CsaV3_2G011450 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_2G011450
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr2: 8746103 .. 8746510 (+)
RNA-Seq Expression	CsaV3_2G011450
Synteny	CsaV3_2G011450

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGACGTCAGAGATCAGGACGGCGAGGATTTGAACGGAGAACGTGATAAAAGATGTACACAAAAAAAGATGTGGCTGAGAATAACGTTTAACTATTTGCGACAGAGACAAAATGATGGAAGGATGGAACGTCTACCTGGTTGCGATGGAGGCAAAGGTGGAGAGACAAAGCCAAGAGAGAAAAGAACACGACGGGTTTCTTCTTGGGTCACGCATGAAGAGCGAGAGAATGTCCTTGGGTTGTGTATATGGATAACAATCTATGGTTTAGCACCGTTTGGATTTTGGACTGAAGGAATTGGAATGGGAATAAGGGTGGAAATGAGAATGACATATGCTATTTGTACACAATTTTGTAATTGCATATTATCTTTTAATAATATGAAAATTAATTTTTTTTTATAA

mRNA sequence

ATGGAGGACGTCAGAGATCAGGACGGCGAGGATTTGAACGGAGAACGTGATAAAAGATGTACACAAAAAAAGATGTGGCTGAGAATAACGTTTAACTATTTGCGACAGAGACAAAATGATGGAAGGATGGAACGTCTACCTGGTTGCGATGGAGGCAAAGGTGGAGAGACAAAGCCAAGAGAGAAAAGAACACGACGGGTTTCTTCTTGGGTCACGCATGAAGAGCGAGAGAATGTCCTTGGGTTGTGTATATGGATAACAATCTATGGTTTAGCACCGTTTGGATTTTGGACTGAAGGAATTGGAATGGGAATAAGGGTGGAAATGAGAATGACATATGCTATTTGTACACAATTTTGTAATTGCATATTATCTTTTAATAATATGAAAATTAATTTTTTTTTATAA

Coding sequence (CDS)

ATGGAGGACGTCAGAGATCAGGACGGCGAGGATTTGAACGGAGAACGTGATAAAAGATGTACACAAAAAAAGATGTGGCTGAGAATAACGTTTAACTATTTGCGACAGAGACAAAATGATGGAAGGATGGAACGTCTACCTGGTTGCGATGGAGGCAAAGGTGGAGAGACAAAGCCAAGAGAGAAAAGAACACGACGGGTTTCTTCTTGGGTCACGCATGAAGAGCGAGAGAATGTCCTTGGGTTGTGTATATGGATAACAATCTATGGTTTAGCACCGTTTGGATTTTGGACTGAAGGAATTGGAATGGGAATAAGGGTGGAAATGAGAATGACATATGCTATTTGTACACAATTTTGTAATTGCATATTATCTTTTAATAATATGAAAATTAATTTTTTTTTATAA

Protein sequence

MEDVRDQDGEDLNGERDKRCTQKKMWLRITFNYLRQRQNDGRMERLPGCDGGKGGETKPREKRTRRVSSWVTHEERENVLGLCIWITIYGLAPFGFWTEGIGMGIRVEMRMTYAICTQFCNCILSFNNMKINFFL*

Homology

[Close]

BLAST of CsaV3_2G011450 vs. NCBI nr
Match: KGN61463.1 (hypothetical protein Csa_006075 [Cucumis sativus])

HSP 1 Score: 288.5 bits (737), Expect = 3.0e-74
Identity = 135/135 (100.00%), Postives = 135/135 (100.00%), Query Frame = 0


Query: 1   MEDVRDQDGEDLNGERDKRCTQKKMWLRITFNYLRQRQNDGRMERLPGCDGGKGGETKPR 60
           MEDVRDQDGEDLNGERDKRCTQKKMWLRITFNYLRQRQNDGRMERLPGCDGGKGGETKPR
Sbjct: 1   MEDVRDQDGEDLNGERDKRCTQKKMWLRITFNYLRQRQNDGRMERLPGCDGGKGGETKPR 60

Query: 61  EKRTRRVSSWVTHEERENVLGLCIWITIYGLAPFGFWTEGIGMGIRVEMRMTYAICTQFC 120
           EKRTRRVSSWVTHEERENVLGLCIWITIYGLAPFGFWTEGIGMGIRVEMRMTYAICTQFC
Sbjct: 61  EKRTRRVSSWVTHEERENVLGLCIWITIYGLAPFGFWTEGIGMGIRVEMRMTYAICTQFC 120

Query: 121 NCILSFNNMKINFFL 136
           NCILSFNNMKINFFL
Sbjct: 121 NCILSFNNMKINFFL 135

[Close]

BLAST of CsaV3_2G011450 vs. ExPASy TrEMBL
Match: A0A0A0LI63 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G136690 PE=4 SV=1)

HSP 1 Score: 288.5 bits (737), Expect = 1.5e-74
Identity = 135/135 (100.00%), Postives = 135/135 (100.00%), Query Frame = 0


Query: 1   MEDVRDQDGEDLNGERDKRCTQKKMWLRITFNYLRQRQNDGRMERLPGCDGGKGGETKPR 60
           MEDVRDQDGEDLNGERDKRCTQKKMWLRITFNYLRQRQNDGRMERLPGCDGGKGGETKPR
Sbjct: 1   MEDVRDQDGEDLNGERDKRCTQKKMWLRITFNYLRQRQNDGRMERLPGCDGGKGGETKPR 60

Query: 61  EKRTRRVSSWVTHEERENVLGLCIWITIYGLAPFGFWTEGIGMGIRVEMRMTYAICTQFC 120
           EKRTRRVSSWVTHEERENVLGLCIWITIYGLAPFGFWTEGIGMGIRVEMRMTYAICTQFC
Sbjct: 61  EKRTRRVSSWVTHEERENVLGLCIWITIYGLAPFGFWTEGIGMGIRVEMRMTYAICTQFC 120

Query: 121 NCILSFNNMKINFFL 136
           NCILSFNNMKINFFL
Sbjct: 121 NCILSFNNMKINFFL 135

The following BLAST results are available for this feature:

BLAST of CsaV3_2G011450 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN61463.1	3.0e-74	100.00	hypothetical protein Csa_006075 [Cucumis sativus]	[more]

BLAST of CsaV3_2G011450 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_2G011450 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LI63	1.5e-74	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G136690 PE=4 SV=1	[more]

BLAST of CsaV3_2G011450 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 42..68

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_2G011450.1	CsaV3_2G011450.1	mRNA