CsaV3_2G009020 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_2G009020
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr2: 5467313 .. 5467513 (-)
RNA-Seq ExpressionCsaV3_2G009020
SyntenyCsaV3_2G009020
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAATGCGTTGATTTCAAGGAAGTAGGCAGGTGGGGGATGGAAAATGCGGAAGCACCAAGGAAAATGGAAGGTGGGTGTGGGAATTTTGGTGTTGAAATGATAGGTAAGGCCTCGGGAAAAGGGAAAGGAGAAGAGGGAGAAAGAATTGTGCAGATAGACGTTGTGAAGAGAAGGAAGAAGAAGAAGAAGGTGGATTGA

mRNA sequence

ATGAAATGCGTTGATTTCAAGGAAGTAGGCAGGTGGGGGATGGAAAATGCGGAAGCACCAAGGAAAATGGAAGGTGGGTGTGGGAATTTTGGTGTTGAAATGATAGGTAAGGCCTCGGGAAAAGGGAAAGGAGAAGAGGGAGAAAGAATTGTGCAGATAGACGTTGTGAAGAGAAGGAAGAAGAAGAAGAAGGTGGATTGA

Coding sequence (CDS)

ATGAAATGCGTTGATTTCAAGGAAGTAGGCAGGTGGGGGATGGAAAATGCGGAAGCACCAAGGAAAATGGAAGGTGGGTGTGGGAATTTTGGTGTTGAAATGATAGGTAAGGCCTCGGGAAAAGGGAAAGGAGAAGAGGGAGAAAGAATTGTGCAGATAGACGTTGTGAAGAGAAGGAAGAAGAAGAAGAAGGTGGATTGA

Protein sequence

MKCVDFKEVGRWGMENAEAPRKMEGGCGNFGVEMIGKASGKGKGEEGERIVQIDVVKRRKKKKKVD*
Homology
[Close]
BLAST of CsaV3_2G009020 vs. NCBI nr
Match: KGN61192.1 (hypothetical protein Csa_006000 [Cucumis sativus])

HSP 1 Score: 134.4 bits (337), Expect = 3.6e-28
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 0 

Query: 1  MKCVDFKEVGRWGMENAEAPRKMEGGCGNFGVEMIGKASGKGKGEEGERIVQIDVVKRRK 60
          MKCVDFKEVGRWGMENAEAPRKMEGGCGNFGVEMIGKASGKGKGEEGERIVQIDVVKRRK
Sbjct: 1  MKCVDFKEVGRWGMENAEAPRKMEGGCGNFGVEMIGKASGKGKGEEGERIVQIDVVKRRK 60

Query: 61 KKKKVD 67
          KKKKVD
Sbjct: 61 KKKKVD 66

[Close]
BLAST of CsaV3_2G009020 vs. NCBI nr
Match: KAA0047568.1 (hypothetical protein E6C27_scaffold115G00300 [Cucumis melo var. makuwa] >TYK14962.1 hypothetical protein E5676_scaffold2754G00120 [Cucumis melo var. makuwa])

HSP 1 Score: 119.4 bits (298), Expect = 1.2e-23
Identity = 59/63 (93.65%), Postives = 60/63 (95.24%), Query Frame = 0 

Query: 1  MKCVDFKEVGRWGMENAEAPRKMEGGCGNFGVEMIGKASGKGKGEEGERIVQIDVVKRRK 60
          MKCVDFK VGRWGMENAE  RKMEGGCGNFGVEM+GKASGKGKGEEGERIVQIDVVKRRK
Sbjct: 1  MKCVDFKGVGRWGMENAEELRKMEGGCGNFGVEMMGKASGKGKGEEGERIVQIDVVKRRK 60

Query: 61 KKK 64
          KKK
Sbjct: 61 KKK 63

[Close]
BLAST of CsaV3_2G009020 vs. ExPASy TrEMBL
Match: A0A0A0LKD2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G062670 PE=4 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 1.7e-28
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 0 

Query: 1  MKCVDFKEVGRWGMENAEAPRKMEGGCGNFGVEMIGKASGKGKGEEGERIVQIDVVKRRK 60
          MKCVDFKEVGRWGMENAEAPRKMEGGCGNFGVEMIGKASGKGKGEEGERIVQIDVVKRRK
Sbjct: 1  MKCVDFKEVGRWGMENAEAPRKMEGGCGNFGVEMIGKASGKGKGEEGERIVQIDVVKRRK 60

Query: 61 KKKKVD 67
          KKKKVD
Sbjct: 61 KKKKVD 66

[Close]
BLAST of CsaV3_2G009020 vs. ExPASy TrEMBL
Match: A0A5D3CU33 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2754G00120 PE=4 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 5.8e-24
Identity = 59/63 (93.65%), Postives = 60/63 (95.24%), Query Frame = 0 

Query: 1  MKCVDFKEVGRWGMENAEAPRKMEGGCGNFGVEMIGKASGKGKGEEGERIVQIDVVKRRK 60
          MKCVDFK VGRWGMENAE  RKMEGGCGNFGVEM+GKASGKGKGEEGERIVQIDVVKRRK
Sbjct: 1  MKCVDFKGVGRWGMENAEELRKMEGGCGNFGVEMMGKASGKGKGEEGERIVQIDVVKRRK 60

Query: 61 KKK 64
          KKK
Sbjct: 61 KKK 63

The following BLAST results are available for this feature:
BLAST of CsaV3_2G009020 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN61192.13.6e-28100.00hypothetical protein Csa_006000 [Cucumis sativus][more]
KAA0047568.11.2e-2393.65hypothetical protein E6C27_scaffold115G00300 [Cucumis melo var. makuwa] >TYK1496... [more]
BLAST of CsaV3_2G009020 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_2G009020 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LKD21.7e-28100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G062670 PE=4 SV=1[more]
A0A5D3CU335.8e-2493.65Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
BLAST of CsaV3_2G009020 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_2G009020.1CsaV3_2G009020.1mRNA