CsaV3_2G015230 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_2G015230
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Glycosyl hydrolase family protein
Location	chr2: 12714517 .. 12714998 (+)
RNA-Seq Expression	CsaV3_2G015230
Synteny	CsaV3_2G015230

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGGTGATGGTGGTTTTACTCTGTTGCTGGGCAGCTTTGGTGGCTGTTGAGGAAGACTGTCAAGTATAAGGACCCTATACAGCCACTTAACATCCGGATCAAGGACCTGATGGAATGAATGACTCTAGCAGATAAGGTTGGGCAGATGGCACAGTTGGATTCTTCGGCCACCACACCGGAAATCATAAGAGATTACTCCATTGGCAGTGTGCAACGGAGGCAGTACCCCATCTCTACAGGCTACTGCACAGGAGTGGATTGACATGGTGAATTCCTTCCAGCAGGCCACATTATCAAGTAGGCTTGGAATTCCAATAATGTATGGTATTGATGCCGTCCATGGTCACAATGGCGTCTACAATGCTACCATCTTCCTCAACAATGTCGGTCTTGGTGCAACCAGGCGAAAATATATGAGAGGAGGATCTAAACTTTGTTTTCACAAACTCCCAATGCCATTTGGAGATATTGGTGGTTAA

mRNA sequence

ATGAAGGTGATGGTGGTTTTACTCTGTTGCTGGGCAGCTTTGGTGGCTGTTGAGGAAGACTGTCAAGCTACTGCACAGGAGTGGATTGACATGGTGAATTCCTTCCAGCAGGCCACATTATCAAGTAGGCTTGGAATTCCAATAATGTATGGTATTGATGCCGTCCATGGTCACAATGGCGTCTACAATGCTACCATCTTCCTCAACAATGTCGGTCTTGGTGCAACCAGGCGAAAATATATGAGAGGAGGATCTAAACTTTGTTTTCACAAACTCCCAATGCCATTTGGAGATATTGGTGGTTAA

Coding sequence (CDS)

ATGAAGGTGATGGTGGTTTTACTCTGTTGCTGGGCAGCTTTGGTGGCTGTTGAGGAAGACTGTCAAGCTACTGCACAGGAGTGGATTGACATGGTGAATTCCTTCCAGCAGGCCACATTATCAAGTAGGCTTGGAATTCCAATAATGTATGGTATTGATGCCGTCCATGGTCACAATGGCGTCTACAATGCTACCATCTTCCTCAACAATGTCGGTCTTGGTGCAACCAGGCGAAAATATATGAGAGGAGGATCTAAACTTTGTTTTCACAAACTCCCAATGCCATTTGGAGATATTGGTGGTTAA

Protein sequence

MKVMVVLLCCWAALVAVEEDCQATAQEWIDMVNSFQQATLSSRLGIPIMYGIDAVHGHNGVYNATIFLNNVGLGATRRKYMRGGSKLCFHKLPMPFGDIGG*

Homology

[Close]

BLAST of CsaV3_2G015230 vs. NCBI nr
Match: KAE8651881.1 (hypothetical protein Csa_006705 [Cucumis sativus])

HSP 1 Score: 212.6 bits (540), Expect = 1.6e-51
Identity = 101/101 (100.00%), Postives = 101/101 (100.00%), Query Frame = 0


Query: 1   MKVMVVLLCCWAALVAVEEDCQATAQEWIDMVNSFQQATLSSRLGIPIMYGIDAVHGHNG 60
           MKVMVVLLCCWAALVAVEEDCQATAQEWIDMVNSFQQATLSSRLGIPIMYGIDAVHGHNG
Sbjct: 1   MKVMVVLLCCWAALVAVEEDCQATAQEWIDMVNSFQQATLSSRLGIPIMYGIDAVHGHNG 60

Query: 61  VYNATIFLNNVGLGATRRKYMRGGSKLCFHKLPMPFGDIGG 102
           VYNATIFLNNVGLGATRRKYMRGGSKLCFHKLPMPFGDIGG
Sbjct: 61  VYNATIFLNNVGLGATRRKYMRGGSKLCFHKLPMPFGDIGG 101

[Close]

BLAST of CsaV3_2G015230 vs. NCBI nr
Match: KAA0045630.1 (lysosomal beta glucosidase-like [Cucumis melo var. makuwa])

HSP 1 Score: 107.1 bits (266), Expect = 9.3e-20
Identity = 69/152 (45.39%), Postives = 76/152 (50.00%), Query Frame = 0


Query: 1   MKVMVVLLCCWAALVAVEED---------------------------------------- 60
           MKVMVVLLCCWAALVAV+ED                                        
Sbjct: 1   MKVMVVLLCCWAALVAVDEDYVMYKDPIQPLNIRIKDLMDRMTLADKVGQMAQLDSSAIT 60

Query: 61  ---------------------CQATAQEWIDMVNSFQQATLSSRLGIPIMYGIDAVHGHN 84
                                 +ATAQEWI MVNSFQQATLSSRLGIPIMYGIDAVHGHN
Sbjct: 61  PEIIRDYSIGSVLSSGGSTPSLKATAQEWIAMVNSFQQATLSSRLGIPIMYGIDAVHGHN 120

[Close]

BLAST of CsaV3_2G015230 vs. NCBI nr
Match: TYK02625.1 (lysosomal beta glucosidase-like [Cucumis melo var. makuwa])

HSP 1 Score: 107.1 bits (266), Expect = 9.3e-20
Identity = 69/152 (45.39%), Postives = 76/152 (50.00%), Query Frame = 0


Query: 1   MKVMVVLLCCWAALVAVEED---------------------------------------- 60
           MKVMVVLLCCWAALVAV+ED                                        
Sbjct: 1   MKVMVVLLCCWAALVAVDEDYVMYKDPIQPLNIRIKDLMDRMTLADKVGQMAQLDSSAIT 60

Query: 61  ---------------------CQATAQEWIDMVNSFQQATLSSRLGIPIMYGIDAVHGHN 84
                                 +ATAQEWI MVNSFQQATLSSRLGIPIMYGIDAVHGHN
Sbjct: 61  PEIIRDYSIGSVLSSGGSTPSLKATAQEWIAMVNSFQQATLSSRLGIPIMYGIDAVHGHN 120

[Close]

BLAST of CsaV3_2G015230 vs. NCBI nr
Match: XP_016902614.1 (PREDICTED: LOW QUALITY PROTEIN: lysosomal beta glucosidase-like [Cucumis melo])

HSP 1 Score: 104.8 bits (260), Expect = 4.6e-19
Identity = 64/133 (48.12%), Postives = 69/133 (51.88%), Query Frame = 0


Query: 1   MKVMVVLLCCWAALVAVEED---------------------------------------- 60
           MKVMVVLLCCWAALVAV+ED                                        
Sbjct: 1   MKVMVVLLCCWAALVAVDEDYVMYKDPIQPLNIRIKDLMDRMTLADKVGQMAQLDSSAIT 60

Query: 61  ---------------------CQATAQEWIDMVNSFQQATLSSRLGIPIMYGIDAVHGHN 73
                                 +ATAQEWI MVNSFQQATLSSRLGIPIMYGIDAVHGHN
Sbjct: 61  PEIIRDYSIGSVLSSGGSTPSLKATAQEWIAMVNSFQQATLSSRLGIPIMYGIDAVHGHN 120

[Close]

BLAST of CsaV3_2G015230 vs. NCBI nr
Match: XP_022146225.1 (uncharacterized protein LOC111015489 [Momordica charantia])

HSP 1 Score: 104.4 bits (259), Expect = 6.0e-19
Identity = 49/56 (87.50%), Postives = 53/56 (94.64%), Query Frame = 0


Query: 22  QATAQEWIDMVNSFQQATLSSRLGIPIMYGIDAVHGHNGVYNATIFLNNVGLGATR 78
           QATAQEWIDMVNSFQQ +LSSRLGIP++YGIDAVHGHN VYNATIF +NVGLGATR
Sbjct: 89  QATAQEWIDMVNSFQQGSLSSRLGIPMIYGIDAVHGHNNVYNATIFPHNVGLGATR 144

[Close]

BLAST of CsaV3_2G015230 vs. ExPASy Swiss-Prot
Match: Q23892 (Lysosomal beta glucosidase OS=Dictyostelium discoideum OX=44689 GN=gluA PE=1 SV=2)

HSP 1 Score: 52.8 bits (125), Expect = 2.7e-06
Identity = 24/50 (48.00%), Postives = 35/50 (70.00%), Query Frame = 0


Query: 28  WIDMVNSFQQATL-SSRLGIPIMYGIDAVHGHNGVYNATIFLNNVGLGAT 77
           W+DM+N+ Q   +  S   IP++YG+D+VHG N V+ AT+F +N GL AT
Sbjct: 150 WLDMINTIQTIVIEGSPNKIPMIYGLDSVHGANYVHKATLFPHNTGLAAT 199

[Close]

BLAST of CsaV3_2G015230 vs. ExPASy Swiss-Prot
Match: A7LXU3 (Beta-glucosidase BoGH3B OS=Bacteroides ovatus (strain ATCC 8483 / DSM 1896 / JCM 5824 / NCTC 11153) OX=411476 GN=BACOVA_02659 PE=1 SV=1)

HSP 1 Score: 45.8 bits (107), Expect = 3.3e-04
Identity = 19/63 (30.16%), Postives = 37/63 (58.73%), Query Frame = 0


Query: 26  QEWIDMVNSFQQATLSSRLGIPIMYGIDAVHGHNGVYNATIFLNNVGLGAT-RRKYMRGG 85
           ++W + +   Q+ ++   +GIP +YG+D +HG     + T+F   + +GAT  R+  R G
Sbjct: 105 EKWAEAIKQIQEKSM-KEIGIPCIYGVDQIHGTTYTLDGTMFPQGINMGATFNRELTRRG 164

Query: 86  SKL 88
           +K+
Sbjct: 165 AKI 166

[Close]

BLAST of CsaV3_2G015230 vs. ExPASy TrEMBL
Match: A0A5A7TR74 (Lysosomal beta glucosidase-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold243G001410 PE=3 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 4.5e-20
Identity = 69/152 (45.39%), Postives = 76/152 (50.00%), Query Frame = 0


Query: 1   MKVMVVLLCCWAALVAVEED---------------------------------------- 60
           MKVMVVLLCCWAALVAV+ED                                        
Sbjct: 1   MKVMVVLLCCWAALVAVDEDYVMYKDPIQPLNIRIKDLMDRMTLADKVGQMAQLDSSAIT 60

Query: 61  ---------------------CQATAQEWIDMVNSFQQATLSSRLGIPIMYGIDAVHGHN 84
                                 +ATAQEWI MVNSFQQATLSSRLGIPIMYGIDAVHGHN
Sbjct: 61  PEIIRDYSIGSVLSSGGSTPSLKATAQEWIAMVNSFQQATLSSRLGIPIMYGIDAVHGHN 120

[Close]

BLAST of CsaV3_2G015230 vs. ExPASy TrEMBL
Match: A0A5D3BU50 (Lysosomal beta glucosidase-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold280G00330 PE=3 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 4.5e-20
Identity = 69/152 (45.39%), Postives = 76/152 (50.00%), Query Frame = 0


Query: 1   MKVMVVLLCCWAALVAVEED---------------------------------------- 60
           MKVMVVLLCCWAALVAV+ED                                        
Sbjct: 1   MKVMVVLLCCWAALVAVDEDYVMYKDPIQPLNIRIKDLMDRMTLADKVGQMAQLDSSAIT 60

Query: 61  ---------------------CQATAQEWIDMVNSFQQATLSSRLGIPIMYGIDAVHGHN 84
                                 +ATAQEWI MVNSFQQATLSSRLGIPIMYGIDAVHGHN
Sbjct: 61  PEIIRDYSIGSVLSSGGSTPSLKATAQEWIAMVNSFQQATLSSRLGIPIMYGIDAVHGHN 120

[Close]

BLAST of CsaV3_2G015230 vs. ExPASy TrEMBL
Match: A0A1S4E304 (LOW QUALITY PROTEIN: lysosomal beta glucosidase-like OS=Cucumis melo OX=3656 GN=LOC103499742 PE=3 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 2.2e-19
Identity = 64/133 (48.12%), Postives = 69/133 (51.88%), Query Frame = 0


Query: 1   MKVMVVLLCCWAALVAVEED---------------------------------------- 60
           MKVMVVLLCCWAALVAV+ED                                        
Sbjct: 1   MKVMVVLLCCWAALVAVDEDYVMYKDPIQPLNIRIKDLMDRMTLADKVGQMAQLDSSAIT 60

Query: 61  ---------------------CQATAQEWIDMVNSFQQATLSSRLGIPIMYGIDAVHGHN 73
                                 +ATAQEWI MVNSFQQATLSSRLGIPIMYGIDAVHGHN
Sbjct: 61  PEIIRDYSIGSVLSSGGSTPSLKATAQEWIAMVNSFQQATLSSRLGIPIMYGIDAVHGHN 120

[Close]

BLAST of CsaV3_2G015230 vs. ExPASy TrEMBL
Match: A0A6J1CWQ0 (uncharacterized protein LOC111015489 OS=Momordica charantia OX=3673 GN=LOC111015489 PE=3 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 2.9e-19
Identity = 49/56 (87.50%), Postives = 53/56 (94.64%), Query Frame = 0


Query: 22  QATAQEWIDMVNSFQQATLSSRLGIPIMYGIDAVHGHNGVYNATIFLNNVGLGATR 78
           QATAQEWIDMVNSFQQ +LSSRLGIP++YGIDAVHGHN VYNATIF +NVGLGATR
Sbjct: 89  QATAQEWIDMVNSFQQGSLSSRLGIPMIYGIDAVHGHNNVYNATIFPHNVGLGATR 144

[Close]

BLAST of CsaV3_2G015230 vs. ExPASy TrEMBL
Match: A0A6J1FXT0 (uncharacterized protein LOC111448193 OS=Cucurbita moschata OX=3662 GN=LOC111448193 PE=3 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 5.5e-18
Identity = 48/56 (85.71%), Postives = 51/56 (91.07%), Query Frame = 0


Query: 22  QATAQEWIDMVNSFQQATLSSRLGIPIMYGIDAVHGHNGVYNATIFLNNVGLGATR 78
           QATAQ WIDMVNSFQQ +LSSRLGIPIMYGIDAVHGH  VYNAT+F +NVGLGATR
Sbjct: 89  QATAQVWIDMVNSFQQGSLSSRLGIPIMYGIDAVHGHGIVYNATVFPHNVGLGATR 144

[Close]

BLAST of CsaV3_2G015230 vs. TAIR 10
Match: AT5G04885.1 (Glycosyl hydrolase family protein )

HSP 1 Score: 92.0 bits (227), Expect = 2.9e-19
Identity = 40/56 (71.43%), Postives = 49/56 (87.50%), Query Frame = 0


Query: 22  QATAQEWIDMVNSFQQATLSSRLGIPIMYGIDAVHGHNGVYNATIFLNNVGLGATR 78
           +A+AQ W+DM+N +Q+  L SRLGIP++YGIDAVHGHN VYNATIF +NVGLGATR
Sbjct: 89  EASAQNWVDMINEYQKGALVSRLGIPMIYGIDAVHGHNNVYNATIFPHNVGLGATR 144

[Close]

BLAST of CsaV3_2G015230 vs. TAIR 10
Match: AT5G20950.1 (Glycosyl hydrolase family protein )

HSP 1 Score: 86.3 bits (212), Expect = 1.6e-17
Identity = 38/56 (67.86%), Postives = 48/56 (85.71%), Query Frame = 0


Query: 22  QATAQEWIDMVNSFQQATLSSRLGIPIMYGIDAVHGHNGVYNATIFLNNVGLGATR 78
           +AT + W++MVN  Q+A+LS+RLGIP++YGIDAVHGHN VY ATIF +NVGLG TR
Sbjct: 85  KATPETWVNMVNEIQKASLSTRLGIPMIYGIDAVHGHNNVYGATIFPHNVGLGVTR 140

[Close]

BLAST of CsaV3_2G015230 vs. TAIR 10
Match: AT5G20950.2 (Glycosyl hydrolase family protein )

HSP 1 Score: 86.3 bits (212), Expect = 1.6e-17
Identity = 38/56 (67.86%), Postives = 48/56 (85.71%), Query Frame = 0


Query: 22  QATAQEWIDMVNSFQQATLSSRLGIPIMYGIDAVHGHNGVYNATIFLNNVGLGATR 78
           +AT + W++MVN  Q+A+LS+RLGIP++YGIDAVHGHN VY ATIF +NVGLG TR
Sbjct: 85  KATPETWVNMVNEIQKASLSTRLGIPMIYGIDAVHGHNNVYGATIFPHNVGLGVTR 140

[Close]

BLAST of CsaV3_2G015230 vs. TAIR 10
Match: AT5G20940.1 (Glycosyl hydrolase family protein )

HSP 1 Score: 83.2 bits (204), Expect = 1.3e-16
Identity = 37/52 (71.15%), Postives = 44/52 (84.62%), Query Frame = 0


Query: 26  QEWIDMVNSFQQATLSSRLGIPIMYGIDAVHGHNGVYNATIFLNNVGLGATR 78
           + W++MVN  Q+  LS+RLGIPI+YGIDAVHGHN VYNATIF +NVGLG TR
Sbjct: 95  EAWVNMVNEVQKKALSTRLGIPIIYGIDAVHGHNTVYNATIFPHNVGLGVTR 146

[Close]

BLAST of CsaV3_2G015230 vs. TAIR 10
Match: AT3G47050.1 (Glycosyl hydrolase family protein )

HSP 1 Score: 81.6 bits (200), Expect = 3.9e-16
Identity = 36/55 (65.45%), Postives = 45/55 (81.82%), Query Frame = 0


Query: 23  ATAQEWIDMVNSFQQATLSSRLGIPIMYGIDAVHGHNGVYNATIFLNNVGLGATR 78
           A +  W DM++ FQ++ L SRLGIPI+YGIDAVHG+N VY ATIF +N+GLGATR
Sbjct: 70  AKSSNWADMIDGFQRSALESRLGIPIIYGIDAVHGNNDVYGATIFPHNIGLGATR 124

The following BLAST results are available for this feature:

BLAST of CsaV3_2G015230 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8651881.1	1.6e-51	100.00	hypothetical protein Csa_006705 [Cucumis sativus]	[more]
KAA0045630.1	9.3e-20	45.39	lysosomal beta glucosidase-like [Cucumis melo var. makuwa]	[more]
TYK02625.1	9.3e-20	45.39	lysosomal beta glucosidase-like [Cucumis melo var. makuwa]	[more]
XP_016902614.1	4.6e-19	48.12	PREDICTED: LOW QUALITY PROTEIN: lysosomal beta glucosidase-like [Cucumis melo]	[more]
XP_022146225.1	6.0e-19	87.50	uncharacterized protein LOC111015489 [Momordica charantia]	[more]

BLAST of CsaV3_2G015230 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q23892	2.7e-06	48.00	Lysosomal beta glucosidase OS=Dictyostelium discoideum OX=44689 GN=gluA PE=1 SV=...	[more]
A7LXU3	3.3e-04	30.16	Beta-glucosidase BoGH3B OS=Bacteroides ovatus (strain ATCC 8483 / DSM 1896 / JCM...	[more]

BLAST of CsaV3_2G015230 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TR74	4.5e-20	45.39	Lysosomal beta glucosidase-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_...	[more]
A0A5D3BU50	4.5e-20	45.39	Lysosomal beta glucosidase-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A1S4E304	2.2e-19	48.12	LOW QUALITY PROTEIN: lysosomal beta glucosidase-like OS=Cucumis melo OX=3656 GN=...	[more]
A0A6J1CWQ0	2.9e-19	87.50	uncharacterized protein LOC111015489 OS=Momordica charantia OX=3673 GN=LOC111015...	[more]
A0A6J1FXT0	5.5e-18	85.71	uncharacterized protein LOC111448193 OS=Cucurbita moschata OX=3662 GN=LOC1114481...	[more]

BLAST of CsaV3_2G015230 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G04885.1	2.9e-19	71.43	Glycosyl hydrolase family protein	[more]
AT5G20950.1	1.6e-17	67.86	Glycosyl hydrolase family protein	[more]
AT5G20950.2	1.6e-17	67.86	Glycosyl hydrolase family protein	[more]
AT5G20940.1	1.3e-16	71.15	Glycosyl hydrolase family protein	[more]
AT3G47050.1	3.9e-16	65.45	Glycosyl hydrolase family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036962	Glycoside hydrolase, family 3, N-terminal domain superfamily	GENE3D	3.20.20.300		coord: 12..82 e-value: 4.5E-13 score: 51.0
IPR001764	Glycoside hydrolase, family 3, N-terminal	PFAM	PF00933	Glyco_hydro_3	coord: 27..78 e-value: 4.9E-6 score: 26.2
None	No IPR available	PANTHER	PTHR30620:SF91	BETA-D-GLUCOSIDE GLUCOHYDROLASE	coord: 21..78
None	No IPR available	PANTHER	PTHR30620	PERIPLASMIC BETA-GLUCOSIDASE-RELATED	coord: 21..78
IPR017853	Glycoside hydrolase superfamily	SUPERFAMILY	51445	(Trans)glycosidases	coord: 21..78

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_2G015230.1	CsaV3_2G015230.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0005975	carbohydrate metabolic process
molecular_function	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds