CsaV3_2G010050 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_2G010050
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr2: 6733520 .. 6734064 (+)
RNA-Seq ExpressionCsaV3_2G010050
SyntenyCsaV3_2G010050
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAAATTGATTCATCCCCTTCAAGGCAAGAACCTAAAAACTTCCTTGCCTTGGTACAATTTGACCCAATTAGCCAAACTGAATTGCCTGGTCAAGAAGATTCAATTCAGAAGGAATTTCAAGACCCTCTAATTGATCTTAACGCGTCCAGTGATGATGCATTCATCAAGCAAAAAAATGGGGCAGATGGCCCAAACCTATTCTCAGAAAGGAATAAAGTTCCTGAGGAGGTAATTAATGATCCATACTTCACATGGAGAAAGAAATAATTGCAGAGGAAGCTGGGAGACACACCTTCCTTCCCTGCCTAGAGAAACTGTAGAAGGTTCAACGCAAAACGATAAGAGTAAAGAAGGAGTGAAGGAAGAGGACAAAGAAGTTGTTGATGAGGATTATATCTTCTATTTCATAAATCACCACGTATTCATTGGTCTAGTGCCAAAGAAATATTCAAGAAATGCATTTGCGAAGTGAAAAGCAGTTGAGTGACTTAGAACTTAAAGTAGACAACGCAAATGAAAAATCTGAGGCACGAATAGAATAA

mRNA sequence

ATGCAAATTGATTCATCCCCTTCAAGGCAAGAACCTAAAAACTTCCTTGCCTTGGTACAATTTGACCCAATTAGCCAAACTGAATTGCCTGGTCAAGAAGATTCAATTCAGAAGGAATTTCAAGACCCTCTAATTGATCTTAACGCGTCCAGTGATGATGCATTCATCAAGCAAAAAAATGGGGCAGATGGCCCAAACCTATTCTCAGAAAGGAATAAAGTTCCTGAGGAGTGCCAAAGAAATATTCAAGAAATGCATTTGCGAAGTGAAAAGCAGTTGAGTGACTTAGAACTTAAAGTAGACAACGCAAATGAAAAATCTGAGGCACGAATAGAATAA

Coding sequence (CDS)

ATGCAAATTGATTCATCCCCTTCAAGGCAAGAACCTAAAAACTTCCTTGCCTTGGTACAATTTGACCCAATTAGCCAAACTGAATTGCCTGGTCAAGAAGATTCAATTCAGAAGGAATTTCAAGACCCTCTAATTGATCTTAACGCGTCCAGTGATGATGCATTCATCAAGCAAAAAAATGGGGCAGATGGCCCAAACCTATTCTCAGAAAGGAATAAAGTTCCTGAGGAGTGCCAAAGAAATATTCAAGAAATGCATTTGCGAAGTGAAAAGCAGTTGAGTGACTTAGAACTTAAAGTAGACAACGCAAATGAAAAATCTGAGGCACGAATAGAATAA

Protein sequence

MQIDSSPSRQEPKNFLALVQFDPISQTELPGQEDSIQKEFQDPLIDLNASSDDAFIKQKNGADGPNLFSERNKVPEECQRNIQEMHLRSEKQLSDLELKVDNANEKSEARIE*
Homology
[Close]
BLAST of CsaV3_2G010050 vs. NCBI nr
Match: KAE8651723.1 (hypothetical protein Csa_006188 [Cucumis sativus])

HSP 1 Score: 218.0 bits (554), Expect = 4.1e-53
Identity = 112/112 (100.00%), Postives = 112/112 (100.00%), Query Frame = 0 

Query: 1   MQIDSSPSRQEPKNFLALVQFDPISQTELPGQEDSIQKEFQDPLIDLNASSDDAFIKQKN 60
           MQIDSSPSRQEPKNFLALVQFDPISQTELPGQEDSIQKEFQDPLIDLNASSDDAFIKQKN
Sbjct: 1   MQIDSSPSRQEPKNFLALVQFDPISQTELPGQEDSIQKEFQDPLIDLNASSDDAFIKQKN 60

Query: 61  GADGPNLFSERNKVPEECQRNIQEMHLRSEKQLSDLELKVDNANEKSEARIE 113
           GADGPNLFSERNKVPEECQRNIQEMHLRSEKQLSDLELKVDNANEKSEARIE
Sbjct: 61  GADGPNLFSERNKVPEECQRNIQEMHLRSEKQLSDLELKVDNANEKSEARIE 112

[Close]
BLAST of CsaV3_2G010050 vs. ExPASy TrEMBL
Match: A0A0A0LHN2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G079110 PE=4 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 4.6e-34
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 0 

Query: 1  MQIDSSPSRQEPKNFLALVQFDPISQTELPGQEDSIQKEFQDPLIDLNASSDDAFIKQKN 60
          MQIDSSPSRQEPKNFLALVQFDPISQTELPGQEDSIQKEFQDPLIDLNASSDDAFIKQKN
Sbjct: 1  MQIDSSPSRQEPKNFLALVQFDPISQTELPGQEDSIQKEFQDPLIDLNASSDDAFIKQKN 60

Query: 61 GADGPNLFSERNKVPEE 78
          GADGPNLFSERNKVPEE
Sbjct: 61 GADGPNLFSERNKVPEE 77

The following BLAST results are available for this feature:
BLAST of CsaV3_2G010050 vs. NCBI nr
Match NameE-valueIdentityDescription
KAE8651723.14.1e-53100.00hypothetical protein Csa_006188 [Cucumis sativus][more]
BLAST of CsaV3_2G010050 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_2G010050 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LHN24.6e-34100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G079110 PE=4 SV=1[more]
BLAST of CsaV3_2G010050 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 86..106

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_2G010050.1CsaV3_2G010050.1mRNA