CsaV3_2G014180 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_2G014180
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr2: 11820752 .. 11821017 (-)
RNA-Seq ExpressionCsaV3_2G014180
SyntenyCsaV3_2G014180
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
CAATCGTATCTTATGCAAACAACAATCAACTAGGTAATGCTTTTGCATCTGTGAAAACTGGTGCTAATGCTGGGCTTGCCACTAAGGCTTCCAACAATGTAATTGTTGTTATGTCTAACACCGTCAATGCTTCTCTTGTGATGGCTGCAACATTGCTTGCTGCAACAATTTCCTATATTGTCATAGCAATTAACGGTGATAATGTCCCTCAAGCTGATGATATGAATCATGCTGAGAATGAAGATGCTACTCTCAAGATGTGTTAA

mRNA sequence

ATCGTATCTTATGCAAACAACAATCAACTAGGTAATGCTTTTGCATCTGTGAAAACTGGTGCTAATGCTGGGCTTGCCACTAAGGCTTCCAACAATGTAATTGTTGTTATGTCTAACACCGTCAATGCTTCTCTTGTGATGGCTGCAACATTGCTTGCTGCAACAATTTCCTATATTGTCATAGCAATTAACGGTGATAATGTCCCTCAAGCTGATGATATGAATCATGCTGAGAATGAAGATGCTACTCTCAAGATGTGTTA

Coding sequence (CDS)

ATCGTATCTTATGCAAACAACAATCAACTAGGTAATGCTTTTGCATCTGTGAAAACTGGTGCTAATGCTGGGCTTGCCACTAAGGCTTCCAACAATGTAATTGTTGTTATGTCTAACACCGTCAATGCTTCTCTTGTGATGGCTGCAACATTGCTTGCTGCAACAATTTCCTATATTGTCATAGCAATTAACGGTGATAATGTCCCTCAAGCTGATGATATGAATCATGCTGAGAATGAAGATGCTACTCTCAAGATGTGTTA

Protein sequence

IVSYANNNQLGNAFASVKTGANAGLATKASNNVIVVMSNTVNASLVMAATLLAATISYIVIAINGDNVPQADDMNHAENEDATLKMCX
Homology
[Close]
BLAST of CsaV3_2G014180 vs. NCBI nr
Match: KAE8651857.1 (hypothetical protein Csa_023625, partial [Cucumis sativus])

HSP 1 Score: 160.2 bits (404), Expect = 8.0e-36
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 0 

Query: 1  IVSYANNNQLGNAFASVKTGANAGLATKASNNVIVVMSNTVNASLVMAATLLAATISYIV 60
          IVSYANNNQLGNAFASVKTGANAGLATKASNNVIVVMSNTVNASLVMAATLLAATISYIV
Sbjct: 1  IVSYANNNQLGNAFASVKTGANAGLATKASNNVIVVMSNTVNASLVMAATLLAATISYIV 60

Query: 61 IAINGDNVPQADDMNHAENEDATLKMC 88
          IAINGDNVPQADDMNHAENEDATLKMC
Sbjct: 61 IAINGDNVPQADDMNHAENEDATLKMC 87

[Close]
BLAST of CsaV3_2G014180 vs. NCBI nr
Match: KAA0039384.1 (hypothetical protein E6C27_scaffold64G001870 [Cucumis melo var. makuwa] >TYK00572.1 hypothetical protein E5676_scaffold169G001880 [Cucumis melo var. makuwa])

HSP 1 Score: 67.4 bits (163), Expect = 7.0e-08
Identity = 44/82 (53.66%), Postives = 57/82 (69.51%), Query Frame = 0 

Query: 2   VSYANNNQLGNAF-ASVKTGANAGLATKASNNVIVVMSNTVNASLVMAATLLAATISYI- 61
           VS  NNNQL +AF +SV+  A+A LAT+ASNNVI  + NT +ASL MAA  LAA  S+I 
Sbjct: 24  VSSVNNNQLASAFESSVEADASAALATEASNNVIAAVPNTADASLAMAAASLAAAASHIA 83

Query: 62  VIAINGDNVPQADDMNHAENED 82
             A+NG N  Q DD+N A +++
Sbjct: 84  TAAVNGANAAQVDDLNQAGDQN 105

[Close]
BLAST of CsaV3_2G014180 vs. ExPASy TrEMBL
Match: A0A0A0LKZ8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G236110 PE=4 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 3.9e-36
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 0 

Query: 1   IVSYANNNQLGNAFASVKTGANAGLATKASNNVIVVMSNTVNASLVMAATLLAATISYIV 60
           IVSYANNNQLGNAFASVKTGANAGLATKASNNVIVVMSNTVNASLVMAATLLAATISYIV
Sbjct: 40  IVSYANNNQLGNAFASVKTGANAGLATKASNNVIVVMSNTVNASLVMAATLLAATISYIV 99

Query: 61  IAINGDNVPQADDMNHAENEDATLKMC 88
           IAINGDNVPQADDMNHAENEDATLKMC
Sbjct: 100 IAINGDNVPQADDMNHAENEDATLKMC 126

[Close]
BLAST of CsaV3_2G014180 vs. ExPASy TrEMBL
Match: A0A5A7T7D4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold169G001880 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 3.4e-08
Identity = 44/82 (53.66%), Postives = 57/82 (69.51%), Query Frame = 0 

Query: 2   VSYANNNQLGNAF-ASVKTGANAGLATKASNNVIVVMSNTVNASLVMAATLLAATISYI- 61
           VS  NNNQL +AF +SV+  A+A LAT+ASNNVI  + NT +ASL MAA  LAA  S+I 
Sbjct: 24  VSSVNNNQLASAFESSVEADASAALATEASNNVIAAVPNTADASLAMAAASLAAAASHIA 83

Query: 62  VIAINGDNVPQADDMNHAENED 82
             A+NG N  Q DD+N A +++
Sbjct: 84  TAAVNGANAAQVDDLNQAGDQN 105

The following BLAST results are available for this feature:
BLAST of CsaV3_2G014180 vs. NCBI nr
Match NameE-valueIdentityDescription
KAE8651857.18.0e-36100.00hypothetical protein Csa_023625, partial [Cucumis sativus][more]
KAA0039384.17.0e-0853.66hypothetical protein E6C27_scaffold64G001870 [Cucumis melo var. makuwa] >TYK0057... [more]
BLAST of CsaV3_2G014180 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_2G014180 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LKZ83.9e-36100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G236110 PE=4 SV=1[more]
A0A5A7T7D43.4e-0853.66Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
BLAST of CsaV3_2G014180 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_2G014180.1CsaV3_2G014180.1mRNA