRIKDKKKDTVDEDFDQPELSDALDDDRDWKGDDADEDIIYVQ 226
           VIAILDRIKDKKKDT+DEDFD+PELSDALDDDRDWKGDDADEDIIYVQ
Sbjct: 181 VIAILDRIKDKKKDTIDEDFDEPELSDALDDDRDWKGDDADEDIIYVQ 228

[Close]

BLAST of CsaV3_2G015360 vs. ExPASy TrEMBL
Match: A0A5A7TVW4 (Putative ribosome-binding factor A OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold280G00030 PE=3 SV=1)

HSP 1 Score: 407.5 bits (1046), Expect = 3.6e-110
Identity = 215/228 (94.30%), Postives = 221/228 (96.93%), Query Frame = 0


Query: 1   MTHLLLQQIHPQFYFSPLKF---LQSSPFPSQFQASRPCVYSPTSVTLLPPPPVMRGATI 60
           M HLLLQQIHPQFYFSPLKF   LQSSPFPSQFQASRPC YSP+SV LLPPPPVMRGATI
Sbjct: 1   MPHLLLQQIHPQFYFSPLKFSSSLQSSPFPSQFQASRPCFYSPSSVNLLPPPPVMRGATI 60

Query: 61  RCMANSRRIKMVAKQIQRELSDMLLTDKVLQFAILPEASLGADKYLSSLTTITDVEVSAD 120
           RCMANSRR+KMVAKQIQRELSDMLLTDKVLQFAILPEASLGADKYLSSLTTITDVEVSAD
Sbjct: 61  RCMANSRRVKMVAKQIQRELSDMLLTDKVLQFAILPEASLGADKYLSSLTTITDVEVSAD 120

Query: 121 LQVVKVYVSVFGDERGKDVAIAGLKSKAKYVRSVLGKRMKLRLTPEIRFIEDESFERGSR 180
           LQVVKVYVSVFGDE+GKDVA+AGLKSKAKYVRSVLGKRMKLRLTPEI FIEDESFERGSR
Sbjct: 121 LQVVKVYVSVFGDEKGKDVAMAGLKSKAKYVRSVLGKRMKLRLTPEICFIEDESFERGSR 180

Query: 181 VIAILDRIKDKKKDTVDEDFDQPELSDALDDDRDWKGDDADEDIIYVQ 226
           VIAILDRIKDKKKDT+DEDFD+PELSDALDDDRDWKGDDADEDIIYVQ
Sbjct: 181 VIAILDRIKDKKKDTIDEDFDEPELSDALDDDRDWKGDDADEDIIYVQ 228

[Close]

BLAST of CsaV3_2G015360 vs. ExPASy TrEMBL
Match: A0A6J1G8H2 (probable ribosome-binding factor A, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111451795 PE=3 SV=1)

HSP 1 Score: 336.7 bits (862), Expect = 7.7e-89
Identity = 185/224 (82.59%), Postives = 198/224 (88.39%), Query Frame = 0


Query: 5   LLQQIHPQFYFSPLKF---LQSSPFPSQFQASRPCVYSPTSVTLLPPPPVMRGATIRCMA 64
           LLQQIHPQ +  PLK    L SS FPSQF AS PC  SP SV L+   PVMRGATIRCMA
Sbjct: 4   LLQQIHPQSHHFPLKLSSSLASSRFPSQFLASPPCFCSPNSVALVRRRPVMRGATIRCMA 63

Query: 65  NSRRIKMVAKQIQRELSDMLLTDKVLQFAILPEASLGADKYLSSLTTITDVEVSADLQVV 124
           NSRR+KMV+KQIQRELS+MLLTDKVLQFAILPEASLGADKYLSSLTTITDVE+S+DLQVV
Sbjct: 64  NSRRVKMVSKQIQRELSNMLLTDKVLQFAILPEASLGADKYLSSLTTITDVEISSDLQVV 123

Query: 125 KVYVSVFGDERGKDVAIAGLKSKAKYVRSVLGKRMKLRLTPEIRFIEDESFERGSRVIAI 184
           KVYVSVFGDERGKD+A+AGLKSKAKYVRSVLGKRMKLRLTPEIRFIEDESFERGSRVIAI
Sbjct: 124 KVYVSVFGDERGKDIAMAGLKSKAKYVRSVLGKRMKLRLTPEIRFIEDESFERGSRVIAI 183

Query: 185 LDRIKDKKKDTVDEDFDQPELSDALDDDRDWKGDDADEDIIYVQ 226
           LDRIKD+K +  DED +Q ELSDA  DDRDW+ DDADEDIIYVQ
Sbjct: 184 LDRIKDEKNNIDDEDMEQSELSDAPQDDRDWEEDDADEDIIYVQ 227

[Close]

BLAST of CsaV3_2G015360 vs. ExPASy TrEMBL
Match: A0A6J1KXB5 (probable ribosome-binding factor A, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111499618 PE=3 SV=1)

HSP 1 Score: 329.7 bits (844), Expect = 9.5e-87
Identity = 180/224 (80.36%), Postives = 197/224 (87.95%), Query Frame = 0


Query: 5   LLQQIHPQFYFSPLKF---LQSSPFPSQFQASRPCVYSPTSVTLLPPPPVMRGATIRCMA 64
           LLQQIHPQ +  PLK    L SS FPSQF  S PC  SP SV L+   PVMRGATI+CMA
Sbjct: 4   LLQQIHPQPHHFPLKLSSSLASSRFPSQFLTSPPCFCSPNSVALVRQRPVMRGATIQCMA 63

Query: 65  NSRRIKMVAKQIQRELSDMLLTDKVLQFAILPEASLGADKYLSSLTTITDVEVSADLQVV 124
           NSRR+KMV+KQIQRELS+MLLTDKVLQFAILPEASLGADKYLSSLTTITDVE+S+DLQVV
Sbjct: 64  NSRRVKMVSKQIQRELSNMLLTDKVLQFAILPEASLGADKYLSSLTTITDVEISSDLQVV 123

Query: 125 KVYVSVFGDERGKDVAIAGLKSKAKYVRSVLGKRMKLRLTPEIRFIEDESFERGSRVIAI 184
           KVYVSVFGDERGKD+A+AGLKSKAKYVRSVLGKRMKLRLTPEIRFIEDESFERGSRVIAI
Sbjct: 124 KVYVSVFGDERGKDIAMAGLKSKAKYVRSVLGKRMKLRLTPEIRFIEDESFERGSRVIAI 183

Query: 185 LDRIKDKKKDTVDEDFDQPELSDALDDDRDWKGDDADEDIIYVQ 226
           LDRIKD+K +  DED ++ ELSDA  DDRDW+ D+ADEDIIY+Q
Sbjct: 184 LDRIKDEKNNIDDEDMEKSELSDAPQDDRDWEEDEADEDIIYIQ 227

[Close]

BLAST of CsaV3_2G015360 vs. TAIR 10
Match: AT4G34730.1 (ribosome-binding factor A family protein )

HSP 1 Score: 240.4 bits (612), Expect = 1.5e-63
Identity = 131/170 (77.06%), Postives = 148/170 (87.06%), Query Frame = 0


Query: 56  TIRCMANSRRIKMVAKQIQRELSDMLLTDKVLQFAILPEASLGADKYLSSLTTITDVEVS 115
           T+RCMAN RR+KMVAKQI RELSDMLLTD VLQ A+LPEA+LGAD+YLSSLTTI+DVEVS
Sbjct: 50  TVRCMANPRRVKMVAKQIMRELSDMLLTDTVLQHAVLPEAALGADRYLSSLTTISDVEVS 109

Query: 116 ADLQVVKVYVSVFGDERGKDVAIAGLKSKAKYVRSVLGKRMKLRLTPEIRFIEDESFERG 175
            DLQVVKVYVSVFGD+RGKDVAIAGLKSKAKYVRS LGKRMKLRLTPE+RFIEDE+ ERG
Sbjct: 110 NDLQVVKVYVSVFGDDRGKDVAIAGLKSKAKYVRSELGKRMKLRLTPEVRFIEDEAMERG 169

Query: 176 SRVIAILDRIKDKKKDTVDEDFDQPELSDALDDDRDWKGDDADEDIIYVQ 226
           SRVIAILD+IK +K         + E SD+ +DD+DW+ DD DEDIIYV+
Sbjct: 170 SRVIAILDKIKAEK----GSGEGKTEPSDSTEDDQDWEVDDPDEDIIYVK 215

The following BLAST results are available for this feature:

BLAST of CsaV3_2G015360 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004151338.1	5.3e-116	100.00	probable ribosome-binding factor A, chloroplastic [Cucumis sativus] >KGN61860.1 ...	[more]
XP_008457619.1	7.4e-110	94.30	PREDICTED: probable ribosome-binding factor A, chloroplastic [Cucumis melo] >XP_...	[more]
XP_038900542.1	1.6e-96	89.29	probable ribosome-binding factor A, chloroplastic [Benincasa hispida]	[more]
XP_022948118.1	1.6e-88	82.59	probable ribosome-binding factor A, chloroplastic [Cucurbita moschata]	[more]
KAG6605037.1	2.3e-87	82.43	putative ribosome-binding factor A, chloroplastic, partial [Cucurbita argyrosper...	[more]

BLAST of CsaV3_2G015360 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O65693	2.0e-62	77.06	Probable ribosome-binding factor A, chloroplastic OS=Arabidopsis thaliana OX=370...	[more]
Q8Z0M8	1.0e-21	40.00	Ribosome-binding factor A OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576...	[more]
Q3M9Q8	1.0e-21	40.67	Ribosome-binding factor A OS=Trichormus variabilis (strain ATCC 29413 / PCC 7937...	[more]
B8HWS1	8.7e-21	39.42	Ribosome-binding factor A OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) OX=39...	[more]
Q93LL7	1.1e-20	40.69	Ribosome-binding factor A OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) ...	[more]

BLAST of CsaV3_2G015360 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LIX7	2.6e-116	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G252090 PE=3 SV=1	[more]
A0A1S4E1P3	3.6e-110	94.30	probable ribosome-binding factor A, chloroplastic OS=Cucumis melo OX=3656 GN=LOC...	[more]
A0A5A7TVW4	3.6e-110	94.30	Putative ribosome-binding factor A OS=Cucumis melo var. makuwa OX=1194695 GN=E56...	[more]
A0A6J1G8H2	7.7e-89	82.59	probable ribosome-binding factor A, chloroplastic OS=Cucurbita moschata OX=3662 ...	[more]
A0A6J1KXB5	9.5e-87	80.36	probable ribosome-binding factor A, chloroplastic OS=Cucurbita maxima OX=3661 GN...	[more]

BLAST of CsaV3_2G015360 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G34730.1	1.5e-63	77.06	ribosome-binding factor A family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000238	Ribosome-binding factor A	TIGRFAM	TIGR00082	TIGR00082	coord: 60..186 e-value: 2.4E-23 score: 80.9
IPR000238	Ribosome-binding factor A	PFAM	PF02033	RBFA	coord: 65..182 e-value: 1.9E-27 score: 95.8
IPR000238	Ribosome-binding factor A	PANTHER	PTHR33515	RIBOSOME-BINDING FACTOR A, CHLOROPLASTIC-RELATED	coord: 52..225
IPR000238	Ribosome-binding factor A	HAMAP	MF_00003	RbfA	coord: 64..182 score: 22.034575
IPR015946	K homology domain-like, alpha/beta	GENE3D	3.30.300.20		coord: 60..176 e-value: 5.0E-35 score: 121.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 190..219
IPR020053	Ribosome-binding factor A, conserved site	PROSITE	PS01319	RBFA	coord: 148..169
IPR023799	Ribosome-binding factor A domain superfamily	SUPERFAMILY	89919	Ribosome-binding factor A, RbfA	coord: 60..185

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_2G015360.1	CsaV3_2G015360.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006364	rRNA processing