CsaV3_2G013430 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_2G013430
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	DNA-directed RNA polymerase III subunit RPC9
Location	chr2: 11037965 .. 11039675 (-)
RNA-Seq Expression	CsaV3_2G013430
Synteny	CsaV3_2G013430

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGATGTCAGTTCTAAGTCCTCATTCTTTCTGTCATTCGTTTCAATATTCTTCAAATTATTTTATTCCACGATTTCTGTTAGACATCGATGTCAAATTACTCTCGCTAACAATGTGCTCGGAAGTATTGTTTGCAGATTAGAGGCCAACGCAGGCCCTCTTACGAATTTTGAGGTGCTCGACTTTTTAAGATCAAAAGGGGCAGCTAAGGATCCCACTAGGGTTCTTGCGAAAGTGTTACCATCTGAATACAAGGTTATATTTTCCCCTTCTTTTGTGCTGGATTACGGTTGATGTTGCAGGTTTTCATTAATATATTTTTTTTTATATAGGTTTTTGATTATTTGAATCAAACTTCTGCTTGTAATCAAACGAGAGAAGCCATCATTAATTTTGCTGAGAAGTCCAAAGAGTATGATCTCGCGAAAGCTGAAATTCTCAATATCATCAATTTGCGGCCTACTACCCCGGTTGAGCTATTTCCGGTAATTTCCCCCTTTCCATGATAGTTCACAGTAGTTCTTTCCCGAATTTTTAAAATTAATATTATGCTATGTTTTTGTATGTACTCTCTGTTTTAAACCCATCTTATTTCTTTTCATTGAGTCTTTATGTTAGAAGGTCAAGAAACTGTGAATGCCTTAGAAAGTTTGGTGGACAGAGGAAATCCATAACATTTCATCTATTTTGAAATGATGCCTTTTAATGTGTTGGAAGAGAATTACGTAGTCTTTGAAGCCTTTCTTTTTTTTTTTTTTTTTTTTTTTTTCTGTTGACGATACAAAAGCTTTAGATTCTCTGGCTATGAACCACATTTGTCTGATTGTTAAGAACTTCATGGAGTAGGTGTCAGAAATTGTAGTTAAAATTCAACTATAGTCATCTTTATCAGTTAATCTGTAGTTCTGTAAAGACTGTTGGGGGTAGTCGGAAGTATTTCTAAATAGCATTCGGCTTTCTGGACAAAAGTTCTACTCGTGGGTTAAGTTGCTTTAGAAATAGTATTGTGAAAGTCTTTTTTTTTTTCTTTCCAAAACGATGGACCCTCGTATATTCTGCAAAATATATAACTTAATCTTTGCAAGCTGCCCAAAAATTATACTTGAAAATATTTCTATAAATAAAAATAAAGAGCTCTTTCCGCCGTACCTCAGAGGTACCTATATAGCACTTATGGTAATTTACTTCAAAAACGTTTTTTTGGTTCTTAAGTTTTCTGCTAGAGCCTTCAACTTAAGAGTTAAGACTTCGAGATACCTCCCAACATTCCATAACTCATGTGATCTAATCTTGGAGTATTCTCAGTAGGCAAAGTTGTTTTTCAAAATAGCTTCCGAACAATTTCTTGTTGGTGGTTTTACCATGGTCCCTTTTTTATGTTGGGAACGTGGGACGCTTTGTTTGAGAATTCTTCACATAAGAATTTGATGGACGAAGGAAATGAAAATATTGATTTGGATGAGTGAAATGTCGATTAATTTGGAGTCTATTACTTTTGTTTCTAGGTTATAGAGAATTGTGATGCTCGTATGGGAGAAGGAGCAACTGAAAGAATGGAAGAGATTGGGTTGATGGTGGAACACGTATTCCCTACACCACAAAATGAGCCGACGTTTGAAGTAACTCCAAAGGAAGGTAACGAGGCCGAAGCCATGGAAGTGCAAGAAGGAGCTGGGGATGCTGATGAAGAACCCATGCAAACCACTTGA

mRNA sequence

ATGAAGATATTAGAGGCCAACGCAGGCCCTCTTACGAATTTTGAGGTGCTCGACTTTTTAAGATCAAAAGGGGCAGCTAAGGATCCCACTAGGGTTCTTGCGAAAGTGTTACCATCTGAATACAAGGTTTTTGATTATTTGAATCAAACTTCTGCTTGTAATCAAACGAGAGAAGCCATCATTAATTTTGCTGAGAAGTCCAAAGAGTATGATCTCGCGAAAGCTGAAATTCTCAATATCATCAATTTGCGGCCTACTACCCCGGTTGAGCTATTTCCGGTTATAGAGAATTGTGATGCTCGTATGGGAGAAGGAGCAACTGAAAGAATGGAAGAGATTGGGTTGATGGTGGAACACGTATTCCCTACACCACAAAATGAGCCGACGTTTGAAGTAACTCCAAAGGAAGGTAACGAGGCCGAAGCCATGGAAGTGCAAGAAGGAGCTGGGGATGCTGATGAAGAACCCATGCAAACCACTTGA

Coding sequence (CDS)

ATGAAGATATTAGAGGCCAACGCAGGCCCTCTTACGAATTTTGAGGTGCTCGACTTTTTAAGATCAAAAGGGGCAGCTAAGGATCCCACTAGGGTTCTTGCGAAAGTGTTACCATCTGAATACAAGGTTTTTGATTATTTGAATCAAACTTCTGCTTGTAATCAAACGAGAGAAGCCATCATTAATTTTGCTGAGAAGTCCAAAGAGTATGATCTCGCGAAAGCTGAAATTCTCAATATCATCAATTTGCGGCCTACTACCCCGGTTGAGCTATTTCCGGTTATAGAGAATTGTGATGCTCGTATGGGAGAAGGAGCAACTGAAAGAATGGAAGAGATTGGGTTGATGGTGGAACACGTATTCCCTACACCACAAAATGAGCCGACGTTTGAAGTAACTCCAAAGGAAGGTAACGAGGCCGAAGCCATGGAAGTGCAAGAAGGAGCTGGGGATGCTGATGAAGAACCCATGCAAACCACTTGA

Protein sequence

MKILEANAGPLTNFEVLDFLRSKGAAKDPTRVLAKVLPSEYKVFDYLNQTSACNQTREAIINFAEKSKEYDLAKAEILNIINLRPTTPVELFPVIENCDARMGEGATERMEEIGLMVEHVFPTPQNEPTFEVTPKEGNEAEAMEVQEGAGDADEEPMQTT*

Homology

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BLAST of CsaV3_2G013430 vs. NCBI nr
Match: XP_004145392.1 (DNA-directed RNA polymerase III subunit rpc9 [Cucumis sativus] >XP_031736825.1 DNA-directed RNA polymerase III subunit rpc9 [Cucumis sativus] >KGN61665.1 hypothetical protein Csa_006033 [Cucumis sativus])

HSP 1 Score: 318.9 bits (816), Expect = 2.5e-83
Identity = 160/160 (100.00%), Postives = 160/160 (100.00%), Query Frame = 0


Query: 1   MKILEANAGPLTNFEVLDFLRSKGAAKDPTRVLAKVLPSEYKVFDYLNQTSACNQTREAI 60
           MKILEANAGPLTNFEVLDFLRSKGAAKDPTRVLAKVLPSEYKVFDYLNQTSACNQTREAI
Sbjct: 1   MKILEANAGPLTNFEVLDFLRSKGAAKDPTRVLAKVLPSEYKVFDYLNQTSACNQTREAI 60

Query: 61  INFAEKSKEYDLAKAEILNIINLRPTTPVELFPVIENCDARMGEGATERMEEIGLMVEHV 120
           INFAEKSKEYDLAKAEILNIINLRPTTPVELFPVIENCDARMGEGATERMEEIGLMVEHV
Sbjct: 61  INFAEKSKEYDLAKAEILNIINLRPTTPVELFPVIENCDARMGEGATERMEEIGLMVEHV 120

Query: 121 FPTPQNEPTFEVTPKEGNEAEAMEVQEGAGDADEEPMQTT 161
           FPTPQNEPTFEVTPKEGNEAEAMEVQEGAGDADEEPMQTT
Sbjct: 121 FPTPQNEPTFEVTPKEGNEAEAMEVQEGAGDADEEPMQTT 160

[Close]

BLAST of CsaV3_2G013430 vs. NCBI nr
Match: XP_008449317.1 (PREDICTED: DNA-directed RNA polymerase III subunit RPC9-like [Cucumis melo] >KAA0057449.1 DNA-directed RNA polymerase III subunit RPC9-like [Cucumis melo var. makuwa] >TYK30148.1 DNA-directed RNA polymerase III subunit RPC9-like [Cucumis melo var. makuwa])

HSP 1 Score: 284.3 bits (726), Expect = 6.7e-73
Identity = 142/160 (88.75%), Postives = 147/160 (91.88%), Query Frame = 0


Query: 1   MKILEANAGPLTNFEVLDFLRSKGAAKDPTRVLAKVLPSEYKVFDYLNQTSACNQTREAI 60
           MKILEANAGPLTNFEVLDFLRSKGAAKDPTRVLAKVLPSEYKVFDYLNQT ACNQTREA+
Sbjct: 1   MKILEANAGPLTNFEVLDFLRSKGAAKDPTRVLAKVLPSEYKVFDYLNQTPACNQTREAV 60

Query: 61  INFAEKSKEYDLAKAEILNIINLRPTTPVELFPVIENCDARMGEGATERMEEIGLMVEHV 120
           I F EKSKEYDLAKAEILNIINLRP TPVELFP+IENCD RMGE ATERMEE+G MVEHV
Sbjct: 61  IAFVEKSKEYDLAKAEILNIINLRPITPVELFPIIENCDVRMGEEATERMEEMGSMVEHV 120

Query: 121 FPTPQNEPTFEVTPKEGNEAEAMEVQEGAGDADEEPMQTT 161
           FPTPQ +PTFE TP EGNEAE ME QEGAGDA EEP+QTT
Sbjct: 121 FPTPQIQPTFEATPNEGNEAETMEEQEGAGDAVEEPIQTT 160

[Close]

BLAST of CsaV3_2G013430 vs. NCBI nr
Match: XP_038875324.1 (uncharacterized protein LOC120067805 [Benincasa hispida])

HSP 1 Score: 250.0 bits (637), Expect = 1.4e-62
Identity = 125/162 (77.16%), Postives = 139/162 (85.80%), Query Frame = 0


Query: 1   MKILEANAGPLTNFEVLDFLRSKGAAKDPTRVLAKVLPSEYKVFDYLNQTSACNQTREAI 60
           MKILEANAGPLTNFEVLDFLRSKGAAKDPTRVLAKV PSEYKV+DYLNQT ACNQ+REAI
Sbjct: 1   MKILEANAGPLTNFEVLDFLRSKGAAKDPTRVLAKVAPSEYKVYDYLNQTPACNQSREAI 60

Query: 61  INFAEKSKEYDLAKAEILNIINLRPTTPVELFPVIENCDARMGEGATE--RMEEIGLMVE 120
           + F E+SKEYDLAKAEILNIIN RP  PVELFP+IE+C+ARMG+   +  RM+E+  MVE
Sbjct: 61  LEFVERSKEYDLAKAEILNIINCRPIAPVELFPIIESCEARMGDDGVDGGRMQELVTMVE 120

Query: 121 HVFPTPQNEPTFEVTPKEGNEAEAMEVQEGAGDADEEPMQTT 161
            VFPTPQNEPT EV PKEG EAE ME QE AGD ++EPM+ T
Sbjct: 121 QVFPTPQNEPTSEVAPKEGKEAETMEEQEVAGDVNDEPMEKT 162

[Close]

BLAST of CsaV3_2G013430 vs. NCBI nr
Match: XP_023548749.1 (uncharacterized protein LOC111807313 [Cucurbita pepo subsp. pepo] >KAG6574960.1 DNA-directed RNA polymerase III subunit RPC9, partial [Cucurbita argyrosperma subsp. sororia] >KAG7013528.1 DNA-directed RNA polymerase III subunit RPC9 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 230.3 bits (586), Expect = 1.1e-56
Identity = 117/160 (73.12%), Postives = 130/160 (81.25%), Query Frame = 0


Query: 1   MKILEANAGPLTNFEVLDFLRSKGAAKDPTRVLAKVLPSEYKVFDYLNQTSACNQTREAI 60
           MKILEANAG LTNFEVLDFLRSKGAAKDPTRVLAKV PSEYKV+DYLNQT ACNQTREAI
Sbjct: 1   MKILEANAGALTNFEVLDFLRSKGAAKDPTRVLAKVAPSEYKVYDYLNQTHACNQTREAI 60

Query: 61  INFAEKSKEYDLAKAEILNIINLRPTTPVELFPVIENCDARMGEGATERMEEIGLMVEHV 120
           I F +KSK+YDLAKAE+LNI+NLRP TPVE+FP+IE+ D RMG+   + + E   MVE V
Sbjct: 61  IEFVDKSKKYDLAKAELLNILNLRPITPVEIFPIIEDSDVRMGDDGIQELTE---MVEQV 120

Query: 121 FPTPQNEPTFEVTPKEGNEAEAMEVQEGAGDADEEPMQTT 161
           FPTPQ EPT E  P EG EAE M  QE   DA +EPM+TT
Sbjct: 121 FPTPQTEPTSEAAPMEGKEAETMAEQEEIVDAGQEPMETT 157

[Close]

BLAST of CsaV3_2G013430 vs. NCBI nr
Match: XP_022958741.1 (uncharacterized protein LOC111459926 [Cucurbita moschata])

HSP 1 Score: 230.3 bits (586), Expect = 1.1e-56
Identity = 117/160 (73.12%), Postives = 130/160 (81.25%), Query Frame = 0


Query: 1   MKILEANAGPLTNFEVLDFLRSKGAAKDPTRVLAKVLPSEYKVFDYLNQTSACNQTREAI 60
           MKILEANAG LTNFEVLDFLRSKGAAKDPTRVLAKV PSEYKV+DYLNQT ACNQTREAI
Sbjct: 1   MKILEANAGALTNFEVLDFLRSKGAAKDPTRVLAKVAPSEYKVYDYLNQTHACNQTREAI 60

Query: 61  INFAEKSKEYDLAKAEILNIINLRPTTPVELFPVIENCDARMGEGATERMEEIGLMVEHV 120
           I F +KSK+YDLAKAE+LNI+NLRP TPVE+FP+IE+ D RMG+   + + E   MVE V
Sbjct: 61  IEFVDKSKKYDLAKAELLNILNLRPITPVEIFPIIEDSDVRMGDDGIQELTE---MVEQV 120

Query: 121 FPTPQNEPTFEVTPKEGNEAEAMEVQEGAGDADEEPMQTT 161
           FPTPQ EPT E  P EG EAE M  QE   DA +EPM+TT
Sbjct: 121 FPTPQTEPTSEAVPMEGKEAETMAEQEEIVDAGQEPMETT 157

[Close]

BLAST of CsaV3_2G013430 vs. ExPASy Swiss-Prot
Match: Q60482 (DNA-directed RNA polymerase III subunit RPC9 OS=Cavia porcellus OX=10141 GN=CRCP PE=2 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 1.7e-07
Identity = 49/157 (31.21%), Postives = 75/157 (47.77%), Query Frame = 0


Query: 1   MKILEANAGPLTNFEVLDFLRSKGAAKDPTRVLAKVLPS---------EYKVFDYLNQTS 60
           M++ +AN+  L+N+EV   L      KD  R   K+  S          Y+   YL++T 
Sbjct: 1   MEVKDANSALLSNYEVFQLLTD---LKDQRRESGKMKHSAGQQNLNTITYETLKYLSKTP 60

Query: 61  ACNQTREAIINFAEKSKEYDLAKAEILNIINLRPTTPVELFPVIENCDARMGEGATERME 120
             +Q+ E +  F    K + L KAE L ++N RP T VE+  ++E  + R  E   E++E
Sbjct: 61  CRHQSPEIVREFLTAMKSHKLTKAEKLQLLNHRPMTAVEIQLMVEETEERFTE--EEQIE 120

Query: 121 EIGLMVEHVFPTPQNEPTFEVTPKEGNEAEAMEVQEG 149
            +   V H+ P    EP  E    +    EAME +EG
Sbjct: 121 ALLHTVTHILPA---EPEVE----QMASTEAME-EEG 144

[Close]

BLAST of CsaV3_2G013430 vs. ExPASy Swiss-Prot
Match: Q8VHM6 (DNA-directed RNA polymerase III subunit RPC9 OS=Rattus norvegicus OX=10116 GN=Crcp PE=2 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 5.1e-07
Identity = 44/155 (28.39%), Postives = 73/155 (47.10%), Query Frame = 0


Query: 1   MKILEANAGPLTNFEVLDFL------RSKGAAKDPTRVLAKVLPSEYKVFDYLNQTSACN 60
           M++ +ANA  L+N+EV   L      R +      +     +    Y+   Y+++T   N
Sbjct: 1   MEVKDANAALLSNYEVFQLLTDLKEQRKESGKNKHSAGQQNLNAITYETLKYISKTPCKN 60

Query: 61  QTREAIINFAEKSKEYDLAKAEILNIINLRPTTPVELFPVIENCDARMGEGATERMEEIG 120
           Q+   +  F    K + L KAE L ++N RP T VE+  ++E  + R+ E   E++E + 
Sbjct: 61  QSPAIVQEFLTAMKSHKLTKAEKLQLLNHRPMTAVEIQLMVEESEERLTE---EQIEALL 120

Query: 121 LMVEHVFPTPQNEPTFEVTPKEGNEAEAMEVQEGA 150
             V  + P     P  E +    N+A AME +E A
Sbjct: 121 HTVTSILPA---GPEDEQSKSTSNDA-AMEEEEPA 148

[Close]

BLAST of CsaV3_2G013430 vs. ExPASy Swiss-Prot
Match: O35427 (DNA-directed RNA polymerase III subunit RPC9 OS=Mus musculus OX=10090 GN=Crcp PE=2 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 1.1e-06
Identity = 43/156 (27.56%), Postives = 74/156 (47.44%), Query Frame = 0


Query: 1   MKILEANAGPLTNFEVLDFL------RSKGAAKDPTRVLAKVLPSEYKVFDYLNQTSACN 60
           M++ +ANA  L+N+EV   L      R +      +     +    Y+   Y+++T   N
Sbjct: 1   MEVKDANAALLSNYEVFQLLTDLKEQRKESGKNKHSAGQQNLNAITYETLKYISKTPCRN 60

Query: 61  QTREAIINFAEKSKEYDLAKAEILNIINLRPTTPVELFPVIENCDARMGEGATERMEEIG 120
           Q+   +  F    K + L KAE L ++N RP T VE+  ++E  + R+ E   E++E + 
Sbjct: 61  QSPAIVQEFLTAMKSHKLTKAEKLQLLNHRPMTAVEIQLMVEESEERLTE---EQIEALL 120

Query: 121 LMVEHVFPT-PQNEPTFEVTPKEGNEAEAMEVQEGA 150
             V  + P  P++E +     K  +   AME +E A
Sbjct: 121 HTVTSILPAGPEDEQS-----KSTSNDVAMEEEEPA 148

[Close]

BLAST of CsaV3_2G013430 vs. ExPASy Swiss-Prot
Match: A0JN61 (DNA-directed RNA polymerase III subunit RPC9 OS=Bos taurus OX=9913 GN=CRCP PE=2 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 1.5e-06
Identity = 35/128 (27.34%), Postives = 62/128 (48.44%), Query Frame = 0


Query: 1   MKILEANAGPLTNFEVLDFL------RSKGAAKDPTRVLAKVLPSEYKVFDYLNQTSACN 60
           M++ +ANA  L+N+EV   L      R +      +     +    Y+   Y+++T   +
Sbjct: 1   MEVKDANAALLSNYEVFQLLTDLKEQRKESGKNKHSSGQQNLNTITYETLKYISKTPCKH 60

Query: 61  QTREAIINFAEKSKEYDLAKAEILNIINLRPTTPVELFPVIENCDARMGEGATERMEEIG 120
           Q+ E +  F    K + L KAE L ++N RP T VE+  ++E  + R+ E   E++E + 
Sbjct: 61  QSPEIVREFLTAMKSHKLTKAEKLQLLNHRPVTAVEIQLMVEESEERLTE---EQIEALL 120

Query: 121 LMVEHVFP 123
             V  + P
Sbjct: 121 HTVTSILP 125

[Close]

BLAST of CsaV3_2G013430 vs. ExPASy Swiss-Prot
Match: O75575 (DNA-directed RNA polymerase III subunit RPC9 OS=Homo sapiens OX=9606 GN=CRCP PE=1 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 3.3e-06
Identity = 42/155 (27.10%), Postives = 73/155 (47.10%), Query Frame = 0


Query: 1   MKILEANAGPLTNFEVLDFL------RSKGAAKDPTRVLAKVLPSEYKVFDYLNQTSACN 60
           M++ +AN+  L+N+EV   L      R +      +     +    Y+   Y+++T   +
Sbjct: 1   MEVKDANSALLSNYEVFQLLTDLKEQRKESGKNKHSSGQQNLNTITYETLKYISKTPCRH 60

Query: 61  QTREAIINFAEKSKEYDLAKAEILNIINLRPTTPVELFPVIENCDARMGEGATERMEEIG 120
           Q+ E +  F    K + L KAE L ++N RP T VE+  ++E  + R+ E   E++E + 
Sbjct: 61  QSPEIVREFLTALKSHKLTKAEKLQLLNHRPVTAVEIQLMVEESEERLTE---EQIEALL 120

Query: 121 LMVEHVFPTPQNEPTFEVTPKEGNEAEAMEVQEGA 150
             V  + P    EP  E   K  N   AM+ ++ A
Sbjct: 121 HTVTSILPA---EPEAE-QKKNTNSNVAMDEEDPA 148

[Close]

BLAST of CsaV3_2G013430 vs. ExPASy TrEMBL
Match: A0A0A0LIC1 (DNA-directed RNA polymerase III subunit RPC9 OS=Cucumis sativus OX=3659 GN=Csa_2G222080 PE=3 SV=1)

HSP 1 Score: 318.9 bits (816), Expect = 1.2e-83
Identity = 160/160 (100.00%), Postives = 160/160 (100.00%), Query Frame = 0


Query: 1   MKILEANAGPLTNFEVLDFLRSKGAAKDPTRVLAKVLPSEYKVFDYLNQTSACNQTREAI 60
           MKILEANAGPLTNFEVLDFLRSKGAAKDPTRVLAKVLPSEYKVFDYLNQTSACNQTREAI
Sbjct: 1   MKILEANAGPLTNFEVLDFLRSKGAAKDPTRVLAKVLPSEYKVFDYLNQTSACNQTREAI 60

Query: 61  INFAEKSKEYDLAKAEILNIINLRPTTPVELFPVIENCDARMGEGATERMEEIGLMVEHV 120
           INFAEKSKEYDLAKAEILNIINLRPTTPVELFPVIENCDARMGEGATERMEEIGLMVEHV
Sbjct: 61  INFAEKSKEYDLAKAEILNIINLRPTTPVELFPVIENCDARMGEGATERMEEIGLMVEHV 120

Query: 121 FPTPQNEPTFEVTPKEGNEAEAMEVQEGAGDADEEPMQTT 161
           FPTPQNEPTFEVTPKEGNEAEAMEVQEGAGDADEEPMQTT
Sbjct: 121 FPTPQNEPTFEVTPKEGNEAEAMEVQEGAGDADEEPMQTT 160

[Close]

BLAST of CsaV3_2G013430 vs. ExPASy TrEMBL
Match: A0A5A7UV88 (DNA-directed RNA polymerase III subunit RPC9 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold216G001320 PE=3 SV=1)

HSP 1 Score: 284.3 bits (726), Expect = 3.2e-73
Identity = 142/160 (88.75%), Postives = 147/160 (91.88%), Query Frame = 0


Query: 1   MKILEANAGPLTNFEVLDFLRSKGAAKDPTRVLAKVLPSEYKVFDYLNQTSACNQTREAI 60
           MKILEANAGPLTNFEVLDFLRSKGAAKDPTRVLAKVLPSEYKVFDYLNQT ACNQTREA+
Sbjct: 1   MKILEANAGPLTNFEVLDFLRSKGAAKDPTRVLAKVLPSEYKVFDYLNQTPACNQTREAV 60

Query: 61  INFAEKSKEYDLAKAEILNIINLRPTTPVELFPVIENCDARMGEGATERMEEIGLMVEHV 120
           I F EKSKEYDLAKAEILNIINLRP TPVELFP+IENCD RMGE ATERMEE+G MVEHV
Sbjct: 61  IAFVEKSKEYDLAKAEILNIINLRPITPVELFPIIENCDVRMGEEATERMEEMGSMVEHV 120

Query: 121 FPTPQNEPTFEVTPKEGNEAEAMEVQEGAGDADEEPMQTT 161
           FPTPQ +PTFE TP EGNEAE ME QEGAGDA EEP+QTT
Sbjct: 121 FPTPQIQPTFEATPNEGNEAETMEEQEGAGDAVEEPIQTT 160

[Close]

BLAST of CsaV3_2G013430 vs. ExPASy TrEMBL
Match: A0A1S3BLS4 (DNA-directed RNA polymerase III subunit RPC9 OS=Cucumis melo OX=3656 GN=LOC103491231 PE=3 SV=1)

HSP 1 Score: 284.3 bits (726), Expect = 3.2e-73
Identity = 142/160 (88.75%), Postives = 147/160 (91.88%), Query Frame = 0


Query: 1   MKILEANAGPLTNFEVLDFLRSKGAAKDPTRVLAKVLPSEYKVFDYLNQTSACNQTREAI 60
           MKILEANAGPLTNFEVLDFLRSKGAAKDPTRVLAKVLPSEYKVFDYLNQT ACNQTREA+
Sbjct: 1   MKILEANAGPLTNFEVLDFLRSKGAAKDPTRVLAKVLPSEYKVFDYLNQTPACNQTREAV 60

Query: 61  INFAEKSKEYDLAKAEILNIINLRPTTPVELFPVIENCDARMGEGATERMEEIGLMVEHV 120
           I F EKSKEYDLAKAEILNIINLRP TPVELFP+IENCD RMGE ATERMEE+G MVEHV
Sbjct: 61  IAFVEKSKEYDLAKAEILNIINLRPITPVELFPIIENCDVRMGEEATERMEEMGSMVEHV 120

Query: 121 FPTPQNEPTFEVTPKEGNEAEAMEVQEGAGDADEEPMQTT 161
           FPTPQ +PTFE TP EGNEAE ME QEGAGDA EEP+QTT
Sbjct: 121 FPTPQIQPTFEATPNEGNEAETMEEQEGAGDAVEEPIQTT 160

[Close]

BLAST of CsaV3_2G013430 vs. ExPASy TrEMBL
Match: A0A6J1H2X6 (DNA-directed RNA polymerase III subunit RPC9 OS=Cucurbita moschata OX=3662 GN=LOC111459926 PE=3 SV=1)

HSP 1 Score: 230.3 bits (586), Expect = 5.6e-57
Identity = 117/160 (73.12%), Postives = 130/160 (81.25%), Query Frame = 0


Query: 1   MKILEANAGPLTNFEVLDFLRSKGAAKDPTRVLAKVLPSEYKVFDYLNQTSACNQTREAI 60
           MKILEANAG LTNFEVLDFLRSKGAAKDPTRVLAKV PSEYKV+DYLNQT ACNQTREAI
Sbjct: 1   MKILEANAGALTNFEVLDFLRSKGAAKDPTRVLAKVAPSEYKVYDYLNQTHACNQTREAI 60

Query: 61  INFAEKSKEYDLAKAEILNIINLRPTTPVELFPVIENCDARMGEGATERMEEIGLMVEHV 120
           I F +KSK+YDLAKAE+LNI+NLRP TPVE+FP+IE+ D RMG+   + + E   MVE V
Sbjct: 61  IEFVDKSKKYDLAKAELLNILNLRPITPVEIFPIIEDSDVRMGDDGIQELTE---MVEQV 120

Query: 121 FPTPQNEPTFEVTPKEGNEAEAMEVQEGAGDADEEPMQTT 161
           FPTPQ EPT E  P EG EAE M  QE   DA +EPM+TT
Sbjct: 121 FPTPQTEPTSEAVPMEGKEAETMAEQEEIVDAGQEPMETT 157

[Close]

BLAST of CsaV3_2G013430 vs. ExPASy TrEMBL
Match: A0A6J1L324 (DNA-directed RNA polymerase III subunit RPC9 OS=Cucurbita maxima OX=3661 GN=LOC111499396 PE=3 SV=1)

HSP 1 Score: 229.2 bits (583), Expect = 1.2e-56
Identity = 117/160 (73.12%), Postives = 130/160 (81.25%), Query Frame = 0


Query: 1   MKILEANAGPLTNFEVLDFLRSKGAAKDPTRVLAKVLPSEYKVFDYLNQTSACNQTREAI 60
           MKILEANAG LTNFEVLDFLRSKGAAKDPTRVLAKV PSEYKV+DYLNQT ACNQTREAI
Sbjct: 1   MKILEANAGALTNFEVLDFLRSKGAAKDPTRVLAKVAPSEYKVYDYLNQTHACNQTREAI 60

Query: 61  INFAEKSKEYDLAKAEILNIINLRPTTPVELFPVIENCDARMGEGATERMEEIGLMVEHV 120
           I F +KSK+YDLAKAE+LNI+NLRP TPVE+FP+IE+ D RMG+   + + E   MVE V
Sbjct: 61  IEFVDKSKKYDLAKAELLNILNLRPITPVEIFPIIEDSDVRMGDDGIQELTE---MVEQV 120

Query: 121 FPTPQNEPTFEVTPKEGNEAEAMEVQEGAGDADEEPMQTT 161
           FPTPQ EPT EV P EG EAE M  Q    DA +EPM+TT
Sbjct: 121 FPTPQTEPTSEVAPMEGKEAETMAEQVEIVDAGQEPMETT 157

[Close]

BLAST of CsaV3_2G013430 vs. TAIR 10
Match: AT5G62950.1 (RNA polymerase II, Rpb4, core protein )

HSP 1 Score: 137.5 bits (345), Expect = 9.4e-33
Identity = 68/101 (67.33%), Postives = 84/101 (83.17%), Query Frame = 0


Query: 1   MKILEANAGPLTNFEVLDFLRSKGAAKDPTRVLAKVLPSEYKVFDYLNQTSACNQTREAI 60
           MKI++ANAG LTNFEVLDFL S+GA+KD TRV+A +  SEYKV+DYL +T+A  QTRE+I
Sbjct: 1   MKIVKANAGALTNFEVLDFLNSRGASKDTTRVIAPIARSEYKVYDYLVETAASTQTRESI 60

Query: 61  INFAEKSKEYDLAKAEILNIINLRPTTPVELFPVIENCDAR 102
             FA+K K++ LAKAEILNIINLRP++ VEL P+IEN D R
Sbjct: 61  NKFADKCKDFKLAKAEILNIINLRPSSIVELLPIIENLDDR 101

[Close]

BLAST of CsaV3_2G013430 vs. TAIR 10
Match: AT5G62950.3 (RNA polymerase II, Rpb4, core protein )

HSP 1 Score: 137.5 bits (345), Expect = 9.4e-33
Identity = 68/101 (67.33%), Postives = 84/101 (83.17%), Query Frame = 0


Query: 1   MKILEANAGPLTNFEVLDFLRSKGAAKDPTRVLAKVLPSEYKVFDYLNQTSACNQTREAI 60
           MKI++ANAG LTNFEVLDFL S+GA+KD TRV+A +  SEYKV+DYL +T+A  QTRE+I
Sbjct: 1   MKIVKANAGALTNFEVLDFLNSRGASKDTTRVIAPIARSEYKVYDYLVETAASTQTRESI 60

Query: 61  INFAEKSKEYDLAKAEILNIINLRPTTPVELFPVIENCDAR 102
             FA+K K++ LAKAEILNIINLRP++ VEL P+IEN D R
Sbjct: 61  NKFADKCKDFKLAKAEILNIINLRPSSIVELLPIIENLDDR 101

[Close]

BLAST of CsaV3_2G013430 vs. TAIR 10
Match: AT5G62950.2 (RNA polymerase II, Rpb4, core protein )

HSP 1 Score: 127.1 bits (318), Expect = 1.3e-29
Identity = 63/93 (67.74%), Postives = 78/93 (83.87%), Query Frame = 0


Query: 1  MKILEANAGPLTNFEVLDFLRSKGAAKDPTRVLAKVLPSEYKVFDYLNQTSACNQTREAI 60
          MKI++ANAG LTNFEVLDFL S+GA+KD TRV+A +  SEYKV+DYL +T+A  QTRE+I
Sbjct: 1  MKIVKANAGALTNFEVLDFLNSRGASKDTTRVIAPIARSEYKVYDYLVETAASTQTRESI 60

Query: 61 INFAEKSKEYDLAKAEILNIINLRPTTPVELFP 94
            FA+K K++ LAKAEILNIINLRP++ VEL P
Sbjct: 61 NKFADKCKDFKLAKAEILNIINLRPSSIVELLP 93

[Close]

BLAST of CsaV3_2G013430 vs. TAIR 10
Match: AT3G28956.1 (RNA polymerase II, Rpb4, core protein )

HSP 1 Score: 125.9 bits (315), Expect = 2.8e-29
Identity = 74/141 (52.48%), Postives = 100/141 (70.92%), Query Frame = 0


Query: 4   LEANAGPLTNFEVLDFLRSKGAAKDPTRVLAKVLPSEYKVFDYLNQTSACNQTREAIINF 63
           ++ANAG LTNFE+LDFL S+GA+KD TRV+A +  SEYKV+DYL +T+A  QTRE++   
Sbjct: 1   MKANAGALTNFELLDFLNSRGASKDTTRVIAPIARSEYKVYDYLVETAASTQTRESVNKS 60

Query: 64  AEKSKEYDLAKAEILNIINLRPTTPVELFPVIENCDARMGEGATERMEEIGLMVEHVFPT 123
           A+K K++ LAKAEILNIINL P++ VEL P+IEN D R  E  T+ + E   +V+ + P 
Sbjct: 61  ADKCKDFKLAKAEILNIINLWPSSIVELLPIIENLDDR--EIDTDGILE---LVKDLLPP 120

Query: 124 PQNEPTFEVTPKEGNEAEAME 145
               PT E +PK+ +E E  E
Sbjct: 121 ---LPTAE-SPKDNDEEEETE 132

The following BLAST results are available for this feature:

BLAST of CsaV3_2G013430 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004145392.1	2.5e-83	100.00	DNA-directed RNA polymerase III subunit rpc9 [Cucumis sativus] >XP_031736825.1 D...	[more]
XP_008449317.1	6.7e-73	88.75	PREDICTED: DNA-directed RNA polymerase III subunit RPC9-like [Cucumis melo] >KAA...	[more]
XP_038875324.1	1.4e-62	77.16	uncharacterized protein LOC120067805 [Benincasa hispida]	[more]
XP_023548749.1	1.1e-56	73.13	uncharacterized protein LOC111807313 [Cucurbita pepo subsp. pepo] >KAG6574960.1 ...	[more]
XP_022958741.1	1.1e-56	73.13	uncharacterized protein LOC111459926 [Cucurbita moschata]	[more]

BLAST of CsaV3_2G013430 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q60482	1.7e-07	31.21	DNA-directed RNA polymerase III subunit RPC9 OS=Cavia porcellus OX=10141 GN=CRCP...	[more]
Q8VHM6	5.1e-07	28.39	DNA-directed RNA polymerase III subunit RPC9 OS=Rattus norvegicus OX=10116 GN=Cr...	[more]
O35427	1.1e-06	27.56	DNA-directed RNA polymerase III subunit RPC9 OS=Mus musculus OX=10090 GN=Crcp PE...	[more]
A0JN61	1.5e-06	27.34	DNA-directed RNA polymerase III subunit RPC9 OS=Bos taurus OX=9913 GN=CRCP PE=2 ...	[more]
O75575	3.3e-06	27.10	DNA-directed RNA polymerase III subunit RPC9 OS=Homo sapiens OX=9606 GN=CRCP PE=...	[more]

BLAST of CsaV3_2G013430 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LIC1	1.2e-83	100.00	DNA-directed RNA polymerase III subunit RPC9 OS=Cucumis sativus OX=3659 GN=Csa_2...	[more]
A0A5A7UV88	3.2e-73	88.75	DNA-directed RNA polymerase III subunit RPC9 OS=Cucumis melo var. makuwa OX=1194...	[more]
A0A1S3BLS4	3.2e-73	88.75	DNA-directed RNA polymerase III subunit RPC9 OS=Cucumis melo OX=3656 GN=LOC10349...	[more]
A0A6J1H2X6	5.6e-57	73.13	DNA-directed RNA polymerase III subunit RPC9 OS=Cucurbita moschata OX=3662 GN=LO...	[more]
A0A6J1L324	1.2e-56	73.13	DNA-directed RNA polymerase III subunit RPC9 OS=Cucurbita maxima OX=3661 GN=LOC1...	[more]

BLAST of CsaV3_2G013430 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G62950.1	9.4e-33	67.33	RNA polymerase II, Rpb4, core protein	[more]
AT5G62950.3	9.4e-33	67.33	RNA polymerase II, Rpb4, core protein	[more]
AT5G62950.2	1.3e-29	67.74	RNA polymerase II, Rpb4, core protein	[more]
AT3G28956.1	2.8e-29	52.48	RNA polymerase II, Rpb4, core protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006590	RNA polymerase Rpb4/RPC9, core	SMART	SM00657	rpol4neu2	coord: 1..124 e-value: 3.1E-17 score: 73.3
IPR038324	Rpb4/RPC9 superfamily	GENE3D	1.20.1250.40		coord: 1..122 e-value: 3.3E-27 score: 96.9
IPR005574	RNA polymerase subunit RPB4/RPC9	PFAM	PF03874	RNA_pol_Rpb4	coord: 11..110 e-value: 6.6E-16 score: 58.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 124..160
IPR038846	DNA-directed RNA polymerase III subunit RPC9	PANTHER	PTHR15561	CALCITONIN GENE-RELATED PEPTIDE-RECEPTOR COMPONENT PROTEIN	coord: 1..141
IPR010997	HRDC-like superfamily	SUPERFAMILY	47819	HRDC-like	coord: 4..107

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_2G013430.1	CsaV3_2G013430.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0044237	cellular metabolic process
biological_process	GO:0006352	DNA-templated transcription, initiation
biological_process	GO:0006384	transcription initiation from RNA polymerase III promoter
cellular_component	GO:0030880	RNA polymerase complex
cellular_component	GO:0005666	RNA polymerase III complex
molecular_function	GO:0000166	nucleotide binding