CsaV3_2G011350 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_2G011350
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr2: 8614834 .. 8615176 (-)
RNA-Seq Expression	CsaV3_2G011350
Synteny	CsaV3_2G011350

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTAAGAGTCAAACCTTTTCGAAAGGGGGGAAAAGAAACGTTGATGTCAGAGTGTTTGGGGATGCCCAGGTTGCTAAGACCAAGTTCCAGAAGTTGCCAAACGTCGTGGGTTTGCCGATGGTCGCAGTCGGCTAAAGAGGTTTCGTGGATTTGCCGAGTGTTTGGGGTCGCGCAAGATAGAAGATGAAGCTGGCGTCTGTTGATACCGTGTAAGGATTCCCTGTCGCAAAATGTGGCCTCGCCGGAGAAAGAAAAGAGAAGAAGGGCAGGGAAGGGAATGAAGGCGTGGGAGGAGCTGGTACGGGGTGAAAACGCAGGGGAGGGGAGAGAGAGGGACTAG

mRNA sequence

ATGGGTAAGAGTCAAACCTTTTCGAAAGGGGGGAAAAGAAACGTTGATGTCAGAGTGTTTGGGGATGCCCAGGTTGCTAAGACCAAGTTCCAGAAGTTGCCAAACGTCGTGGGTTTGCCGATGGTCGCAGATTCCCTGTCGCAAAATGTGGCCTCGCCGGAGAAAGAAAAGAGAAGAAGGGCAGGGAAGGGAATGAAGGCGTGGGAGGAGCTGGTACGGGGTGAAAACGCAGGGGAGGGGAGAGAGAGGGACTAG

Coding sequence (CDS)

ATGGGTAAGAGTCAAACCTTTTCGAAAGGGGGGAAAAGAAACGTTGATGTCAGAGTGTTTGGGGATGCCCAGGTTGCTAAGACCAAGTTCCAGAAGTTGCCAAACGTCGTGGGTTTGCCGATGGTCGCAGATTCCCTGTCGCAAAATGTGGCCTCGCCGGAGAAAGAAAAGAGAAGAAGGGCAGGGAAGGGAATGAAGGCGTGGGAGGAGCTGGTACGGGGTGAAAACGCAGGGGAGGGGAGAGAGAGGGACTAG

Protein sequence

MGKSQTFSKGGKRNVDVRVFGDAQVAKTKFQKLPNVVGLPMVADSLSQNVASPEKEKRRRAGKGMKAWEELVRGENAGEGRERD*

Homology

[Close]

BLAST of CsaV3_2G011350 vs. NCBI nr
Match: KGN61452.1 (hypothetical protein Csa_006688 [Cucumis sativus])

HSP 1 Score: 165.6 bits (418), Expect = 1.8e-37
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 0


Query: 1  MGKSQTFSKGGKRNVDVRVFGDAQVAKTKFQKLPNVVGLPMVADSLSQNVASPEKEKRRR 60
          MGKSQTFSKGGKRNVDVRVFGDAQVAKTKFQKLPNVVGLPMVADSLSQNVASPEKEKRRR
Sbjct: 1  MGKSQTFSKGGKRNVDVRVFGDAQVAKTKFQKLPNVVGLPMVADSLSQNVASPEKEKRRR 60

Query: 61 AGKGMKAWEELVRGENAGEGRERD 85
          AGKGMKAWEELVRGENAGEGRERD
Sbjct: 61 AGKGMKAWEELVRGENAGEGRERD 84

[Close]

BLAST of CsaV3_2G011350 vs. NCBI nr
Match: KAA0032360.1 (hypothetical protein E6C27_scaffold219G002260 [Cucumis melo var. makuwa] >TYK31631.1 hypothetical protein E5676_scaffold340G00220 [Cucumis melo var. makuwa])

HSP 1 Score: 65.1 bits (157), Expect = 3.4e-07
Identity = 35/45 (77.78%), Postives = 38/45 (84.44%), Query Frame = 0


Query: 44 DSLSQNVASPEKEKRRRAG----KGMKAWEELVRGENAGEGRERD 85
          +SLSQNVASPEKEKRRRA     K + AWEEL+RGENAGEGRERD
Sbjct: 11 ESLSQNVASPEKEKRRRAAHRAKKKVNAWEELMRGENAGEGRERD 55

[Close]

BLAST of CsaV3_2G011350 vs. ExPASy TrEMBL
Match: A0A0A0LL36 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G128620 PE=4 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 8.9e-38
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 0


Query: 1  MGKSQTFSKGGKRNVDVRVFGDAQVAKTKFQKLPNVVGLPMVADSLSQNVASPEKEKRRR 60
          MGKSQTFSKGGKRNVDVRVFGDAQVAKTKFQKLPNVVGLPMVADSLSQNVASPEKEKRRR
Sbjct: 1  MGKSQTFSKGGKRNVDVRVFGDAQVAKTKFQKLPNVVGLPMVADSLSQNVASPEKEKRRR 60

Query: 61 AGKGMKAWEELVRGENAGEGRERD 85
          AGKGMKAWEELVRGENAGEGRERD
Sbjct: 61 AGKGMKAWEELVRGENAGEGRERD 84

[Close]

BLAST of CsaV3_2G011350 vs. ExPASy TrEMBL
Match: A0A5A7SNJ9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold340G00220 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 1.6e-07
Identity = 35/45 (77.78%), Postives = 38/45 (84.44%), Query Frame = 0


Query: 44 DSLSQNVASPEKEKRRRAG----KGMKAWEELVRGENAGEGRERD 85
          +SLSQNVASPEKEKRRRA     K + AWEEL+RGENAGEGRERD
Sbjct: 11 ESLSQNVASPEKEKRRRAAHRAKKKVNAWEELMRGENAGEGRERD 55

The following BLAST results are available for this feature:

BLAST of CsaV3_2G011350 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN61452.1	1.8e-37	100.00	hypothetical protein Csa_006688 [Cucumis sativus]	[more]
KAA0032360.1	3.4e-07	77.78	hypothetical protein E6C27_scaffold219G002260 [Cucumis melo var. makuwa] >TYK316...	[more]

BLAST of CsaV3_2G011350 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_2G011350 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LL36	8.9e-38	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G128620 PE=4 SV=1	[more]
A0A5A7SNJ9	1.6e-07	77.78	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of CsaV3_2G011350 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 51..84
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 48..84

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_2G011350.1	CsaV3_2G011350.1	mRNA