CsaV3_2G010340 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_2G010340
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr2: 7344373 .. 7344523 (-)
RNA-Seq Expression	CsaV3_2G010340
Synteny	CsaV3_2G010340

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AGGGATAACGGTGCGGCGACGATGGCTCAAAACTCGTGATGACGCAGAGACAGAGGAACAGGAGCTGGCTCAGCTTGGGTGGAGGACAACTCGCCCTGACAGTTCTCGTGAACGGCTCGAGAACGGAGAACTGACTCGGTTAGGTTGCTGA

mRNA sequence

GGGATAACGGTGCGGCGACGATGGCTCAAAACTCGTGATGACGCAGAGACAGAGGAACAGGAGCTGGCTCAGCTTGGGTGGAGGACAACTCGCCCTGACAGTTCTCGTGAACGGCTCGAGAACGGAGAACTGACTCGGTTAGGTTGCTG

Coding sequence (CDS)

GGGATAACGGTGCGGCGACGATGGCTCAAAACTCGTGATGACGCAGAGACAGAGGAACAGGAGCTGGCTCAGCTTGGGTGGAGGACAACTCGCCCTGACAGTTCTCGTGAACGGCTCGAGAACGGAGAACTGACTCGGTTAGGTTGCTG

Protein sequence

GITVRRRWLKTRDDAETEEQELAQLGWRTTRPDSSRERLENGELTRLGCX

Homology

[Close]

BLAST of CsaV3_2G010340 vs. NCBI nr
Match: KAE8651735.1 (hypothetical protein Csa_023615, partial [Cucumis sativus])

HSP 1 Score: 102.4 bits (254), Expect = 1.1e-18
Identity = 49/49 (100.00%), Postives = 49/49 (100.00%), Query Frame = 0


Query: 1  GITVRRRWLKTRDDAETEEQELAQLGWRTTRPDSSRERLENGELTRLGC 50
          GITVRRRWLKTRDDAETEEQELAQLGWRTTRPDSSRERLENGELTRLGC
Sbjct: 1  GITVRRRWLKTRDDAETEEQELAQLGWRTTRPDSSRERLENGELTRLGC 49

[Close]

BLAST of CsaV3_2G010340 vs. ExPASy TrEMBL
Match: A0A0A0LJS9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G093810 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 3.0e-17
Identity = 47/47 (100.00%), Postives = 47/47 (100.00%), Query Frame = 0


Query: 1  GITVRRRWLKTRDDAETEEQELAQLGWRTTRPDSSRERLENGELTRL 48
          GITVRRRWLKTRDDAETEEQELAQLGWRTTRPDSSRERLENGELTRL
Sbjct: 7  GITVRRRWLKTRDDAETEEQELAQLGWRTTRPDSSRERLENGELTRL 53

The following BLAST results are available for this feature:

BLAST of CsaV3_2G010340 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8651735.1	1.1e-18	100.00	hypothetical protein Csa_023615, partial [Cucumis sativus]	[more]

BLAST of CsaV3_2G010340 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_2G010340 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LJS9	3.0e-17	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G093810 PE=4 SV=1	[more]

BLAST of CsaV3_2G010340 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 19..49

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_2G010340.1	CsaV3_2G010340.1	mRNA