CsaV3_2G009330 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_2G009330
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Locationchr2: 5829460 .. 5829723 (+)
RNA-Seq ExpressionCsaV3_2G009330
SyntenyCsaV3_2G009330
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATAAGTTATAATACTCAGAAGGATAAGTGGAGTACTAATAAGCTTAGCTCACAATGTGCGCAGGAAGAAGATAAGATTAAGAGAGAAAGGACTGAAAGTGCTCACTTCTCAACTAACTATCATGGTAAGAATAAAAGAAAACATACAGATGTTGTAGAAGGGAAATCTCAGTTAAATAAGAAACAAGCTATAGAGAATCCTTGTTTTTTCTACAAAAAGAAAGGTCATCTCAAGAAAGATTGTTCCATGTACGCCAAATGGCAT

mRNA sequence

ATAAGTTATAATACTCAGAAGGATAAGTGGAGTACTAATAAGCTTAGCTCACAATGTGCGCAGGAAGAAGATAAGATTAAGAGAGAAAGGACTGAAAGTGCTCACTTCTCAACTAACTATCATGGTAAGAATAAAAGAAAACATACAGATGTTGTAGAAGGGAAATCTCAGTTAAATAAGAAACAAGCTATAGAGAATCCTTGTTTTTTCTACAAAAAGAAAGGTCATCTCAAGAAAGATTGTTCCATGTACGCCAAATGGCAT

Coding sequence (CDS)

ATAAGTTATAATACTCAGAAGGATAAGTGGAGTACTAATAAGCTTAGCTCACAATGTGCGCAGGAAGAAGATAAGATTAAGAGAGAAAGGACTGAAAGTGCTCACTTCTCAACTAACTATCATGGTAAGAATAAAAGAAAACATACAGATGTTGTAGAAGGGAAATCTCAGTTAAATAAGAAACAAGCTATAGAGAATCCTTGTTTTTTCTACAAAAAGAAAGGTCATCTCAAGAAAGATTGTTCCATGTACGCCAAATGGCAT

Protein sequence

ISYNTQKDKWSTNKLSSQCAQEEDKIKRERTESAHFSTNYHGKNKRKHTDVVEGKSQLNKKQAIENPCFFYKKKGHLKKDCSMYAKWH
Homology
BLAST of CsaV3_2G009330 vs. NCBI nr
Match: KAE8651698.1 (hypothetical protein Csa_006152, partial [Cucumis sativus])

HSP 1 Score: 183.0 bits (463), Expect = 1.2e-42
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 0

Query: 1  ISYNTQKDKWSTNKLSSQCAQEEDKIKRERTESAHFSTNYHGKNKRKHTDVVEGKSQLNK 60
          ISYNTQKDKWSTNKLSSQCAQEEDKIKRERTESAHFSTNYHGKNKRKHTDVVEGKSQLNK
Sbjct: 1  ISYNTQKDKWSTNKLSSQCAQEEDKIKRERTESAHFSTNYHGKNKRKHTDVVEGKSQLNK 60

Query: 61 KQAIENPCFFYKKKGHLKKDCSMYAKWH 89
          KQAIENPCFFYKKKGHLKKDCSMYAKWH
Sbjct: 61 KQAIENPCFFYKKKGHLKKDCSMYAKWH 88

BLAST of CsaV3_2G009330 vs. NCBI nr
Match: KAA0055452.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa] >TYK08934.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 133.3 bits (334), Expect = 1.0e-27
Identity = 63/87 (72.41%), Postives = 72/87 (82.76%), Query Frame = 0

Query: 1   ISYNTQKDKWSTNKLSSQCAQEEDKIKRERTESAHFSTNYHGKNKRKHTDVVEGKSQLNK 60
           ISYNTQKDKWS N+L SQC QEE +IKRE  E+ H +TN+HGK KRK TD VEG SQ NK
Sbjct: 52  ISYNTQKDKWSINELISQCVQEEYRIKREMIENVHLATNFHGKKKRKPTDAVEGTSQQNK 111

Query: 61  KQAIENPCFFYKKKGHLKKDCSMYAKW 88
           KQA++NPCFFYKKKGH+KK+C  YAKW
Sbjct: 112 KQAMKNPCFFYKKKGHIKKNCPKYAKW 138

BLAST of CsaV3_2G009330 vs. NCBI nr
Match: TYK01053.1 (retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 106.7 bits (265), Expect = 1.0e-19
Identity = 51/67 (76.12%), Postives = 55/67 (82.09%), Query Frame = 0

Query: 21  QEEDKIKRERTESAHFSTNYHGKNKRKHTDVVEGKSQLNKKQAIENPCFFYKKKGHLKKD 80
           QEED+IKRE  ESAH +TN+HGK KR+ TD VEG SQ NKKQ IENPCFF KKKGHLKKD
Sbjct: 54  QEEDRIKRETIESAHLATNFHGKKKRRPTDAVEGTSQQNKKQTIENPCFFCKKKGHLKKD 113

Query: 81  CSMYAKW 88
           C  YAKW
Sbjct: 114 CPKYAKW 120

BLAST of CsaV3_2G009330 vs. NCBI nr
Match: KAA0047806.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 106.3 bits (264), Expect = 1.4e-19
Identity = 51/67 (76.12%), Postives = 56/67 (83.58%), Query Frame = 0

Query: 21 QEEDKIKRERTESAHFSTNYHGKNKRKHTDVVEGKSQLNKKQAIENPCFFYKKKGHLKKD 80
          QEED+IKRE  ESAH +TN+HGK KR+ TDVVEG SQ NKKQ IENPCFF+KKKGHLKK 
Sbjct: 23 QEEDRIKRETIESAHLTTNFHGKKKRRPTDVVEGTSQQNKKQTIENPCFFWKKKGHLKKY 82

Query: 81 CSMYAKW 88
          C  YAKW
Sbjct: 83 CPKYAKW 89

BLAST of CsaV3_2G009330 vs. NCBI nr
Match: TYK29712.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 105.5 bits (262), Expect = 2.3e-19
Identity = 50/61 (81.97%), Postives = 54/61 (88.52%), Query Frame = 0

Query: 24 DKIKRERTESAHFSTNYHGKNKRKHTDVVEGKSQLNKKQAIENPCFFYKKKGHLKKDCSM 83
          D+IKRERTESAH +TN+HGK KRK TDVVEG SQ NKKQA+ENPCFFYKKKGHLKKDC  
Sbjct: 21 DRIKRERTESAHLATNFHGKKKRKSTDVVEGTSQQNKKQAMENPCFFYKKKGHLKKDCPK 80

Query: 84 Y 85
          Y
Sbjct: 81 Y 81

BLAST of CsaV3_2G009330 vs. ExPASy TrEMBL
Match: A0A5D3CCH9 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold314G00220 PE=4 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 5.1e-28
Identity = 63/87 (72.41%), Postives = 72/87 (82.76%), Query Frame = 0

Query: 1   ISYNTQKDKWSTNKLSSQCAQEEDKIKRERTESAHFSTNYHGKNKRKHTDVVEGKSQLNK 60
           ISYNTQKDKWS N+L SQC QEE +IKRE  E+ H +TN+HGK KRK TD VEG SQ NK
Sbjct: 52  ISYNTQKDKWSINELISQCVQEEYRIKREMIENVHLATNFHGKKKRKPTDAVEGTSQQNK 111

Query: 61  KQAIENPCFFYKKKGHLKKDCSMYAKW 88
           KQA++NPCFFYKKKGH+KK+C  YAKW
Sbjct: 112 KQAMKNPCFFYKKKGHIKKNCPKYAKW 138

BLAST of CsaV3_2G009330 vs. ExPASy TrEMBL
Match: A0A5D3BMQ8 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold264G00660 PE=4 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 5.1e-20
Identity = 51/67 (76.12%), Postives = 55/67 (82.09%), Query Frame = 0

Query: 21  QEEDKIKRERTESAHFSTNYHGKNKRKHTDVVEGKSQLNKKQAIENPCFFYKKKGHLKKD 80
           QEED+IKRE  ESAH +TN+HGK KR+ TD VEG SQ NKKQ IENPCFF KKKGHLKKD
Sbjct: 54  QEEDRIKRETIESAHLATNFHGKKKRRPTDAVEGTSQQNKKQTIENPCFFCKKKGHLKKD 113

Query: 81  CSMYAKW 88
           C  YAKW
Sbjct: 114 CPKYAKW 120

BLAST of CsaV3_2G009330 vs. ExPASy TrEMBL
Match: A0A5A7U0P4 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold133G00520 PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 6.6e-20
Identity = 51/67 (76.12%), Postives = 56/67 (83.58%), Query Frame = 0

Query: 21 QEEDKIKRERTESAHFSTNYHGKNKRKHTDVVEGKSQLNKKQAIENPCFFYKKKGHLKKD 80
          QEED+IKRE  ESAH +TN+HGK KR+ TDVVEG SQ NKKQ IENPCFF+KKKGHLKK 
Sbjct: 23 QEEDRIKRETIESAHLTTNFHGKKKRRPTDVVEGTSQQNKKQTIENPCFFWKKKGHLKKY 82

Query: 81 CSMYAKW 88
          C  YAKW
Sbjct: 83 CPKYAKW 89

BLAST of CsaV3_2G009330 vs. ExPASy TrEMBL
Match: A0A5D3E1F5 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold3607G00230 PE=4 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 1.1e-19
Identity = 50/61 (81.97%), Postives = 54/61 (88.52%), Query Frame = 0

Query: 24 DKIKRERTESAHFSTNYHGKNKRKHTDVVEGKSQLNKKQAIENPCFFYKKKGHLKKDCSM 83
          D+IKRERTESAH +TN+HGK KRK TDVVEG SQ NKKQA+ENPCFFYKKKGHLKKDC  
Sbjct: 21 DRIKRERTESAHLATNFHGKKKRKSTDVVEGTSQQNKKQAMENPCFFYKKKGHLKKDCPK 80

Query: 84 Y 85
          Y
Sbjct: 81 Y 81

BLAST of CsaV3_2G009330 vs. ExPASy TrEMBL
Match: A0A5A7UB53 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold751G00010 PE=4 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 1.9e-19
Identity = 49/66 (74.24%), Postives = 55/66 (83.33%), Query Frame = 0

Query: 22 EEDKIKRERTESAHFSTNYHGKNKRKHTDVVEGKSQLNKKQAIENPCFFYKKKGHLKKDC 81
          EED+IKRERTESAH + N+H K KRK T+ VEG SQ NKKQA+ENPCFFYKKKGHLKK+C
Sbjct: 21 EEDRIKRERTESAHLAINFHAKKKRKPTNAVEGTSQQNKKQAMENPCFFYKKKGHLKKNC 80

Query: 82 SMYAKW 88
            Y KW
Sbjct: 81 PKYTKW 86

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAE8651698.11.2e-42100.00hypothetical protein Csa_006152, partial [Cucumis sativus][more]
KAA0055452.11.0e-2772.41Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m... [more]
TYK01053.11.0e-1976.12retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m... [more]
KAA0047806.11.4e-1976.12Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m... [more]
TYK29712.12.3e-1981.97Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3CCH95.1e-2872.41Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var.... [more]
A0A5D3BMQ85.1e-2076.12Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var.... [more]
A0A5A7U0P46.6e-2076.12Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var.... [more]
A0A5D3E1F51.1e-1981.97Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var.... [more]
A0A5A7UB531.9e-1974.24Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var.... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 12..32
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..48
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..19
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 20..36

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_2G009330.1CsaV3_2G009330.1mRNA