CsaV3_2G013150 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_2G013150
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionEnvelope-like protein
Locationchr2: 10717497 .. 10717937 (+)
RNA-Seq ExpressionCsaV3_2G013150
SyntenyCsaV3_2G013150
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGGATATGAAAGAATTGATGGAGCACTCACTTTGTGATTTAGAAAAAATCGCAAGTGAAAATCCATTTTCCTTAATCGAGACCATCGTGGAAAGGAAAATGTCACCAAGCAACTTTCGCAAATGTTGTCTTCACAAAAATCGTTGATTTCCCCTCCTTGTCTCCAATGGTGCCCATGTGCCGGATATTGAGCACATTGTTCGTTCCTCGCGCTTAGCTCCTACTTTTGACTCTGAGTCTGTTGGTTTCTCTGTCACTGCGGTTACTTTGTCTGCTACTGCTGCTTTTCGGATCAAAAACTGTCTTATGGTGGAGTCTCGTGCTCCTGGCACATCTATTGTGTTACTCACTGATCATCATGTTGAGATAAACAATCTTCTTCGTTATTTGAAGTCTGTCTTGTCTGCTTCTGGTGATCCTGGTCTTTCTACATCTTGA

mRNA sequence

ATGAAGGATATGAAAGAATTGATGGAGCACTCACTTTGTGATTTAGAAAAAATCGCAAGTGAAAATCCATTTTCCTTAATCGAGACCATCGTGGAAAGGAAAATGTCACCAAGCAACTTTCGCAAATCTCCTACTTTTGACTCTGAGTCTGTTGGTTTCTCTGTCACTGCGGTTACTTTGTCTGCTACTGCTGCTTTTCGGATCAAAAACTGTCTTATGGTGGAGTCTCGTGCTCCTGGCACATCTATTGTGTTACTCACTGATCATCATGTTGAGATAAACAATCTTCTTCGTTATTTGAAGTCTGTCTTGTCTGCTTCTGGTGATCCTGGTCTTTCTACATCTTGA

Coding sequence (CDS)

ATGAAGGATATGAAAGAATTGATGGAGCACTCACTTTGTGATTTAGAAAAAATCGCAAGTGAAAATCCATTTTCCTTAATCGAGACCATCGTGGAAAGGAAAATGTCACCAAGCAACTTTCGCAAATCTCCTACTTTTGACTCTGAGTCTGTTGGTTTCTCTGTCACTGCGGTTACTTTGTCTGCTACTGCTGCTTTTCGGATCAAAAACTGTCTTATGGTGGAGTCTCGTGCTCCTGGCACATCTATTGTGTTACTCACTGATCATCATGTTGAGATAAACAATCTTCTTCGTTATTTGAAGTCTGTCTTGTCTGCTTCTGGTGATCCTGGTCTTTCTACATCTTGA

Protein sequence

MKDMKELMEHSLCDLEKIASENPFSLIETIVERKMSPSNFRKSPTFDSESVGFSVTAVTLSATAAFRIKNCLMVESRAPGTSIVLLTDHHVEINNLLRYLKSVLSASGDPGLSTS*
Homology
[Close]
BLAST of CsaV3_2G013150 vs. NCBI nr
Match: KGN61637.1 (hypothetical protein Csa_006223 [Cucumis sativus])

HSP 1 Score: 222.2 bits (565), Expect = 2.3e-54
Identity = 115/115 (100.00%), Postives = 115/115 (100.00%), Query Frame = 0 

Query: 1   MKDMKELMEHSLCDLEKIASENPFSLIETIVERKMSPSNFRKSPTFDSESVGFSVTAVTL 60
           MKDMKELMEHSLCDLEKIASENPFSLIETIVERKMSPSNFRKSPTFDSESVGFSVTAVTL
Sbjct: 1   MKDMKELMEHSLCDLEKIASENPFSLIETIVERKMSPSNFRKSPTFDSESVGFSVTAVTL 60

Query: 61  SATAAFRIKNCLMVESRAPGTSIVLLTDHHVEINNLLRYLKSVLSASGDPGLSTS 116
           SATAAFRIKNCLMVESRAPGTSIVLLTDHHVEINNLLRYLKSVLSASGDPGLSTS
Sbjct: 61  SATAAFRIKNCLMVESRAPGTSIVLLTDHHVEINNLLRYLKSVLSASGDPGLSTS 115

[Close]
BLAST of CsaV3_2G013150 vs. NCBI nr
Match: KAA0033955.1 (envelope-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 57.4 bits (137), Expect = 9.6e-05
Identity = 33/77 (42.86%), Postives = 47/77 (61.04%), Query Frame = 0 

Query: 31  VERKMSPSNFRKSPTFDSESVGFSVTAVTLSATAAFRIKNCLMVESRAPGTSIVLLTDHH 90
           +E  + PS  R +  FDSE V F+     L    A R+ N L  ESRA  TSI LL +  
Sbjct: 445 IEHDIRPS--RNARVFDSEDVNFATEGFNLLGELALRVINTLTAESRALSTSINLLFERR 504

Query: 91  VEINNLLRYLKSVLSAS 108
           +E++NL+R+LKS+LS++
Sbjct: 505 LEVDNLVRHLKSLLSST 519

[Close]
BLAST of CsaV3_2G013150 vs. ExPASy TrEMBL
Match: A0A0A0LLL2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G196880 PE=4 SV=1)

HSP 1 Score: 222.2 bits (565), Expect = 1.1e-54
Identity = 115/115 (100.00%), Postives = 115/115 (100.00%), Query Frame = 0 

Query: 1   MKDMKELMEHSLCDLEKIASENPFSLIETIVERKMSPSNFRKSPTFDSESVGFSVTAVTL 60
           MKDMKELMEHSLCDLEKIASENPFSLIETIVERKMSPSNFRKSPTFDSESVGFSVTAVTL
Sbjct: 1   MKDMKELMEHSLCDLEKIASENPFSLIETIVERKMSPSNFRKSPTFDSESVGFSVTAVTL 60

Query: 61  SATAAFRIKNCLMVESRAPGTSIVLLTDHHVEINNLLRYLKSVLSASGDPGLSTS 116
           SATAAFRIKNCLMVESRAPGTSIVLLTDHHVEINNLLRYLKSVLSASGDPGLSTS
Sbjct: 61  SATAAFRIKNCLMVESRAPGTSIVLLTDHHVEINNLLRYLKSVLSASGDPGLSTS 115

[Close]
BLAST of CsaV3_2G013150 vs. ExPASy TrEMBL
Match: A0A5A7SXP0 (Envelope-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold400G00150 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 4.7e-05
Identity = 33/77 (42.86%), Postives = 47/77 (61.04%), Query Frame = 0 

Query: 31  VERKMSPSNFRKSPTFDSESVGFSVTAVTLSATAAFRIKNCLMVESRAPGTSIVLLTDHH 90
           +E  + PS  R +  FDSE V F+     L    A R+ N L  ESRA  TSI LL +  
Sbjct: 445 IEHDIRPS--RNARVFDSEDVNFATEGFNLLGELALRVINTLTAESRALSTSINLLFERR 504

Query: 91  VEINNLLRYLKSVLSAS 108
           +E++NL+R+LKS+LS++
Sbjct: 505 LEVDNLVRHLKSLLSST 519

[Close]
BLAST of CsaV3_2G013150 vs. ExPASy TrEMBL
Match: A0A5A7UKA0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold314G00320 PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 8.8e-04
Identity = 32/83 (38.55%), Postives = 48/83 (57.83%), Query Frame = 0 

Query: 30  IVERKMSPSNFRKSPTFDSESVGFSVTAVTLSATAAFRIKNCLMVESRAPGTSIVLLTDH 89
           ++E  M PS  R    FD++ V  SV    +    AFRI N L  ESR   TSI LLTD 
Sbjct: 31  VIEHDMRPS--RNPRIFDTDDVDKSVKGFFVHLDLAFRIINTLTAESRTLSTSINLLTDK 90

Query: 90  HVEINNLLRYLKSVLSASGDPGL 113
            +E+++L+++LK+++ +S    L
Sbjct: 91  KLEVDSLIQHLKTLILSSSTGAL 111

The following BLAST results are available for this feature:
BLAST of CsaV3_2G013150 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN61637.12.3e-54100.00hypothetical protein Csa_006223 [Cucumis sativus][more]
KAA0033955.19.6e-0542.86envelope-like protein [Cucumis melo var. makuwa][more]
BLAST of CsaV3_2G013150 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_2G013150 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LLL21.1e-54100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G196880 PE=4 SV=1[more]
A0A5A7SXP04.7e-0542.86Envelope-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold40... [more]
A0A5A7UKA08.8e-0438.55Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
BLAST of CsaV3_2G013150 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_2G013150.1CsaV3_2G013150.1mRNA