CsaV3_2G009330 (gene) Cucumber (Chinese Long) v3
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATAAGTTATAATACTCAGAAGGATAAGTGGAGTACTAATAAGCTTAGCTCACAATGTGCGCAGGAAGAAGATAAGATTAAGAGAGAAAGGACTGAAAGTGCTCACTTCTCAACTAACTATCATGGTAAGAATAAAAGAAAACATACAGATGTTGTAGAAGGGAAATCTCAGTTAAATAAGAAACAAGCTATAGAGAATCCTTGTTTTTTCTACAAAAAGAAAGGTCATCTCAAGAAAGATTGTTCCATGTACGCCAAATGGCAT ATAAGTTATAATACTCAGAAGGATAAGTGGAGTACTAATAAGCTTAGCTCACAATGTGCGCAGGAAGAAGATAAGATTAAGAGAGAAAGGACTGAAAGTGCTCACTTCTCAACTAACTATCATGGTAAGAATAAAAGAAAACATACAGATGTTGTAGAAGGGAAATCTCAGTTAAATAAGAAACAAGCTATAGAGAATCCTTGTTTTTTCTACAAAAAGAAAGGTCATCTCAAGAAAGATTGTTCCATGTACGCCAAATGGCAT ATAAGTTATAATACTCAGAAGGATAAGTGGAGTACTAATAAGCTTAGCTCACAATGTGCGCAGGAAGAAGATAAGATTAAGAGAGAAAGGACTGAAAGTGCTCACTTCTCAACTAACTATCATGGTAAGAATAAAAGAAAACATACAGATGTTGTAGAAGGGAAATCTCAGTTAAATAAGAAACAAGCTATAGAGAATCCTTGTTTTTTCTACAAAAAGAAAGGTCATCTCAAGAAAGATTGTTCCATGTACGCCAAATGGCAT ISYNTQKDKWSTNKLSSQCAQEEDKIKRERTESAHFSTNYHGKNKRKHTDVVEGKSQLNKKQAIENPCFFYKKKGHLKKDCSMYAKWH Homology
BLAST of CsaV3_2G009330 vs. NCBI nr
Match: KAE8651698.1 (hypothetical protein Csa_006152, partial [Cucumis sativus]) HSP 1 Score: 183.0 bits (463), Expect = 1.2e-42 Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 0
BLAST of CsaV3_2G009330 vs. NCBI nr
Match: KAA0055452.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa] >TYK08934.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]) HSP 1 Score: 133.3 bits (334), Expect = 1.0e-27 Identity = 63/87 (72.41%), Postives = 72/87 (82.76%), Query Frame = 0
BLAST of CsaV3_2G009330 vs. NCBI nr
Match: TYK01053.1 (retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]) HSP 1 Score: 106.7 bits (265), Expect = 1.0e-19 Identity = 51/67 (76.12%), Postives = 55/67 (82.09%), Query Frame = 0
BLAST of CsaV3_2G009330 vs. NCBI nr
Match: KAA0047806.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]) HSP 1 Score: 106.3 bits (264), Expect = 1.4e-19 Identity = 51/67 (76.12%), Postives = 56/67 (83.58%), Query Frame = 0
BLAST of CsaV3_2G009330 vs. NCBI nr
Match: TYK29712.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]) HSP 1 Score: 105.5 bits (262), Expect = 2.3e-19 Identity = 50/61 (81.97%), Postives = 54/61 (88.52%), Query Frame = 0
BLAST of CsaV3_2G009330 vs. ExPASy TrEMBL
Match: A0A5D3CCH9 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold314G00220 PE=4 SV=1) HSP 1 Score: 133.3 bits (334), Expect = 5.1e-28 Identity = 63/87 (72.41%), Postives = 72/87 (82.76%), Query Frame = 0
BLAST of CsaV3_2G009330 vs. ExPASy TrEMBL
Match: A0A5D3BMQ8 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold264G00660 PE=4 SV=1) HSP 1 Score: 106.7 bits (265), Expect = 5.1e-20 Identity = 51/67 (76.12%), Postives = 55/67 (82.09%), Query Frame = 0
BLAST of CsaV3_2G009330 vs. ExPASy TrEMBL
Match: A0A5A7U0P4 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold133G00520 PE=4 SV=1) HSP 1 Score: 106.3 bits (264), Expect = 6.6e-20 Identity = 51/67 (76.12%), Postives = 56/67 (83.58%), Query Frame = 0
BLAST of CsaV3_2G009330 vs. ExPASy TrEMBL
Match: A0A5D3E1F5 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold3607G00230 PE=4 SV=1) HSP 1 Score: 105.5 bits (262), Expect = 1.1e-19 Identity = 50/61 (81.97%), Postives = 54/61 (88.52%), Query Frame = 0
BLAST of CsaV3_2G009330 vs. ExPASy TrEMBL
Match: A0A5A7UB53 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold751G00010 PE=4 SV=1) HSP 1 Score: 104.8 bits (260), Expect = 1.9e-19 Identity = 49/66 (74.24%), Postives = 55/66 (83.33%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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