CsaV3_2G009310 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_2G009310
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr2: 5819426 .. 5819923 (+)
RNA-Seq ExpressionCsaV3_2G009310
SyntenyCsaV3_2G009310
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GAAGAGACGCTTTAAATACACTTTCACATTTTGTAGAACACATCCTTCATAATCAATAATCTCATCGAAGCATAAGGATCCAAATCGTCTCAGAGACATGGCAACCCAAAAGCTTGCTACAATATCAATTGTTGTTTTGATGATATTCGCATGTATTGCATCAACAAGTATGCTCTTTAACTCATAAGTACTCTAATTCCATACAACTATTTTTGCTAGAACAATATTTTATACCATGTTATCTTTGTTAATATGGCAGCAAAAGGAGACGTTTTGAATGTGCATTGTGTTCGACCATGCTCTGATACTTATGACGACGAGTCGTGTTATAATGATTGCATTCAAGAGAATCTTGGTGCTGGATTTTGTTACCCGAAACTACCTAGCACCGATAAAGATTGTTGTTGCAATGTTTGACAATAATTGATTGCGTAACATTTTATTGAAACTTATAAATAAAATTTAATATTTTACAATATCTCTTTCATTCATCTGACC

mRNA sequence

ATGGCAACCCAAAAGCTTGCTACAATATCAATTGTTGTTTTGATGATATTCGCATGTATTGCATCAACAACAAAAGGAGACGTTTTGAATGTGCATTGTGTTCGACCATGCTCTGATACTTATGACGACGAGTCGTGTTATAATGATTGCATTCAAGAGAATCTTGGTGCTGGATTTTGTTACCCGAAACTACCTAGCACCGATAAAGATTGTTGTTGCAATGTTTGA

Coding sequence (CDS)

ATGGCAACCCAAAAGCTTGCTACAATATCAATTGTTGTTTTGATGATATTCGCATGTATTGCATCAACAACAAAAGGAGACGTTTTGAATGTGCATTGTGTTCGACCATGCTCTGATACTTATGACGACGAGTCGTGTTATAATGATTGCATTCAAGAGAATCTTGGTGCTGGATTTTGTTACCCGAAACTACCTAGCACCGATAAAGATTGTTGTTGCAATGTTTGA

Protein sequence

MATQKLATISIVVLMIFACIASTTKGDVLNVHCVRPCSDTYDDESCYNDCIQENLGAGFCYPKLPSTDKDCCCNV*
Homology
BLAST of CsaV3_2G009310 vs. NCBI nr
Match: KGN61228.1 (hypothetical protein Csa_006463 [Cucumis sativus])

HSP 1 Score: 162.2 bits (409), Expect = 1.8e-36
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 0

Query: 1  MATQKLATISIVVLMIFACIASTTKGDVLNVHCVRPCSDTYDDESCYNDCIQENLGAGFC 60
          MATQKLATISIVVLMIFACIASTTKGDVLNVHCVRPCSDTYDDESCYNDCIQENLGAGFC
Sbjct: 1  MATQKLATISIVVLMIFACIASTTKGDVLNVHCVRPCSDTYDDESCYNDCIQENLGAGFC 60

Query: 61 YPKLPSTDKDCCCNV 76
          YPKLPSTDKDCCCNV
Sbjct: 61 YPKLPSTDKDCCCNV 75

BLAST of CsaV3_2G009310 vs. NCBI nr
Match: KAE8651697.1 (hypothetical protein Csa_006343 [Cucumis sativus])

HSP 1 Score: 152.5 bits (384), Expect = 1.4e-33
Identity = 69/75 (92.00%), Postives = 73/75 (97.33%), Query Frame = 0

Query: 1  MATQKLATISIVVLMIFACIASTTKGDVLNVHCVRPCSDTYDDESCYNDCIQENLGAGFC 60
          MATQKLAT+SIV+LMI ACI STTKGDVLNV+CVRPCSDTYDDESCYNDCI+ENLGAGFC
Sbjct: 1  MATQKLATVSIVMLMILACIVSTTKGDVLNVNCVRPCSDTYDDESCYNDCIRENLGAGFC 60

Query: 61 YPKLPSTDKDCCCNV 76
          YPKLPSTDKDCCCNV
Sbjct: 61 YPKLPSTDKDCCCNV 75

BLAST of CsaV3_2G009310 vs. NCBI nr
Match: KAE8651701.1 (hypothetical protein Csa_006400, partial [Cucumis sativus])

HSP 1 Score: 115.5 bits (288), Expect = 1.9e-22
Identity = 46/50 (92.00%), Postives = 50/50 (100.00%), Query Frame = 0

Query: 25 KGDVLNVHCVRPCSDTYDDESCYNDCIQENLGAGFCYPKLPSTDKDCCCN 75
          KGDVLN+HCV+PCSDTYDDESCYNDCI+ENLGAGFCYPKLPSTDKDCCC+
Sbjct: 15 KGDVLNMHCVQPCSDTYDDESCYNDCIKENLGAGFCYPKLPSTDKDCCCS 64

BLAST of CsaV3_2G009310 vs. NCBI nr
Match: KAG6586428.1 (hypothetical protein SDJN03_19161, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 94.4 bits (233), Expect = 4.6e-16
Identity = 43/76 (56.58%), Postives = 59/76 (77.63%), Query Frame = 0

Query: 1  MATQKLATISIVVLMIFACIASTTKGDVLNVHCVRPCSDTYDDESCYNDCIQENLGAGFC 60
          MA++KL T+  +V+M+F   AS+ KGD+  + C+RPC D +DD+SCY+DC++ N GAGFC
Sbjct: 1  MASRKLFTVFAIVMMMF-YFASSAKGDMF-MECIRPCVDAFDDDSCYDDCVRANKGAGFC 60

Query: 61 YPKLPS--TDKDCCCN 75
          YPKLPS   +KDCCCN
Sbjct: 61 YPKLPSVTNEKDCCCN 74

BLAST of CsaV3_2G009310 vs. NCBI nr
Match: KGN54497.1 (hypothetical protein Csa_012842 [Cucumis sativus])

HSP 1 Score: 71.2 bits (173), Expect = 4.2e-09
Identity = 38/76 (50.00%), Postives = 50/76 (65.79%), Query Frame = 0

Query: 1  MATQKLATISIVVLMIFACIASTTKGDVLNVHCVRPCSDTYDDESCYNDCIQENLGAGFC 60
          M TQKL  +S++V + F+C AS+ +GD L  +CV PCS+   D  C   CI+++ GAGFC
Sbjct: 1  MVTQKLFIVSMLVAVTFSCFASSMEGDDL-WNCVIPCSNNNGDILCNTACIEQDEGAGFC 60

Query: 61 YPKLP--STDKDCCCN 75
           PKLP  S  K CCCN
Sbjct: 61 VPKLPGISDMKVCCCN 75

BLAST of CsaV3_2G009310 vs. ExPASy TrEMBL
Match: A0A0A0LHG9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G071930 PE=4 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 8.8e-37
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 0

Query: 1  MATQKLATISIVVLMIFACIASTTKGDVLNVHCVRPCSDTYDDESCYNDCIQENLGAGFC 60
          MATQKLATISIVVLMIFACIASTTKGDVLNVHCVRPCSDTYDDESCYNDCIQENLGAGFC
Sbjct: 1  MATQKLATISIVVLMIFACIASTTKGDVLNVHCVRPCSDTYDDESCYNDCIQENLGAGFC 60

Query: 61 YPKLPSTDKDCCCNV 76
          YPKLPSTDKDCCCNV
Sbjct: 61 YPKLPSTDKDCCCNV 75

BLAST of CsaV3_2G009310 vs. ExPASy TrEMBL
Match: A0A0A0LJG5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G072430 PE=4 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 1.6e-33
Identity = 69/74 (93.24%), Postives = 71/74 (95.95%), Query Frame = 0

Query: 1  MATQKLATISIVVLMIFACIASTTKGDVLNVHCVRPCSDTYDDESCYNDCIQENLGAGFC 60
          MATQKLATISIVVL+IF CI STTKGDVLNVHCVRPC DTYDDESCYNDCI+ENLGAGFC
Sbjct: 1  MATQKLATISIVVLVIFPCIVSTTKGDVLNVHCVRPCYDTYDDESCYNDCIRENLGAGFC 60

Query: 61 YPKLPSTDKDCCCN 75
          YPKLPSTDKDCCCN
Sbjct: 61 YPKLPSTDKDCCCN 74

BLAST of CsaV3_2G009310 vs. ExPASy TrEMBL
Match: A0A0A0LKF5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G070930 PE=4 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 4.5e-25
Identity = 50/53 (94.34%), Postives = 52/53 (98.11%), Query Frame = 0

Query: 23 TTKGDVLNVHCVRPCSDTYDDESCYNDCIQENLGAGFCYPKLPSTDKDCCCNV 76
          T KGD+LNVHCVRPCSDTYDDESCYNDCI+ENLGAGFCYPKLPSTDKDCCCNV
Sbjct: 2  TAKGDILNVHCVRPCSDTYDDESCYNDCIRENLGAGFCYPKLPSTDKDCCCNV 54

BLAST of CsaV3_2G009310 vs. ExPASy TrEMBL
Match: A0A0A0L1R8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G339000 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 2.0e-09
Identity = 38/76 (50.00%), Postives = 50/76 (65.79%), Query Frame = 0

Query: 1  MATQKLATISIVVLMIFACIASTTKGDVLNVHCVRPCSDTYDDESCYNDCIQENLGAGFC 60
          M TQKL  +S++V + F+C AS+ +GD L  +CV PCS+   D  C   CI+++ GAGFC
Sbjct: 1  MVTQKLFIVSMLVAVTFSCFASSMEGDDL-WNCVIPCSNNNGDILCNTACIEQDEGAGFC 60

Query: 61 YPKLP--STDKDCCCN 75
           PKLP  S  K CCCN
Sbjct: 61 VPKLPGISDMKVCCCN 75

BLAST of CsaV3_2G009310 vs. ExPASy TrEMBL
Match: A0A5A7TJH1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1167G00010 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 1.9e-07
Identity = 30/73 (41.10%), Postives = 44/73 (60.27%), Query Frame = 0

Query: 1  MATQKLATISIVVLMIFACIASTTKGDVLNVHCVRPCSDTYDDESCYNDCIQENLGAGFC 60
          M T+KL  + + + ++ AC  + ++G  L  +C+RPCS+TY   SCY DC   N G G C
Sbjct: 1  MPTRKLLVVFVAITVLLACFVTLSEGQGL-WNCIRPCSETYKSLSCYVDCGALNKGTGAC 60

Query: 61 YPKLPSTDKDCCC 74
           PK P +D+  CC
Sbjct: 61 IPKRPVSDEYVCC 72

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KGN61228.11.8e-36100.00hypothetical protein Csa_006463 [Cucumis sativus][more]
KAE8651697.11.4e-3392.00hypothetical protein Csa_006343 [Cucumis sativus][more]
KAE8651701.11.9e-2292.00hypothetical protein Csa_006400, partial [Cucumis sativus][more]
KAG6586428.14.6e-1656.58hypothetical protein SDJN03_19161, partial [Cucurbita argyrosperma subsp. sorori... [more]
KGN54497.14.2e-0950.00hypothetical protein Csa_012842 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LHG98.8e-37100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G071930 PE=4 SV=1[more]
A0A0A0LJG51.6e-3393.24Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G072430 PE=4 SV=1[more]
A0A0A0LKF54.5e-2594.34Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G070930 PE=4 SV=1[more]
A0A0A0L1R82.0e-0950.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G339000 PE=4 SV=1[more]
A0A5A7TJH11.9e-0741.10Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePROSITEPS51257PROKAR_LIPOPROTEINcoord: 1..19
score: 5.0

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_2G009310.1CsaV3_2G009310.1mRNA