CsaV3_2G012380 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_2G012380
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Glutamyl-tRNA(Gln) amidotransferase subunit B, chloroplastic/mitochondrial
Location	chr2: 9945600 .. 9946244 (+)
RNA-Seq Expression	CsaV3_2G012380
Synteny	CsaV3_2G012380

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCATTTGTAGGATTGAGATGCATTCGAACTCTACCATTGTTGTTTCACCCTGCTGCTTTGTTTTCAAGAAGGAAGAAAGTTTTGTATTTCTCTGTGAAAGCCTCACAGTCCCAAACAGCTACTCAAGAAAAGCAAAGACCTATGGCCATTTCACCACATTTTGATAAACAGATTATTGATAAAATATCTAAGGATTATGAAGCAGTTATTGGTATTGAAACCCATGTCCAGCTCTCCACTCTCACCAAAGCCTTCTGTAGCTGCCCTTACAATTATGGTTCTTCACCAAACACTAATATCTGCCCTATTTGCATGGGGCTTCCTGGTGCCTTACCTGTTTTGAACTCAAAAGTGATTGAGTCTGCAGTGAAGTTGGGCCTTGCACTAAACTGCAGTTTATCTTTCAACTCAAAATTTGATAGGAAACAATACTTTTACCCTGACCTTCCTAAGGGATATCAAATATCTCAGTTTGATGTCCCAATTGCAAGTGGTGGTTACATTGATCTCGATCTTCCTATTGAGTATGGTGGGGGGCATAGGCGATTCGGTATCACCAGGGTTCACATGGAAGAGGATGCCGGGAAGCTGCTTCACTCTGAAAGTGGAAGCTACTCTCAGGAAATGACTTTGTATCCCTAA

mRNA sequence

ATGGCATTTGTAGGATTGAGATGCATTCGAACTCTACCATTGTTGTTTCACCCTGCTGCTTTGTTTTCAAGAAGGAAGAAAGTTTTGTATTTCTCTGTGAAAGCCTCACAGTCCCAAACAGCTACTCAAGAAAAGCAAAGACCTATGGCCATTTCACCACATTTTGATAAACAGATTATTGATAAAATATCTAAGGATTATGAAGCAGTTATTGGTATTGAAACCCATGTCCAGCTCTCCACTCTCACCAAAGCCTTCTGTAGCTGCCCTTACAATTATGGTTCTTCACCAAACACTAATATCTGCCCTATTTGCATGGGGCTTCCTGGTGCCTTACCTGTTTTGAACTCAAAAGTGATTGAGTCTGCAGTGAAGTTGGGCCTTGCACTAAACTGCAGTTTATCTTTCAACTCAAAATTTGATAGGAAACAATACTTTTACCCTGACCTTCCTAAGGGATATCAAATATCTCAGTTTGATGTCCCAATTGCAAGTGGTGGTTACATTGATCTCGATCTTCCTATTGAGTATGGTGGGGGGCATAGGCGATTCGGTATCACCAGGGTTCACATGGAAGAGGATGCCGGGAAGCTGCTTCACTCTGAAAGTGGAAGCTACTCTCAGGAAATGACTTTGTATCCCTAA

Coding sequence (CDS)

ATGGCATTTGTAGGATTGAGATGCATTCGAACTCTACCATTGTTGTTTCACCCTGCTGCTTTGTTTTCAAGAAGGAAGAAAGTTTTGTATTTCTCTGTGAAAGCCTCACAGTCCCAAACAGCTACTCAAGAAAAGCAAAGACCTATGGCCATTTCACCACATTTTGATAAACAGATTATTGATAAAATATCTAAGGATTATGAAGCAGTTATTGGTATTGAAACCCATGTCCAGCTCTCCACTCTCACCAAAGCCTTCTGTAGCTGCCCTTACAATTATGGTTCTTCACCAAACACTAATATCTGCCCTATTTGCATGGGGCTTCCTGGTGCCTTACCTGTTTTGAACTCAAAAGTGATTGAGTCTGCAGTGAAGTTGGGCCTTGCACTAAACTGCAGTTTATCTTTCAACTCAAAATTTGATAGGAAACAATACTTTTACCCTGACCTTCCTAAGGGATATCAAATATCTCAGTTTGATGTCCCAATTGCAAGTGGTGGTTACATTGATCTCGATCTTCCTATTGAGTATGGTGGGGGGCATAGGCGATTCGGTATCACCAGGGTTCACATGGAAGAGGATGCCGGGAAGCTGCTTCACTCTGAAAGTGGAAGCTACTCTCAGGAAATGACTTTGTATCCCTAA

Protein sequence

MAFVGLRCIRTLPLLFHPAALFSRRKKVLYFSVKASQSQTATQEKQRPMAISPHFDKQIIDKISKDYEAVIGIETHVQLSTLTKAFCSCPYNYGSSPNTNICPICMGLPGALPVLNSKVIESAVKLGLALNCSLSFNSKFDRKQYFYPDLPKGYQISQFDVPIASGGYIDLDLPIEYGGGHRRFGITRVHMEEDAGKLLHSESGSYSQEMTLYP*

Homology

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BLAST of CsaV3_2G012380 vs. NCBI nr
Match: KAE8651796.1 (hypothetical protein Csa_005907 [Cucumis sativus])

HSP 1 Score: 436.4 bits (1121), Expect = 1.4e-118
Identity = 214/214 (100.00%), Postives = 214/214 (100.00%), Query Frame = 0


Query: 1   MAFVGLRCIRTLPLLFHPAALFSRRKKVLYFSVKASQSQTATQEKQRPMAISPHFDKQII 60
           MAFVGLRCIRTLPLLFHPAALFSRRKKVLYFSVKASQSQTATQEKQRPMAISPHFDKQII
Sbjct: 1   MAFVGLRCIRTLPLLFHPAALFSRRKKVLYFSVKASQSQTATQEKQRPMAISPHFDKQII 60

Query: 61  DKISKDYEAVIGIETHVQLSTLTKAFCSCPYNYGSSPNTNICPICMGLPGALPVLNSKVI 120
           DKISKDYEAVIGIETHVQLSTLTKAFCSCPYNYGSSPNTNICPICMGLPGALPVLNSKVI
Sbjct: 61  DKISKDYEAVIGIETHVQLSTLTKAFCSCPYNYGSSPNTNICPICMGLPGALPVLNSKVI 120

Query: 121 ESAVKLGLALNCSLSFNSKFDRKQYFYPDLPKGYQISQFDVPIASGGYIDLDLPIEYGGG 180
           ESAVKLGLALNCSLSFNSKFDRKQYFYPDLPKGYQISQFDVPIASGGYIDLDLPIEYGGG
Sbjct: 121 ESAVKLGLALNCSLSFNSKFDRKQYFYPDLPKGYQISQFDVPIASGGYIDLDLPIEYGGG 180

Query: 181 HRRFGITRVHMEEDAGKLLHSESGSYSQEMTLYP 215
           HRRFGITRVHMEEDAGKLLHSESGSYSQEMTLYP
Sbjct: 181 HRRFGITRVHMEEDAGKLLHSESGSYSQEMTLYP 214

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BLAST of CsaV3_2G012380 vs. NCBI nr
Match: XP_011649124.1 (glutamyl-tRNA(Gln) amidotransferase subunit B, chloroplastic/mitochondrial [Cucumis sativus] >XP_031737141.1 glutamyl-tRNA(Gln) amidotransferase subunit B, chloroplastic/mitochondrial [Cucumis sativus])

HSP 1 Score: 422.9 bits (1086), Expect = 1.6e-114
Identity = 208/208 (100.00%), Postives = 208/208 (100.00%), Query Frame = 0


Query: 1   MAFVGLRCIRTLPLLFHPAALFSRRKKVLYFSVKASQSQTATQEKQRPMAISPHFDKQII 60
           MAFVGLRCIRTLPLLFHPAALFSRRKKVLYFSVKASQSQTATQEKQRPMAISPHFDKQII
Sbjct: 1   MAFVGLRCIRTLPLLFHPAALFSRRKKVLYFSVKASQSQTATQEKQRPMAISPHFDKQII 60

Query: 61  DKISKDYEAVIGIETHVQLSTLTKAFCSCPYNYGSSPNTNICPICMGLPGALPVLNSKVI 120
           DKISKDYEAVIGIETHVQLSTLTKAFCSCPYNYGSSPNTNICPICMGLPGALPVLNSKVI
Sbjct: 61  DKISKDYEAVIGIETHVQLSTLTKAFCSCPYNYGSSPNTNICPICMGLPGALPVLNSKVI 120

Query: 121 ESAVKLGLALNCSLSFNSKFDRKQYFYPDLPKGYQISQFDVPIASGGYIDLDLPIEYGGG 180
           ESAVKLGLALNCSLSFNSKFDRKQYFYPDLPKGYQISQFDVPIASGGYIDLDLPIEYGGG
Sbjct: 121 ESAVKLGLALNCSLSFNSKFDRKQYFYPDLPKGYQISQFDVPIASGGYIDLDLPIEYGGG 180

Query: 181 HRRFGITRVHMEEDAGKLLHSESGSYSQ 209
           HRRFGITRVHMEEDAGKLLHSESGSYSQ
Sbjct: 181 HRRFGITRVHMEEDAGKLLHSESGSYSQ 208

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BLAST of CsaV3_2G012380 vs. NCBI nr
Match: XP_008460666.1 (PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit B, chloroplastic/mitochondrial [Cucumis melo] >XP_008460667.1 PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit B, chloroplastic/mitochondrial [Cucumis melo])

HSP 1 Score: 411.8 bits (1057), Expect = 3.7e-111
Identity = 199/208 (95.67%), Postives = 206/208 (99.04%), Query Frame = 0


Query: 1   MAFVGLRCIRTLPLLFHPAALFSRRKKVLYFSVKASQSQTATQEKQRPMAISPHFDKQII 60
           MAF+G+R I+TLPLLFHPA LFSRRKK++YFSVKASQSQTATQEKQRP+AISPHFDKQII
Sbjct: 1   MAFIGMRSIQTLPLLFHPAVLFSRRKKIMYFSVKASQSQTATQEKQRPIAISPHFDKQII 60

Query: 61  DKISKDYEAVIGIETHVQLSTLTKAFCSCPYNYGSSPNTNICPICMGLPGALPVLNSKVI 120
           DKISKDYEA+IGIETHVQLSTLTKAFCSCPYNYGSSPNTNICPICMGLPGALPVLNSKVI
Sbjct: 61  DKISKDYEAIIGIETHVQLSTLTKAFCSCPYNYGSSPNTNICPICMGLPGALPVLNSKVI 120

Query: 121 ESAVKLGLALNCSLSFNSKFDRKQYFYPDLPKGYQISQFDVPIASGGYIDLDLPIEYGGG 180
           ESAVKLGLALNCSLSFNSKFDRKQYFYPDLPKGYQISQFDVPIASGGYIDLDLPIEYGGG
Sbjct: 121 ESAVKLGLALNCSLSFNSKFDRKQYFYPDLPKGYQISQFDVPIASGGYIDLDLPIEYGGG 180

Query: 181 HRRFGITRVHMEEDAGKLLHSESGSYSQ 209
           HRRFGITRVHMEEDAGKLLHSESGSYSQ
Sbjct: 181 HRRFGITRVHMEEDAGKLLHSESGSYSQ 208

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BLAST of CsaV3_2G012380 vs. NCBI nr
Match: XP_038876097.1 (glutamyl-tRNA(Gln) amidotransferase subunit B, chloroplastic/mitochondrial [Benincasa hispida] >XP_038876098.1 glutamyl-tRNA(Gln) amidotransferase subunit B, chloroplastic/mitochondrial [Benincasa hispida])

HSP 1 Score: 411.8 bits (1057), Expect = 3.7e-111
Identity = 200/208 (96.15%), Postives = 205/208 (98.56%), Query Frame = 0


Query: 1   MAFVGLRCIRTLPLLFHPAALFSRRKKVLYFSVKASQSQTATQEKQRPMAISPHFDKQII 60
           MAF G+RCIRT PLLFHPAALF+RRK+VLYFSVKASQ+QTATQEKQRP AISPHFDKQII
Sbjct: 1   MAFAGVRCIRTQPLLFHPAALFTRRKRVLYFSVKASQAQTATQEKQRPTAISPHFDKQII 60

Query: 61  DKISKDYEAVIGIETHVQLSTLTKAFCSCPYNYGSSPNTNICPICMGLPGALPVLNSKVI 120
           DKISKDYEA+IGIETHVQLSTLTKAFCSCPYNYGSSPNTNICPICMGLPGALPVLNSKVI
Sbjct: 61  DKISKDYEAIIGIETHVQLSTLTKAFCSCPYNYGSSPNTNICPICMGLPGALPVLNSKVI 120

Query: 121 ESAVKLGLALNCSLSFNSKFDRKQYFYPDLPKGYQISQFDVPIASGGYIDLDLPIEYGGG 180
           ESAVKLGLALNCSLSFNSKFDRKQYFYPDLPKGYQISQFDVPIASGGYIDLDLPIEYGGG
Sbjct: 121 ESAVKLGLALNCSLSFNSKFDRKQYFYPDLPKGYQISQFDVPIASGGYIDLDLPIEYGGG 180

Query: 181 HRRFGITRVHMEEDAGKLLHSESGSYSQ 209
           HRRFGITRVHMEEDAGKLLHSESGSYSQ
Sbjct: 181 HRRFGITRVHMEEDAGKLLHSESGSYSQ 208

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BLAST of CsaV3_2G012380 vs. NCBI nr
Match: KAG6593809.1 (Glutamyl-tRNA(Gln) amidotransferase subunit B, chloroplastic/mitochondrial, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 411.4 bits (1056), Expect = 4.9e-111
Identity = 198/214 (92.52%), Postives = 208/214 (97.20%), Query Frame = 0


Query: 1   MAFVGLRCIRTLPLLFHPAALFSRRKKVLYFSVKASQSQTATQEKQRPMAISPHFDKQII 60
           MAFVGLRCIRT P L HPAALF+RR++VLYFSVK+SQSQTATQEKQRP+AISPHFDKQII
Sbjct: 1   MAFVGLRCIRTQPFLLHPAALFTRRRRVLYFSVKSSQSQTATQEKQRPIAISPHFDKQII 60

Query: 61  DKISKDYEAVIGIETHVQLSTLTKAFCSCPYNYGSSPNTNICPICMGLPGALPVLNSKVI 120
           DKISKDYEA+IGIETHVQLSTLTKAFCSCPYNYG SPNTNICPICMGLPGALPVLNSKVI
Sbjct: 61  DKISKDYEAIIGIETHVQLSTLTKAFCSCPYNYGVSPNTNICPICMGLPGALPVLNSKVI 120

Query: 121 ESAVKLGLALNCSLSFNSKFDRKQYFYPDLPKGYQISQFDVPIASGGYIDLDLPIEYGGG 180
           E AVKLGLALNCSLSFNSKFDRKQYFYPDLPKGYQISQFD+PIASGG+IDLDLPIEYGGG
Sbjct: 121 EFAVKLGLALNCSLSFNSKFDRKQYFYPDLPKGYQISQFDIPIASGGFIDLDLPIEYGGG 180

Query: 181 HRRFGITRVHMEEDAGKLLHSESGSYSQEMTLYP 215
           HRRFGITRVHMEEDAGKLLHSESGSYSQE+ L+P
Sbjct: 181 HRRFGITRVHMEEDAGKLLHSESGSYSQEIILHP 214

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BLAST of CsaV3_2G012380 vs. ExPASy Swiss-Prot
Match: B9SQR9 (Glutamyl-tRNA(Gln) amidotransferase subunit B, chloroplastic/mitochondrial OS=Ricinus communis OX=3988 GN=GATB PE=3 SV=1)

HSP 1 Score: 306.2 bits (783), Expect = 2.9e-82
Identity = 149/206 (72.33%), Postives = 170/206 (82.52%), Query Frame = 0


Query: 1   MAFVGLRCIRTLPLLFHPAALFSRRKKVLYFSVKASQSQTATQEKQR--PMAISPHFDKQ 60
           MA    R I+T PLL +P + F R+  V Y +V  S S TATQEKQ+   + +SP    +
Sbjct: 1   MASTLFRNIQTHPLLLYPTSFFRRKSSVFYCTVN-STSPTATQEKQQCPRIKVSPQTQSK 60

Query: 61  IIDKISKDYEAVIGIETHVQLSTLTKAFCSCPYNYGSSPNTNICPICMGLPGALPVLNSK 120
            +DK++KDYE +IGIETHVQLSTLTKAFCSCPYNYG+ PN+ ICP+CMGLPGALPVLNSK
Sbjct: 61  SLDKLTKDYETIIGIETHVQLSTLTKAFCSCPYNYGAQPNSTICPVCMGLPGALPVLNSK 120

Query: 121 VIESAVKLGLALNCSLSFNSKFDRKQYFYPDLPKGYQISQFDVPIASGGYIDLDLPIEYG 180
           VIE AVKLGLALNC LS NSKFDRKQYFYPDLPKGYQISQFD+PIA+ GY+DLDLP+E+G
Sbjct: 121 VIEFAVKLGLALNCKLSLNSKFDRKQYFYPDLPKGYQISQFDIPIATSGYVDLDLPVEFG 180

Query: 181 GGHRRFGITRVHMEEDAGKLLHSESG 205
           GGHRRFGITRVHMEEDAGKLLHS  G
Sbjct: 181 GGHRRFGITRVHMEEDAGKLLHSGGG 205

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BLAST of CsaV3_2G012380 vs. ExPASy Swiss-Prot
Match: Q9FV81 (Glutamyl-tRNA(Gln) amidotransferase subunit B, chloroplastic/mitochondrial OS=Arabidopsis thaliana OX=3702 GN=GATB PE=2 SV=1)

HSP 1 Score: 282.7 bits (722), Expect = 3.4e-75
Identity = 136/189 (71.96%), Postives = 159/189 (84.13%), Query Frame = 0


Query: 24  RRKKVLYFSVKASQSQTATQEKQR---PMAISPHFDK-QIIDKISKDYEAVIGIETHVQL 83
           RR++   FSV++  SQT T  + +   P  ++P   K   +D+I +DYEAVIGIETHVQL
Sbjct: 23  RRRRSNNFSVRSCGSQTTTTHEAKQSSPTRVAPKNHKSNQLDEILRDYEAVIGIETHVQL 82

Query: 84  STLTKAFCSCPYNYGSSPNTNICPICMGLPGALPVLNSKVIESAVKLGLALNCSLSFNSK 143
           STLTKAFCSC  NYGS PNT+ICP+CMGLPGALPVLNSKV+E  V+LGLALNC LS  SK
Sbjct: 83  STLTKAFCSCSNNYGSYPNTSICPVCMGLPGALPVLNSKVVEFGVRLGLALNCDLSLKSK 142

Query: 144 FDRKQYFYPDLPKGYQISQFDVPIASGGYIDLDLPIEYGGGHRRFGITRVHMEEDAGKLL 203
           FDRKQYFYPDLPKGYQISQFD+PIASGGY+D+D+P+E+GGGHRRFGITRVHMEEDAGKLL
Sbjct: 143 FDRKQYFYPDLPKGYQISQFDIPIASGGYVDVDIPLEFGGGHRRFGITRVHMEEDAGKLL 202

Query: 204 HSESGSYSQ 209
           HS++G YSQ
Sbjct: 203 HSDTGDYSQ 211

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BLAST of CsaV3_2G012380 vs. ExPASy Swiss-Prot
Match: A2ZF53 (Glutamyl-tRNA(Gln) amidotransferase subunit B, chloroplastic/mitochondrial OS=Oryza sativa subsp. indica OX=39946 GN=GATB PE=3 SV=1)

HSP 1 Score: 264.2 bits (674), Expect = 1.3e-69
Identity = 129/208 (62.02%), Postives = 160/208 (76.92%), Query Frame = 0


Query: 1   MAFVGLRCIRTLPLLFHPAALFSRRKKVLYFSVKASQSQTATQEKQRPMAISPHFDKQII 60
           MA   LR +RT  +    A LF    +    S   +++++A     + + ++    K+  
Sbjct: 1   MALTLLRGMRTPVVARRNAGLFFTTLQTPLLSRFTTRAESARAAAHKSIQLA---TKEAA 60

Query: 61  DKISKDYEAVIGIETHVQLSTLTKAFCSCPYNYGSSPNTNICPICMGLPGALPVLNSKVI 120
           ++ ++ +EAVIGIETHVQLST+TKAFCSCPY+YGS PN+ +CP CMG PG LPVLN+KV+
Sbjct: 61  EQKTQSFEAVIGIETHVQLSTVTKAFCSCPYSYGSQPNSTVCPTCMGHPGTLPVLNAKVV 120

Query: 121 ESAVKLGLALNCSLSFNSKFDRKQYFYPDLPKGYQISQFDVPIASGGYIDLDLPIEYGGG 180
           E AVKLGLALNC ++  SKFDRKQYFYPDLPKGYQISQFD+PIA  GY+DLDLP+E+GGG
Sbjct: 121 ECAVKLGLALNCEIATTSKFDRKQYFYPDLPKGYQISQFDIPIAKEGYLDLDLPVEFGGG 180

Query: 181 HRRFGITRVHMEEDAGKLLHSESGSYSQ 209
           HRRFG+TRVHMEEDAGKLLHSESGSYSQ
Sbjct: 181 HRRFGVTRVHMEEDAGKLLHSESGSYSQ 205

[Close]

BLAST of CsaV3_2G012380 vs. ExPASy Swiss-Prot
Match: Q2R2Z0 (Glutamyl-tRNA(Gln) amidotransferase subunit B, chloroplastic/mitochondrial OS=Oryza sativa subsp. japonica OX=39947 GN=GATB PE=2 SV=1)

HSP 1 Score: 261.5 bits (667), Expect = 8.2e-69
Identity = 128/208 (61.54%), Postives = 159/208 (76.44%), Query Frame = 0


Query: 1   MAFVGLRCIRTLPLLFHPAALFSRRKKVLYFSVKASQSQTATQEKQRPMAISPHFDKQII 60
           MA   LR +RT  +    A LF    +    S    ++++A     + + ++    K+  
Sbjct: 1   MALTLLRGMRTPVVARRNAGLFFTTLQSPLLSRFTMRAESARAAAPKSIQLA---TKEAA 60

Query: 61  DKISKDYEAVIGIETHVQLSTLTKAFCSCPYNYGSSPNTNICPICMGLPGALPVLNSKVI 120
           ++ ++ +EAVIGIETHVQLST+TKAFCSCPY+YGS PN+ +CP CMG PG LPVLN+KV+
Sbjct: 61  EQKAQGFEAVIGIETHVQLSTVTKAFCSCPYSYGSQPNSTVCPTCMGHPGTLPVLNAKVV 120

Query: 121 ESAVKLGLALNCSLSFNSKFDRKQYFYPDLPKGYQISQFDVPIASGGYIDLDLPIEYGGG 180
           E AV+LGLALNC ++  SKFDRKQYFYPDLPKGYQISQFD+PIA  GY+DLDLP+E+GGG
Sbjct: 121 ECAVRLGLALNCEIAMTSKFDRKQYFYPDLPKGYQISQFDIPIAKEGYLDLDLPVEFGGG 180

Query: 181 HRRFGITRVHMEEDAGKLLHSESGSYSQ 209
           HRRFG+TRVHMEEDAGKLLHSESGSYSQ
Sbjct: 181 HRRFGVTRVHMEEDAGKLLHSESGSYSQ 205

[Close]

BLAST of CsaV3_2G012380 vs. ExPASy Swiss-Prot
Match: C5Y3V8 (Glutamyl-tRNA(Gln) amidotransferase subunit B, chloroplastic/mitochondrial OS=Sorghum bicolor OX=4558 GN=GATB PE=3 SV=1)

HSP 1 Score: 261.2 bits (666), Expect = 1.1e-68
Identity = 133/211 (63.03%), Postives = 162/211 (76.78%), Query Frame = 0


Query: 1   MAFVGLRCIRT-LPLLFHPAALFS-RRKKVLYFSVKASQSQTATQEKQRPMAISPHF-DK 60
           MA   LR +RT +    +P   F+  R ++  F+ +A  +Q AT+ K  P   S     K
Sbjct: 1   MALTLLRGMRTPVSSGSNPGLFFAVLRPRLSRFTARAESAQ-ATEPKAAPPPRSIQLATK 60

Query: 61  QIIDKISKDYEAVIGIETHVQLSTLTKAFCSCPYNYGSSPNTNICPICMGLPGALPVLNS 120
           +  ++ ++ +EAVIGIETHVQLST+TKAFCSCPY+YG+ PN+ +CP CMG PG LPVLN 
Sbjct: 61  EAAEQKTQGFEAVIGIETHVQLSTVTKAFCSCPYSYGAQPNSTVCPTCMGHPGTLPVLNE 120

Query: 121 KVIESAVKLGLALNCSLSFNSKFDRKQYFYPDLPKGYQISQFDVPIASGGYIDLDLPIEY 180
           KV+E AVKLGLALNC +S  SKFDRKQYFYPDLPKGYQISQFD+PIA  G++DLDLP+E+
Sbjct: 121 KVVECAVKLGLALNCEISMTSKFDRKQYFYPDLPKGYQISQFDIPIAKKGHVDLDLPVEF 180

Query: 181 GGGHRRFGITRVHMEEDAGKLLHSESGSYSQ 209
           GGGHR+FGITRVHMEEDAGKLLHSES SYSQ
Sbjct: 181 GGGHRKFGITRVHMEEDAGKLLHSESSSYSQ 210

[Close]

BLAST of CsaV3_2G012380 vs. ExPASy TrEMBL
Match: A0A0A0LIG1 (Glutamyl-tRNA(Gln) amidotransferase subunit B, chloroplastic/mitochondrial OS=Cucumis sativus OX=3659 GN=GATB PE=3 SV=1)

HSP 1 Score: 429.1 bits (1102), Expect = 1.1e-116
Identity = 211/211 (100.00%), Postives = 211/211 (100.00%), Query Frame = 0


Query: 1   MAFVGLRCIRTLPLLFHPAALFSRRKKVLYFSVKASQSQTATQEKQRPMAISPHFDKQII 60
           MAFVGLRCIRTLPLLFHPAALFSRRKKVLYFSVKASQSQTATQEKQRPMAISPHFDKQII
Sbjct: 1   MAFVGLRCIRTLPLLFHPAALFSRRKKVLYFSVKASQSQTATQEKQRPMAISPHFDKQII 60

Query: 61  DKISKDYEAVIGIETHVQLSTLTKAFCSCPYNYGSSPNTNICPICMGLPGALPVLNSKVI 120
           DKISKDYEAVIGIETHVQLSTLTKAFCSCPYNYGSSPNTNICPICMGLPGALPVLNSKVI
Sbjct: 61  DKISKDYEAVIGIETHVQLSTLTKAFCSCPYNYGSSPNTNICPICMGLPGALPVLNSKVI 120

Query: 121 ESAVKLGLALNCSLSFNSKFDRKQYFYPDLPKGYQISQFDVPIASGGYIDLDLPIEYGGG 180
           ESAVKLGLALNCSLSFNSKFDRKQYFYPDLPKGYQISQFDVPIASGGYIDLDLPIEYGGG
Sbjct: 121 ESAVKLGLALNCSLSFNSKFDRKQYFYPDLPKGYQISQFDVPIASGGYIDLDLPIEYGGG 180

Query: 181 HRRFGITRVHMEEDAGKLLHSESGSYSQEMT 212
           HRRFGITRVHMEEDAGKLLHSESGSYSQEMT
Sbjct: 181 HRRFGITRVHMEEDAGKLLHSESGSYSQEMT 211

[Close]

BLAST of CsaV3_2G012380 vs. ExPASy TrEMBL
Match: A0A1S3CDF2 (Glutamyl-tRNA(Gln) amidotransferase subunit B, chloroplastic/mitochondrial OS=Cucumis melo OX=3656 GN=LOC103499436 PE=3 SV=1)

HSP 1 Score: 411.8 bits (1057), Expect = 1.8e-111
Identity = 199/208 (95.67%), Postives = 206/208 (99.04%), Query Frame = 0


Query: 1   MAFVGLRCIRTLPLLFHPAALFSRRKKVLYFSVKASQSQTATQEKQRPMAISPHFDKQII 60
           MAF+G+R I+TLPLLFHPA LFSRRKK++YFSVKASQSQTATQEKQRP+AISPHFDKQII
Sbjct: 1   MAFIGMRSIQTLPLLFHPAVLFSRRKKIMYFSVKASQSQTATQEKQRPIAISPHFDKQII 60

Query: 61  DKISKDYEAVIGIETHVQLSTLTKAFCSCPYNYGSSPNTNICPICMGLPGALPVLNSKVI 120
           DKISKDYEA+IGIETHVQLSTLTKAFCSCPYNYGSSPNTNICPICMGLPGALPVLNSKVI
Sbjct: 61  DKISKDYEAIIGIETHVQLSTLTKAFCSCPYNYGSSPNTNICPICMGLPGALPVLNSKVI 120

Query: 121 ESAVKLGLALNCSLSFNSKFDRKQYFYPDLPKGYQISQFDVPIASGGYIDLDLPIEYGGG 180
           ESAVKLGLALNCSLSFNSKFDRKQYFYPDLPKGYQISQFDVPIASGGYIDLDLPIEYGGG
Sbjct: 121 ESAVKLGLALNCSLSFNSKFDRKQYFYPDLPKGYQISQFDVPIASGGYIDLDLPIEYGGG 180

Query: 181 HRRFGITRVHMEEDAGKLLHSESGSYSQ 209
           HRRFGITRVHMEEDAGKLLHSESGSYSQ
Sbjct: 181 HRRFGITRVHMEEDAGKLLHSESGSYSQ 208

[Close]

BLAST of CsaV3_2G012380 vs. ExPASy TrEMBL
Match: A0A6J1HL33 (Glutamyl-tRNA(Gln) amidotransferase subunit B, chloroplastic/mitochondrial OS=Cucurbita moschata OX=3662 GN=LOC111464529 PE=3 SV=1)

HSP 1 Score: 402.1 bits (1032), Expect = 1.4e-108
Identity = 194/208 (93.27%), Postives = 202/208 (97.12%), Query Frame = 0


Query: 1   MAFVGLRCIRTLPLLFHPAALFSRRKKVLYFSVKASQSQTATQEKQRPMAISPHFDKQII 60
           MAFVGLRCIRT P L HPAALF+RR++VLYFSVK+SQSQTATQEKQRP+AISPHFDKQII
Sbjct: 1   MAFVGLRCIRTQPFLLHPAALFTRRRRVLYFSVKSSQSQTATQEKQRPIAISPHFDKQII 60

Query: 61  DKISKDYEAVIGIETHVQLSTLTKAFCSCPYNYGSSPNTNICPICMGLPGALPVLNSKVI 120
           DKISKDYEA+IGIETHVQLSTLTKAFCSCPYNYG SPNTNICPICMGLPGALPVLNSKVI
Sbjct: 61  DKISKDYEAIIGIETHVQLSTLTKAFCSCPYNYGVSPNTNICPICMGLPGALPVLNSKVI 120

Query: 121 ESAVKLGLALNCSLSFNSKFDRKQYFYPDLPKGYQISQFDVPIASGGYIDLDLPIEYGGG 180
           E AVKLG ALNCSLSFNSKFDRKQYFYPDLPKGYQISQFD+PIASGG+IDLDLPIEYGGG
Sbjct: 121 EFAVKLGFALNCSLSFNSKFDRKQYFYPDLPKGYQISQFDIPIASGGFIDLDLPIEYGGG 180

Query: 181 HRRFGITRVHMEEDAGKLLHSESGSYSQ 209
           HRRFGITRVHMEEDAGKLLHSESGSYSQ
Sbjct: 181 HRRFGITRVHMEEDAGKLLHSESGSYSQ 208

[Close]

BLAST of CsaV3_2G012380 vs. ExPASy TrEMBL
Match: A0A6J1KDS0 (Glutamyl-tRNA(Gln) amidotransferase subunit B, chloroplastic/mitochondrial OS=Cucurbita maxima OX=3661 GN=LOC111494743 PE=3 SV=1)

HSP 1 Score: 400.2 bits (1027), Expect = 5.4e-108
Identity = 192/208 (92.31%), Postives = 203/208 (97.60%), Query Frame = 0


Query: 1   MAFVGLRCIRTLPLLFHPAALFSRRKKVLYFSVKASQSQTATQEKQRPMAISPHFDKQII 60
           MAFVGLRCIRT P L HPAALF++R++VLYFSVK+SQSQTATQEKQRP+AISPHFDKQII
Sbjct: 1   MAFVGLRCIRTQPFLLHPAALFTKRRRVLYFSVKSSQSQTATQEKQRPIAISPHFDKQII 60

Query: 61  DKISKDYEAVIGIETHVQLSTLTKAFCSCPYNYGSSPNTNICPICMGLPGALPVLNSKVI 120
           D+ISKDYEA+IGIETHVQLSTLTKAFCSCPYNYG SPNTNICPICMGLPGALPVLN+KVI
Sbjct: 61  DRISKDYEAIIGIETHVQLSTLTKAFCSCPYNYGVSPNTNICPICMGLPGALPVLNTKVI 120

Query: 121 ESAVKLGLALNCSLSFNSKFDRKQYFYPDLPKGYQISQFDVPIASGGYIDLDLPIEYGGG 180
           E AVKLGLALNCSLSFNSKFDRKQYFYPDLPKGYQISQFD+PIASGG+IDLDLPIEYGGG
Sbjct: 121 EFAVKLGLALNCSLSFNSKFDRKQYFYPDLPKGYQISQFDIPIASGGFIDLDLPIEYGGG 180

Query: 181 HRRFGITRVHMEEDAGKLLHSESGSYSQ 209
           HRRFGITRVHMEEDAGKLLHSESGSYSQ
Sbjct: 181 HRRFGITRVHMEEDAGKLLHSESGSYSQ 208

[Close]

BLAST of CsaV3_2G012380 vs. ExPASy TrEMBL
Match: A0A6J1CA53 (Glutamyl-tRNA(Gln) amidotransferase subunit B, chloroplastic/mitochondrial OS=Momordica charantia OX=3673 GN=LOC111009788 PE=3 SV=1)

HSP 1 Score: 399.1 bits (1024), Expect = 1.2e-107
Identity = 192/208 (92.31%), Postives = 201/208 (96.63%), Query Frame = 0


Query: 1   MAFVGLRCIRTLPLLFHPAALFSRRKKVLYFSVKASQSQTATQEKQRPMAISPHFDKQII 60
           MAF GLRC RT PLL +PAALFSRR +VLYFSVKASQSQTATQEKQRP AISPHFDK++I
Sbjct: 1   MAFAGLRCFRTQPLLIYPAALFSRRNRVLYFSVKASQSQTATQEKQRPTAISPHFDKKVI 60

Query: 61  DKISKDYEAVIGIETHVQLSTLTKAFCSCPYNYGSSPNTNICPICMGLPGALPVLNSKVI 120
           DKISKDYEA+IGIETHVQLSTLTKAFCSCPYNYGSSPNTNICPICMGLPGALPVLNSKV+
Sbjct: 61  DKISKDYEAIIGIETHVQLSTLTKAFCSCPYNYGSSPNTNICPICMGLPGALPVLNSKVV 120

Query: 121 ESAVKLGLALNCSLSFNSKFDRKQYFYPDLPKGYQISQFDVPIASGGYIDLDLPIEYGGG 180
           + AVKLGLALNCSLSFNSKFDRKQYFYPDLPKGYQISQFDVPIASGGYIDLD+PIE+GGG
Sbjct: 121 DFAVKLGLALNCSLSFNSKFDRKQYFYPDLPKGYQISQFDVPIASGGYIDLDIPIEFGGG 180

Query: 181 HRRFGITRVHMEEDAGKLLHSESGSYSQ 209
           HRRFGITRVHMEEDAGKLLHSESGSYSQ
Sbjct: 181 HRRFGITRVHMEEDAGKLLHSESGSYSQ 208

[Close]

BLAST of CsaV3_2G012380 vs. TAIR 10
Match: AT1G48520.2 (GLU-ADT subunit B )

HSP 1 Score: 282.7 bits (722), Expect = 2.4e-76
Identity = 136/189 (71.96%), Postives = 159/189 (84.13%), Query Frame = 0


Query: 24  RRKKVLYFSVKASQSQTATQEKQR---PMAISPHFDK-QIIDKISKDYEAVIGIETHVQL 83
           RR++   FSV++  SQT T  + +   P  ++P   K   +D+I +DYEAVIGIETHVQL
Sbjct: 23  RRRRSNNFSVRSCGSQTTTTHEAKQSSPTRVAPKNHKSNQLDEILRDYEAVIGIETHVQL 82

Query: 84  STLTKAFCSCPYNYGSSPNTNICPICMGLPGALPVLNSKVIESAVKLGLALNCSLSFNSK 143
           STLTKAFCSC  NYGS PNT+ICP+CMGLPGALPVLNSKV+E  V+LGLALNC LS  SK
Sbjct: 83  STLTKAFCSCSNNYGSYPNTSICPVCMGLPGALPVLNSKVVEFGVRLGLALNCDLSLKSK 142

Query: 144 FDRKQYFYPDLPKGYQISQFDVPIASGGYIDLDLPIEYGGGHRRFGITRVHMEEDAGKLL 203
           FDRKQYFYPDLPKGYQISQFD+PIASGGY+D+D+P+E+GGGHRRFGITRVHMEEDAGKLL
Sbjct: 143 FDRKQYFYPDLPKGYQISQFDIPIASGGYVDVDIPLEFGGGHRRFGITRVHMEEDAGKLL 202

Query: 204 HSESGSYSQ 209
           HS++G YSQ
Sbjct: 203 HSDTGDYSQ 211

[Close]

BLAST of CsaV3_2G012380 vs. TAIR 10
Match: AT1G48520.3 (GLU-ADT subunit B )

HSP 1 Score: 282.7 bits (722), Expect = 2.4e-76
Identity = 136/189 (71.96%), Postives = 159/189 (84.13%), Query Frame = 0


Query: 24  RRKKVLYFSVKASQSQTATQEKQR---PMAISPHFDK-QIIDKISKDYEAVIGIETHVQL 83
           RR++   FSV++  SQT T  + +   P  ++P   K   +D+I +DYEAVIGIETHVQL
Sbjct: 23  RRRRSNNFSVRSCGSQTTTTHEAKQSSPTRVAPKNHKSNQLDEILRDYEAVIGIETHVQL 82

Query: 84  STLTKAFCSCPYNYGSSPNTNICPICMGLPGALPVLNSKVIESAVKLGLALNCSLSFNSK 143
           STLTKAFCSC  NYGS PNT+ICP+CMGLPGALPVLNSKV+E  V+LGLALNC LS  SK
Sbjct: 83  STLTKAFCSCSNNYGSYPNTSICPVCMGLPGALPVLNSKVVEFGVRLGLALNCDLSLKSK 142

Query: 144 FDRKQYFYPDLPKGYQISQFDVPIASGGYIDLDLPIEYGGGHRRFGITRVHMEEDAGKLL 203
           FDRKQYFYPDLPKGYQISQFD+PIASGGY+D+D+P+E+GGGHRRFGITRVHMEEDAGKLL
Sbjct: 143 FDRKQYFYPDLPKGYQISQFDIPIASGGYVDVDIPLEFGGGHRRFGITRVHMEEDAGKLL 202

Query: 204 HSESGSYSQ 209
           HS++G YSQ
Sbjct: 203 HSDTGDYSQ 211

[Close]

BLAST of CsaV3_2G012380 vs. TAIR 10
Match: AT1G48520.1 (GLU-ADT subunit B )

HSP 1 Score: 282.7 bits (722), Expect = 2.4e-76
Identity = 136/189 (71.96%), Postives = 159/189 (84.13%), Query Frame = 0


Query: 24  RRKKVLYFSVKASQSQTATQEKQR---PMAISPHFDK-QIIDKISKDYEAVIGIETHVQL 83
           RR++   FSV++  SQT T  + +   P  ++P   K   +D+I +DYEAVIGIETHVQL
Sbjct: 23  RRRRSNNFSVRSCGSQTTTTHEAKQSSPTRVAPKNHKSNQLDEILRDYEAVIGIETHVQL 82

Query: 84  STLTKAFCSCPYNYGSSPNTNICPICMGLPGALPVLNSKVIESAVKLGLALNCSLSFNSK 143
           STLTKAFCSC  NYGS PNT+ICP+CMGLPGALPVLNSKV+E  V+LGLALNC LS  SK
Sbjct: 83  STLTKAFCSCSNNYGSYPNTSICPVCMGLPGALPVLNSKVVEFGVRLGLALNCDLSLKSK 142

Query: 144 FDRKQYFYPDLPKGYQISQFDVPIASGGYIDLDLPIEYGGGHRRFGITRVHMEEDAGKLL 203
           FDRKQYFYPDLPKGYQISQFD+PIASGGY+D+D+P+E+GGGHRRFGITRVHMEEDAGKLL
Sbjct: 143 FDRKQYFYPDLPKGYQISQFDIPIASGGYVDVDIPLEFGGGHRRFGITRVHMEEDAGKLL 202

Query: 204 HSESGSYSQ 209
           HS++G YSQ
Sbjct: 203 HSDTGDYSQ 211

The following BLAST results are available for this feature:

BLAST of CsaV3_2G012380 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8651796.1	1.4e-118	100.00	hypothetical protein Csa_005907 [Cucumis sativus]	[more]
XP_011649124.1	1.6e-114	100.00	glutamyl-tRNA(Gln) amidotransferase subunit B, chloroplastic/mitochondrial [Cucu...	[more]
XP_008460666.1	3.7e-111	95.67	PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit B, chloroplastic/mitochon...	[more]
XP_038876097.1	3.7e-111	96.15	glutamyl-tRNA(Gln) amidotransferase subunit B, chloroplastic/mitochondrial [Beni...	[more]
KAG6593809.1	4.9e-111	92.52	Glutamyl-tRNA(Gln) amidotransferase subunit B, chloroplastic/mitochondrial, part...	[more]

BLAST of CsaV3_2G012380 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
B9SQR9	2.9e-82	72.33	Glutamyl-tRNA(Gln) amidotransferase subunit B, chloroplastic/mitochondrial OS=Ri...	[more]
Q9FV81	3.4e-75	71.96	Glutamyl-tRNA(Gln) amidotransferase subunit B, chloroplastic/mitochondrial OS=Ar...	[more]
A2ZF53	1.3e-69	62.02	Glutamyl-tRNA(Gln) amidotransferase subunit B, chloroplastic/mitochondrial OS=Or...	[more]
Q2R2Z0	8.2e-69	61.54	Glutamyl-tRNA(Gln) amidotransferase subunit B, chloroplastic/mitochondrial OS=Or...	[more]
C5Y3V8	1.1e-68	63.03	Glutamyl-tRNA(Gln) amidotransferase subunit B, chloroplastic/mitochondrial OS=So...	[more]

BLAST of CsaV3_2G012380 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LIG1	1.1e-116	100.00	Glutamyl-tRNA(Gln) amidotransferase subunit B, chloroplastic/mitochondrial OS=Cu...	[more]
A0A1S3CDF2	1.8e-111	95.67	Glutamyl-tRNA(Gln) amidotransferase subunit B, chloroplastic/mitochondrial OS=Cu...	[more]
A0A6J1HL33	1.4e-108	93.27	Glutamyl-tRNA(Gln) amidotransferase subunit B, chloroplastic/mitochondrial OS=Cu...	[more]
A0A6J1KDS0	5.4e-108	92.31	Glutamyl-tRNA(Gln) amidotransferase subunit B, chloroplastic/mitochondrial OS=Cu...	[more]
A0A6J1CA53	1.2e-107	92.31	Glutamyl-tRNA(Gln) amidotransferase subunit B, chloroplastic/mitochondrial OS=Mo...	[more]

BLAST of CsaV3_2G012380 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G48520.2	2.4e-76	71.96	GLU-ADT subunit B	[more]
AT1G48520.3	2.4e-76	71.96	GLU-ADT subunit B	[more]
AT1G48520.1	2.4e-76	71.96	GLU-ADT subunit B	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006075	Aspartyl/Glutamyl-tRNA(Gln) amidotransferase, subunit B/E, catalytic	PFAM	PF02934	GatB_N	coord: 70..203 e-value: 1.1E-48 score: 166.0
IPR017959	Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, subunit B /E	PANTHER	PTHR11659	GLUTAMYL-TRNA GLN AMIDOTRANSFERASE SUBUNIT B MITOCHONDRIAL AND PROKARYOTIC PET112-RELATED	coord: 56..208
None	No IPR available	PANTHER	PTHR11659:SF0	GLUTAMYL-TRNA(GLN) AMIDOTRANSFERASE SUBUNIT B, MITOCHONDRIAL	coord: 56..208
IPR014746	Glutamine synthetase/guanido kinase, catalytic domain	SUPERFAMILY	55931	Glutamine synthetase/guanido kinase	coord: 68..205

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_2G012380.1	CsaV3_2G012380.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0016884	carbon-nitrogen ligase activity, with glutamine as amido-N-donor
molecular_function	GO:0003824	catalytic activity
molecular_function	GO:0016874	ligase activity