CsaV3_2G007180 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_2G007180
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	transcription factor bHLH149-like
Location	chr2: 3606325 .. 3607593 (+)
RNA-Seq Expression	CsaV3_2G007180
Synteny	CsaV3_2G007180

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CGAATCTCCACCGAGATATATTAAATATATATATATGAAAAAGGAAGTAGGAATTAAAGATAGATATATATATATATGTGTGTGTATATAAATGGGGAAGAGAAATGGGAAAGAAGAGAGAGAGGAAGAGAAAGGCAATTAAACGTGTTTGAAGGACTCAGAACGCGTGATTTTTCCCGTGATTCTTTTAAACCCTTTCTATCTTTCTCTCTAAAAACTCAACTCTTCATTCAAATCTCTTCAATTTTTCCATTTCTCAAAGGTATATTCATTCATTCATTCTTCTTCATTCAATCACTACTTCCTTGTTTTTGTCTGATGTAATTCATTTGTTTCTCTCTCGTCTTGCAGATTCTCACTCATTTCTCTCTGATTCAACGCTTTCTTCTACTATTCCATGGACGCCGATGATTCGAACAATTCCAAAACGTTGTTGCAGCACTCCAATAAGTGTCTACCTAAAATTCTAACCCCCGAACCTACTCAACACAGATGGAAAACTGAAATCCAGCAACAGATCTACTCATCCAGGCTCACCCAAGCGCTTCGCCGAGTCACTCATCCACGCTCCTCATCTCCGCTTAACGGAAACCTAGTTCGCCGAACTGCGGATTCTGTACTCGCCGCTACAGCCAAGGGGAGGACTCGATGGAGTCGAGCCATTCTAGCCACTCGATTCCGCCAGAGCCTTGCCAGACGACGACGGAGGACGAAGAAGAAATTGCTCGCTCGTAAACCGGAGCTCAAGACCGAGAAGGTTAGGAAGTTACCGGCGGTGCAGAGGAAGGTGAAAATTCTTGGCCGCTTGGTTCCTGGTTGTCGGAAACTCTCGTTCCCGAATCTTCTGGAAGAAGCGACGGATTATATATCGGCTTTAGAGATGCAGGTAAAAGCCATGACGGCGCTCGCTGAACTCCTCGCCGGAAATCAAAGGAATTTTGCCGGAATCTCGAACGATTCTTGAGATTGATAATCGTTCCGTAGATTCGGAAATCGGGATCGCCGCCGTGGTTTTCTTTTTCCTCTTTCTTTTTTCCTTATTCTCCAATTGATATATATATTTTTTTCCCGGCGGTAATATTATTTTTATTTGTTTTGTTTGTTTCCATATGTAATCTTATTGTATATTTTAAATTATAAATTTAGAGTCTAAATTTTGGTTGAAATTTTGATACTCTAATTTGATTTATCGCTTCATCTCTATTACACAATTATTAAACATAAATATTAACATTTTTAGGTTAAACTATAAAGTATTTTAGAATTTGA

mRNA sequence

ATGGACGCCGATGATTCGAACAATTCCAAAACGTTGTTGCAGCACTCCAATAAGTGTCTACCTAAAATTCTAACCCCCGAACCTACTCAACACAGATGGAAAACTGAAATCCAGCAACAGATCTACTCATCCAGGCTCACCCAAGCGCTTCGCCGAGTCACTCATCCACGCTCCTCATCTCCGCTTAACGGAAACCTAGTTCGCCGAACTGCGGATTCTGTACTCGCCGCTACAGCCAAGGGGAGGACTCGATGGAGTCGAGCCATTCTAGCCACTCGATTCCGCCAGAGCCTTGCCAGACGACGACGGAGGACGAAGAAGAAATTGCTCGCTCGTAAACCGGAGCTCAAGACCGAGAAGGTTAGGAAGTTACCGGCGGTGCAGAGGAAGGTGAAAATTCTTGGCCGCTTGGTTCCTGGTTGTCGGAAACTCTCGTTCCCGAATCTTCTGGAAGAAGCGACGGATTATATATCGGCTTTAGAGATGCAGGTAAAAGCCATGACGGCGCTCGCTGAACTCCTCGCCGGAAATCAAAGGAATTTTGCCGGAATCTCGAACGATTCTTGA

Coding sequence (CDS)

ATGGACGCCGATGATTCGAACAATTCCAAAACGTTGTTGCAGCACTCCAATAAGTGTCTACCTAAAATTCTAACCCCCGAACCTACTCAACACAGATGGAAAACTGAAATCCAGCAACAGATCTACTCATCCAGGCTCACCCAAGCGCTTCGCCGAGTCACTCATCCACGCTCCTCATCTCCGCTTAACGGAAACCTAGTTCGCCGAACTGCGGATTCTGTACTCGCCGCTACAGCCAAGGGGAGGACTCGATGGAGTCGAGCCATTCTAGCCACTCGATTCCGCCAGAGCCTTGCCAGACGACGACGGAGGACGAAGAAGAAATTGCTCGCTCGTAAACCGGAGCTCAAGACCGAGAAGGTTAGGAAGTTACCGGCGGTGCAGAGGAAGGTGAAAATTCTTGGCCGCTTGGTTCCTGGTTGTCGGAAACTCTCGTTCCCGAATCTTCTGGAAGAAGCGACGGATTATATATCGGCTTTAGAGATGCAGGTAAAAGCCATGACGGCGCTCGCTGAACTCCTCGCCGGAAATCAAAGGAATTTTGCCGGAATCTCGAACGATTCTTGA

Protein sequence

MDADDSNNSKTLLQHSNKCLPKILTPEPTQHRWKTEIQQQIYSSRLTQALRRVTHPRSSSPLNGNLVRRTADSVLAATAKGRTRWSRAILATRFRQSLARRRRRTKKKLLARKPELKTEKVRKLPAVQRKVKILGRLVPGCRKLSFPNLLEEATDYISALEMQVKAMTALAELLAGNQRNFAGISNDS*

Homology

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BLAST of CsaV3_2G007180 vs. NCBI nr
Match: XP_004144744.1 (transcription factor bHLH149 [Cucumis sativus] >KGN61009.1 hypothetical protein Csa_021144 [Cucumis sativus])

HSP 1 Score: 352.8 bits (904), Expect = 1.8e-93
Identity = 188/188 (100.00%), Postives = 188/188 (100.00%), Query Frame = 0


Query: 1   MDADDSNNSKTLLQHSNKCLPKILTPEPTQHRWKTEIQQQIYSSRLTQALRRVTHPRSSS 60
           MDADDSNNSKTLLQHSNKCLPKILTPEPTQHRWKTEIQQQIYSSRLTQALRRVTHPRSSS
Sbjct: 1   MDADDSNNSKTLLQHSNKCLPKILTPEPTQHRWKTEIQQQIYSSRLTQALRRVTHPRSSS 60

Query: 61  PLNGNLVRRTADSVLAATAKGRTRWSRAILATRFRQSLARRRRRTKKKLLARKPELKTEK 120
           PLNGNLVRRTADSVLAATAKGRTRWSRAILATRFRQSLARRRRRTKKKLLARKPELKTEK
Sbjct: 61  PLNGNLVRRTADSVLAATAKGRTRWSRAILATRFRQSLARRRRRTKKKLLARKPELKTEK 120

Query: 121 VRKLPAVQRKVKILGRLVPGCRKLSFPNLLEEATDYISALEMQVKAMTALAELLAGNQRN 180
           VRKLPAVQRKVKILGRLVPGCRKLSFPNLLEEATDYISALEMQVKAMTALAELLAGNQRN
Sbjct: 121 VRKLPAVQRKVKILGRLVPGCRKLSFPNLLEEATDYISALEMQVKAMTALAELLAGNQRN 180

Query: 181 FAGISNDS 189
           FAGISNDS
Sbjct: 181 FAGISNDS 188

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BLAST of CsaV3_2G007180 vs. NCBI nr
Match: XP_016903402.1 (PREDICTED: transcription factor bHLH149-like [Cucumis melo])

HSP 1 Score: 305.4 bits (781), Expect = 3.3e-79
Identity = 170/189 (89.95%), Postives = 175/189 (92.59%), Query Frame = 0


Query: 1   MDADDSNNSKTLLQH-SNKCLPKILTPEPTQHRWKTEIQQQIYSSRLTQALRRVTHPRSS 60
           MDAD SNNS TLL H +NK  PKILT EPTQH WKTEIQQQIYSSRL +ALRRVTHPRSS
Sbjct: 1   MDADQSNNSTTLLPHPANKRPPKILTAEPTQHTWKTEIQQQIYSSRLAEALRRVTHPRSS 60

Query: 61  SPLNGNLVRRTADSVLAATAKGRTRWSRAILATRFRQSLARRRRRTKKKLLARKPELKTE 120
           S +NGNLVR+TADSVLAATAKGR+RWSRAILATRFRQSLARRRRRT KKLLARKPELK E
Sbjct: 61  STINGNLVRQTADSVLAATAKGRSRWSRAILATRFRQSLARRRRRT-KKLLARKPELKNE 120

Query: 121 KVRKLPAVQRKVKILGRLVPGCRKLSFPNLLEEATDYISALEMQVKAMTALAELLAGNQR 180
           K RKLPAVQRKVKILGRLVPGCRKLSFPNLLEEATDYISALEMQVKAMTALAELLAGNQR
Sbjct: 121 KARKLPAVQRKVKILGRLVPGCRKLSFPNLLEEATDYISALEMQVKAMTALAELLAGNQR 180

Query: 181 NFAGISNDS 189
           N AGISNDS
Sbjct: 181 NIAGISNDS 188

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BLAST of CsaV3_2G007180 vs. NCBI nr
Match: KAA0048078.1 (transcription factor bHLH149-like protein [Cucumis melo var. makuwa] >TYJ96458.1 transcription factor bHLH149-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 304.7 bits (779), Expect = 5.6e-79
Identity = 169/189 (89.42%), Postives = 175/189 (92.59%), Query Frame = 0


Query: 1   MDADDSNNSKTLLQH-SNKCLPKILTPEPTQHRWKTEIQQQIYSSRLTQALRRVTHPRSS 60
           MDAD SNNS TLL H +NK  PKI+T EPTQH WKTEIQQQIYSSRL +ALRRVTHPRSS
Sbjct: 1   MDADQSNNSTTLLPHPANKRPPKIITDEPTQHTWKTEIQQQIYSSRLAEALRRVTHPRSS 60

Query: 61  SPLNGNLVRRTADSVLAATAKGRTRWSRAILATRFRQSLARRRRRTKKKLLARKPELKTE 120
           S +NGNLVR+TADSVLAATAKGR+RWSRAILATRFRQSLARRRRRT KKLLARKPELK E
Sbjct: 61  STINGNLVRQTADSVLAATAKGRSRWSRAILATRFRQSLARRRRRT-KKLLARKPELKNE 120

Query: 121 KVRKLPAVQRKVKILGRLVPGCRKLSFPNLLEEATDYISALEMQVKAMTALAELLAGNQR 180
           K RKLPAVQRKVKILGRLVPGCRKLSFPNLLEEATDYISALEMQVKAMTALAELLAGNQR
Sbjct: 121 KARKLPAVQRKVKILGRLVPGCRKLSFPNLLEEATDYISALEMQVKAMTALAELLAGNQR 180

Query: 181 NFAGISNDS 189
           N AGISNDS
Sbjct: 181 NIAGISNDS 188

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BLAST of CsaV3_2G007180 vs. NCBI nr
Match: XP_038890546.1 (transcription factor bHLH149 [Benincasa hispida])

HSP 1 Score: 237.7 bits (605), Expect = 8.5e-59
Identity = 141/198 (71.21%), Postives = 157/198 (79.29%), Query Frame = 0


Query: 1   MDADDSNNSKTLLQHSN--KCLPKILTPEPTQHRWKTEIQQQIYSSRLTQALRRVTHPRS 60
           MDA++S NS+ LL+  N  + +   +T E  + RW+TE++QQIYSSRL +ALRRV+  RS
Sbjct: 1   MDAEESKNSRRLLEQPNNRRKIVSDVTAEGREQRWRTEVEQQIYSSRLAEALRRVSRRRS 60

Query: 61  S----SPLNGNLVRRTADSVLAATAKGRTRWSRAILATRFRQSLARRRRRTKKKLLARKP 120
           S    SP+NG LVR TAD VLAATAKGRTRWSRAILA+RFRQ LARRRR   KKLL  KP
Sbjct: 61  SSYARSPINGRLVRETADCVLAATAKGRTRWSRAILASRFRQRLARRRR--TKKLLGCKP 120

Query: 121 ----ELKTEKVRKLPAVQRKVKILGRLVPGCRKLSFPNLLEEATDYISALEMQVKAMTAL 180
               E K EK+RKLPAVQRKVKILGRLVPGCRKLSFPNLLEEATDYISALEMQVKAM AL
Sbjct: 121 SRVAEAKNEKIRKLPAVQRKVKILGRLVPGCRKLSFPNLLEEATDYISALEMQVKAMAAL 180

Query: 181 AELLAGNQRNFAGISNDS 189
           AELLAG Q N  GISNDS
Sbjct: 181 AELLAGTQSNLLGISNDS 196

[Close]

BLAST of CsaV3_2G007180 vs. NCBI nr
Match: XP_022999326.1 (transcription factor bHLH149-like [Cucurbita maxima])

HSP 1 Score: 219.2 bits (557), Expect = 3.1e-53
Identity = 134/195 (68.72%), Postives = 149/195 (76.41%), Query Frame = 0


Query: 1   MDADDSNNSKTLLQHSNKCL--PKILTPEPTQHRWKTEIQQQIYSSRLTQALRRVTHPRS 60
           MDA++S NS+  LQ  NK L     ++ E  + RW+TE++QQIYSSRL +AL+RV+  RS
Sbjct: 1   MDAEESKNSRRSLQKPNKRLQIASNVSAEGRERRWRTEVEQQIYSSRLAEALQRVSRQRS 60

Query: 61  S----SPLNGNLVRRTADSVLAATAKGRTRWSRAILATRFRQSLARRRRRTKKKLLARKP 120
           S    S +NG LVR TAD VLAA AKGRTRWSRAILA RFRQ LARRRR   KK + RKP
Sbjct: 61  SPHARSTINGRLVRETADCVLAAAAKGRTRWSRAILANRFRQRLARRRR--TKKSIGRKP 120

Query: 121 ELKTE-KVRKLPAVQRKVKILGRLVPGCRKLSFPNLLEEATDYISALEMQVKAMTALAEL 180
               E K RKLPAVQRKVKILGRLVPGCRKLSFPNLLEEATDYISALEMQVKAM ALAE+
Sbjct: 121 SRVEEVKNRKLPAVQRKVKILGRLVPGCRKLSFPNLLEEATDYISALEMQVKAMAALAEI 180

Query: 181 LAGNQRNFAGISNDS 189
           LAG Q N   ISNDS
Sbjct: 181 LAGAQSNLLPISNDS 193

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BLAST of CsaV3_2G007180 vs. ExPASy Swiss-Prot
Match: O80482 (Transcription factor bHLH149 OS=Arabidopsis thaliana OX=3702 GN=BHLH149 PE=1 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 9.2e-32
Identity = 90/160 (56.25%), Postives = 111/160 (69.38%), Query Frame = 0


Query: 27  EPTQHRWKTEIQQQIYSSRLTQALRRVTHPRSSSPLNGNL----------VRRTADSVLA 86
           E +  RWKT   QQIY+ +L +ALRRV   RSS+  N             +R TAD VLA
Sbjct: 38  EESLKRWKTNRVQQIYACKLVEALRRV-RQRSSTTSNNETDKLVSGAAREIRDTADRVLA 97

Query: 87  ATAKGRTRWSRAILATRFRQSLARRRRRTKK--KLLARKPELKTEKVRKLPAVQRKVKIL 146
           A+A+G TRWSRAILA+R R  L + R+  K      +RK   +T ++ KLPAV+RK+KIL
Sbjct: 98  ASARGTTRWSRAILASRVRAKLKKHRKAKKSTGNCKSRKGLTETNRI-KLPAVERKLKIL 157

Query: 147 GRLVPGCRKLSFPNLLEEATDYISALEMQVKAMTALAELL 175
           GRLVPGCRK+S PNLL+EATDYI+ALEMQV+AM ALAELL
Sbjct: 158 GRLVPGCRKVSVPNLLDEATDYIAALEMQVRAMEALAELL 195

[Close]

BLAST of CsaV3_2G007180 vs. ExPASy Swiss-Prot
Match: Q9C8Z9 (Transcription factor bHLH148 OS=Arabidopsis thaliana OX=3702 GN=BHLH148 PE=1 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 1.2e-23
Identity = 76/166 (45.78%), Postives = 102/166 (61.45%), Query Frame = 0


Query: 32  RWKTEIQQQIYSSRLTQALRRV----THPRSSSPL---NGNLVRRTADSVLAATAKGRTR 91
           RW++E QQ+IYS++L QAL++V    +   SSSP     G  VR  AD  LA +A+GRT 
Sbjct: 47  RWRSEKQQRIYSAKLFQALQQVRLNSSASTSSSPTAQKRGKAVREAADRALAVSARGRTL 106

Query: 92  WSRAILATRFRQSLARRRRRTKKKLL-------------ARKPELKTEKVRK--LPAVQR 151
           WSRAILA R +    ++RR      +             +RK  +   ++ K  +P V R
Sbjct: 107 WSRAILANRIKLKFRKQRRPRATMAIPAMTTVVSSSSNRSRKRRVSVLRLNKKSIPDVNR 166

Query: 152 KVKILGRLVPGCRKLSFPNLLEEATDYISALEMQVKAMTALAELLA 176
           KV++LGRLVPGC K S P +LEEATDYI ALEMQV+AM +L +LL+
Sbjct: 167 KVRVLGRLVPGCGKQSVPVILEEATDYIQALEMQVRAMNSLVQLLS 212

[Close]

BLAST of CsaV3_2G007180 vs. ExPASy Swiss-Prot
Match: Q9LSN7 (Transcription factor bHLH147 OS=Arabidopsis thaliana OX=3702 GN=BHLH147 PE=1 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 1.6e-23
Identity = 76/192 (39.58%), Postives = 109/192 (56.77%), Query Frame = 0


Query: 5   DSNNSKTLLQHSNKCLPKILTPEPTQHRWKTEIQQQIYSSRLTQALRRV---THPRSSS- 64
           D +  K   + S   + K  +P  +  +W++E QQQIYS++L  ALR +     P SSS 
Sbjct: 22  DRSRRKRKKKSSPSSVEKSPSPSISLEKWRSEKQQQIYSTKLVHALRELRISQQPSSSSS 81

Query: 65  ---PLNGNLVRRTADSVLAATAKGRTRWSRAILATRFRQSLARRRRR----------TKK 124
              P  G  VR  AD  LA  A+G+T WSRAIL+   +    + +R+          T  
Sbjct: 82  SSIPRGGRAVREVADRALAVAARGKTLWSRAILSKAVKLKFRKHKRQRISNPTTTTLTTG 141

Query: 125 KLLARKPE--LKTEKVRKLPAVQRKVKILGRLVPGCRKLSFPNLLEEATDYISALEMQVK 178
            + ++K    +   K + LPAVQRKVK+L RLVPGCRK S P +LEE TDYI+A+EMQ++
Sbjct: 142 SIRSKKQRATVLRLKAKGLPAVQRKVKVLSRLVPGCRKQSLPVVLEETTDYIAAMEMQIR 201

[Close]

BLAST of CsaV3_2G007180 vs. ExPASy Swiss-Prot
Match: Q9M9L6 (Transcription factor bHLH150 OS=Arabidopsis thaliana OX=3702 GN=BHLH150 PE=1 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 4.6e-23
Identity = 74/153 (48.37%), Postives = 99/153 (64.71%), Query Frame = 0


Query: 28  PTQH---RWKTEIQQQIYSSRLTQALRRVTHPRSSSPLNGNLVRRTADSVLAATAKGRTR 87
           P +H   RW+    Q++YS +L  AL+R    RS++      VR TAD VLA TA+G TR
Sbjct: 55  PVRHLSRRWRATTAQKVYSLKLYDALQR--SRRSAT------VRDTADKVLATTARGATR 114

Query: 88  WSRAILATRFRQSLARRRRRTKKKLLAR--KPELKTEKVRKLPAVQRKVKILGRLVPGCR 147
           WSRAIL +RF  SL RRR       LA   +    + + RKL AV  +V++LG LVPGCR
Sbjct: 115 WSRAILVSRFGTSLRRRRNTKPASALAAAIRGSGGSGRRRKLSAVGNRVRVLGGLVPGCR 174

Query: 148 KLSFPNLLEEATDYISALEMQVKAMTALAELLA 176
           + + P LL+E  DYI+ALEMQV+AMTAL+++L+
Sbjct: 175 RTALPELLDETADYIAALEMQVRAMTALSKILS 199

[Close]

BLAST of CsaV3_2G007180 vs. ExPASy TrEMBL
Match: A0A0A0LJ14 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G034620 PE=4 SV=1)

HSP 1 Score: 352.8 bits (904), Expect = 8.7e-94
Identity = 188/188 (100.00%), Postives = 188/188 (100.00%), Query Frame = 0


Query: 1   MDADDSNNSKTLLQHSNKCLPKILTPEPTQHRWKTEIQQQIYSSRLTQALRRVTHPRSSS 60
           MDADDSNNSKTLLQHSNKCLPKILTPEPTQHRWKTEIQQQIYSSRLTQALRRVTHPRSSS
Sbjct: 1   MDADDSNNSKTLLQHSNKCLPKILTPEPTQHRWKTEIQQQIYSSRLTQALRRVTHPRSSS 60

Query: 61  PLNGNLVRRTADSVLAATAKGRTRWSRAILATRFRQSLARRRRRTKKKLLARKPELKTEK 120
           PLNGNLVRRTADSVLAATAKGRTRWSRAILATRFRQSLARRRRRTKKKLLARKPELKTEK
Sbjct: 61  PLNGNLVRRTADSVLAATAKGRTRWSRAILATRFRQSLARRRRRTKKKLLARKPELKTEK 120

Query: 121 VRKLPAVQRKVKILGRLVPGCRKLSFPNLLEEATDYISALEMQVKAMTALAELLAGNQRN 180
           VRKLPAVQRKVKILGRLVPGCRKLSFPNLLEEATDYISALEMQVKAMTALAELLAGNQRN
Sbjct: 121 VRKLPAVQRKVKILGRLVPGCRKLSFPNLLEEATDYISALEMQVKAMTALAELLAGNQRN 180

Query: 181 FAGISNDS 189
           FAGISNDS
Sbjct: 181 FAGISNDS 188

[Close]

BLAST of CsaV3_2G007180 vs. ExPASy TrEMBL
Match: A0A1S4E5A3 (transcription factor bHLH149-like OS=Cucumis melo OX=3656 GN=LOC103503137 PE=4 SV=1)

HSP 1 Score: 305.4 bits (781), Expect = 1.6e-79
Identity = 170/189 (89.95%), Postives = 175/189 (92.59%), Query Frame = 0


Query: 1   MDADDSNNSKTLLQH-SNKCLPKILTPEPTQHRWKTEIQQQIYSSRLTQALRRVTHPRSS 60
           MDAD SNNS TLL H +NK  PKILT EPTQH WKTEIQQQIYSSRL +ALRRVTHPRSS
Sbjct: 1   MDADQSNNSTTLLPHPANKRPPKILTAEPTQHTWKTEIQQQIYSSRLAEALRRVTHPRSS 60

Query: 61  SPLNGNLVRRTADSVLAATAKGRTRWSRAILATRFRQSLARRRRRTKKKLLARKPELKTE 120
           S +NGNLVR+TADSVLAATAKGR+RWSRAILATRFRQSLARRRRRT KKLLARKPELK E
Sbjct: 61  STINGNLVRQTADSVLAATAKGRSRWSRAILATRFRQSLARRRRRT-KKLLARKPELKNE 120

Query: 121 KVRKLPAVQRKVKILGRLVPGCRKLSFPNLLEEATDYISALEMQVKAMTALAELLAGNQR 180
           K RKLPAVQRKVKILGRLVPGCRKLSFPNLLEEATDYISALEMQVKAMTALAELLAGNQR
Sbjct: 121 KARKLPAVQRKVKILGRLVPGCRKLSFPNLLEEATDYISALEMQVKAMTALAELLAGNQR 180

Query: 181 NFAGISNDS 189
           N AGISNDS
Sbjct: 181 NIAGISNDS 188

[Close]

BLAST of CsaV3_2G007180 vs. ExPASy TrEMBL
Match: A0A5A7TYM9 (Transcription factor bHLH149-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold546G001010 PE=4 SV=1)

HSP 1 Score: 304.7 bits (779), Expect = 2.7e-79
Identity = 169/189 (89.42%), Postives = 175/189 (92.59%), Query Frame = 0


Query: 1   MDADDSNNSKTLLQH-SNKCLPKILTPEPTQHRWKTEIQQQIYSSRLTQALRRVTHPRSS 60
           MDAD SNNS TLL H +NK  PKI+T EPTQH WKTEIQQQIYSSRL +ALRRVTHPRSS
Sbjct: 1   MDADQSNNSTTLLPHPANKRPPKIITDEPTQHTWKTEIQQQIYSSRLAEALRRVTHPRSS 60

Query: 61  SPLNGNLVRRTADSVLAATAKGRTRWSRAILATRFRQSLARRRRRTKKKLLARKPELKTE 120
           S +NGNLVR+TADSVLAATAKGR+RWSRAILATRFRQSLARRRRRT KKLLARKPELK E
Sbjct: 61  STINGNLVRQTADSVLAATAKGRSRWSRAILATRFRQSLARRRRRT-KKLLARKPELKNE 120

Query: 121 KVRKLPAVQRKVKILGRLVPGCRKLSFPNLLEEATDYISALEMQVKAMTALAELLAGNQR 180
           K RKLPAVQRKVKILGRLVPGCRKLSFPNLLEEATDYISALEMQVKAMTALAELLAGNQR
Sbjct: 121 KARKLPAVQRKVKILGRLVPGCRKLSFPNLLEEATDYISALEMQVKAMTALAELLAGNQR 180

Query: 181 NFAGISNDS 189
           N AGISNDS
Sbjct: 181 NIAGISNDS 188

[Close]

BLAST of CsaV3_2G007180 vs. ExPASy TrEMBL
Match: A0A6J1KCR3 (transcription factor bHLH149-like OS=Cucurbita maxima OX=3661 GN=LOC111493732 PE=4 SV=1)

HSP 1 Score: 219.2 bits (557), Expect = 1.5e-53
Identity = 134/195 (68.72%), Postives = 149/195 (76.41%), Query Frame = 0


Query: 1   MDADDSNNSKTLLQHSNKCL--PKILTPEPTQHRWKTEIQQQIYSSRLTQALRRVTHPRS 60
           MDA++S NS+  LQ  NK L     ++ E  + RW+TE++QQIYSSRL +AL+RV+  RS
Sbjct: 1   MDAEESKNSRRSLQKPNKRLQIASNVSAEGRERRWRTEVEQQIYSSRLAEALQRVSRQRS 60

Query: 61  S----SPLNGNLVRRTADSVLAATAKGRTRWSRAILATRFRQSLARRRRRTKKKLLARKP 120
           S    S +NG LVR TAD VLAA AKGRTRWSRAILA RFRQ LARRRR   KK + RKP
Sbjct: 61  SPHARSTINGRLVRETADCVLAAAAKGRTRWSRAILANRFRQRLARRRR--TKKSIGRKP 120

Query: 121 ELKTE-KVRKLPAVQRKVKILGRLVPGCRKLSFPNLLEEATDYISALEMQVKAMTALAEL 180
               E K RKLPAVQRKVKILGRLVPGCRKLSFPNLLEEATDYISALEMQVKAM ALAE+
Sbjct: 121 SRVEEVKNRKLPAVQRKVKILGRLVPGCRKLSFPNLLEEATDYISALEMQVKAMAALAEI 180

Query: 181 LAGNQRNFAGISNDS 189
           LAG Q N   ISNDS
Sbjct: 181 LAGAQSNLLPISNDS 193

[Close]

BLAST of CsaV3_2G007180 vs. ExPASy TrEMBL
Match: A0A6J1G430 (transcription factor bHLH149-like OS=Cucurbita moschata OX=3662 GN=LOC111450552 PE=4 SV=1)

HSP 1 Score: 218.8 bits (556), Expect = 2.0e-53
Identity = 132/195 (67.69%), Postives = 149/195 (76.41%), Query Frame = 0


Query: 1   MDADDSNNSKTLLQHSNK--CLPKILTPEPTQHRWKTEIQQQIYSSRLTQALRRV----T 60
           MDA++S NSK  LQ  NK   +   ++ E  + RW+TE++QQIYSSRL +AL+RV    +
Sbjct: 1   MDAEESKNSKRSLQKPNKRRQIASDVSAEGRERRWRTEVEQQIYSSRLAEALQRVGRLPS 60

Query: 61  HPRSSSPLNGNLVRRTADSVLAATAKGRTRWSRAILATRFRQSLARRRRRTKKKLLARKP 120
            P + S +NG LVR TAD VLAA AKGRTRWSRAILA RFRQ LARRRR   KK + RKP
Sbjct: 61  SPHARSTINGRLVRETADCVLAAAAKGRTRWSRAILANRFRQRLARRRR--TKKSIGRKP 120

Query: 121 ELKTE-KVRKLPAVQRKVKILGRLVPGCRKLSFPNLLEEATDYISALEMQVKAMTALAEL 180
               E K RKLPAVQRKV+ILGRLVPGCRKLSFPNLLEEATDYISALEMQVKAM ALAE+
Sbjct: 121 SRVAEVKNRKLPAVQRKVRILGRLVPGCRKLSFPNLLEEATDYISALEMQVKAMAALAEI 180

Query: 181 LAGNQRNFAGISNDS 189
           LAG QRN   ISNDS
Sbjct: 181 LAGAQRNLLPISNDS 193

[Close]

BLAST of CsaV3_2G007180 vs. TAIR 10
Match: AT1G09250.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 138.3 bits (347), Expect = 6.5e-33
Identity = 90/160 (56.25%), Postives = 111/160 (69.38%), Query Frame = 0


Query: 27  EPTQHRWKTEIQQQIYSSRLTQALRRVTHPRSSSPLNGNL----------VRRTADSVLA 86
           E +  RWKT   QQIY+ +L +ALRRV   RSS+  N             +R TAD VLA
Sbjct: 38  EESLKRWKTNRVQQIYACKLVEALRRV-RQRSSTTSNNETDKLVSGAAREIRDTADRVLA 97

Query: 87  ATAKGRTRWSRAILATRFRQSLARRRRRTKK--KLLARKPELKTEKVRKLPAVQRKVKIL 146
           A+A+G TRWSRAILA+R R  L + R+  K      +RK   +T ++ KLPAV+RK+KIL
Sbjct: 98  ASARGTTRWSRAILASRVRAKLKKHRKAKKSTGNCKSRKGLTETNRI-KLPAVERKLKIL 157

Query: 147 GRLVPGCRKLSFPNLLEEATDYISALEMQVKAMTALAELL 175
           GRLVPGCRK+S PNLL+EATDYI+ALEMQV+AM ALAELL
Sbjct: 158 GRLVPGCRKVSVPNLLDEATDYIAALEMQVRAMEALAELL 195

[Close]

BLAST of CsaV3_2G007180 vs. TAIR 10
Match: AT3G06590.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 111.3 bits (277), Expect = 8.5e-25
Identity = 76/166 (45.78%), Postives = 102/166 (61.45%), Query Frame = 0


Query: 32  RWKTEIQQQIYSSRLTQALRRV----THPRSSSPL---NGNLVRRTADSVLAATAKGRTR 91
           RW++E QQ+IYS++L QAL++V    +   SSSP     G  VR  AD  LA +A+GRT 
Sbjct: 47  RWRSEKQQRIYSAKLFQALQQVRLNSSASTSSSPTAQKRGKAVREAADRALAVSARGRTL 106

Query: 92  WSRAILATRFRQSLARRRRRTKKKLL-------------ARKPELKTEKVRK--LPAVQR 151
           WSRAILA R +    ++RR      +             +RK  +   ++ K  +P V R
Sbjct: 107 WSRAILANRIKLKFRKQRRPRATMAIPAMTTVVSSSSNRSRKRRVSVLRLNKKSIPDVNR 166

Query: 152 KVKILGRLVPGCRKLSFPNLLEEATDYISALEMQVKAMTALAELLA 176
           KV++LGRLVPGC K S P +LEEATDYI ALEMQV+AM +L +LL+
Sbjct: 167 KVRVLGRLVPGCGKQSVPVILEEATDYIQALEMQVRAMNSLVQLLS 212

[Close]

BLAST of CsaV3_2G007180 vs. TAIR 10
Match: AT3G06590.2 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 111.3 bits (277), Expect = 8.5e-25
Identity = 76/166 (45.78%), Postives = 102/166 (61.45%), Query Frame = 0


Query: 32  RWKTEIQQQIYSSRLTQALRRV----THPRSSSPL---NGNLVRRTADSVLAATAKGRTR 91
           RW++E QQ+IYS++L QAL++V    +   SSSP     G  VR  AD  LA +A+GRT 
Sbjct: 47  RWRSEKQQRIYSAKLFQALQQVRLNSSASTSSSPTAQKRGKAVREAADRALAVSARGRTL 106

Query: 92  WSRAILATRFRQSLARRRRRTKKKLL-------------ARKPELKTEKVRK--LPAVQR 151
           WSRAILA R +    ++RR      +             +RK  +   ++ K  +P V R
Sbjct: 107 WSRAILANRIKLKFRKQRRPRATMAIPAMTTVVSSSSNRSRKRRVSVLRLNKKSIPDVNR 166

Query: 152 KVKILGRLVPGCRKLSFPNLLEEATDYISALEMQVKAMTALAELLA 176
           KV++LGRLVPGC K S P +LEEATDYI ALEMQV+AM +L +LL+
Sbjct: 167 KVRVLGRLVPGCGKQSVPVILEEATDYIQALEMQVRAMNSLVQLLS 212

[Close]

BLAST of CsaV3_2G007180 vs. TAIR 10
Match: AT3G17100.1 (sequence-specific DNA binding transcription factors )

HSP 1 Score: 110.9 bits (276), Expect = 1.1e-24
Identity = 76/192 (39.58%), Postives = 109/192 (56.77%), Query Frame = 0


Query: 5   DSNNSKTLLQHSNKCLPKILTPEPTQHRWKTEIQQQIYSSRLTQALRRV---THPRSSS- 64
           D +  K   + S   + K  +P  +  +W++E QQQIYS++L  ALR +     P SSS 
Sbjct: 22  DRSRRKRKKKSSPSSVEKSPSPSISLEKWRSEKQQQIYSTKLVHALRELRISQQPSSSSS 81

Query: 65  ---PLNGNLVRRTADSVLAATAKGRTRWSRAILATRFRQSLARRRRR----------TKK 124
              P  G  VR  AD  LA  A+G+T WSRAIL+   +    + +R+          T  
Sbjct: 82  SSIPRGGRAVREVADRALAVAARGKTLWSRAILSKAVKLKFRKHKRQRISNPTTTTLTTG 141

Query: 125 KLLARKPE--LKTEKVRKLPAVQRKVKILGRLVPGCRKLSFPNLLEEATDYISALEMQVK 178
            + ++K    +   K + LPAVQRKVK+L RLVPGCRK S P +LEE TDYI+A+EMQ++
Sbjct: 142 SIRSKKQRATVLRLKAKGLPAVQRKVKVLSRLVPGCRKQSLPVVLEETTDYIAAMEMQIR 201

[Close]

BLAST of CsaV3_2G007180 vs. TAIR 10
Match: AT3G17100.2 (sequence-specific DNA binding transcription factors )

HSP 1 Score: 110.9 bits (276), Expect = 1.1e-24
Identity = 76/192 (39.58%), Postives = 109/192 (56.77%), Query Frame = 0


Query: 5   DSNNSKTLLQHSNKCLPKILTPEPTQHRWKTEIQQQIYSSRLTQALRRV---THPRSSS- 64
           D +  K   + S   + K  +P  +  +W++E QQQIYS++L  ALR +     P SSS 
Sbjct: 22  DRSRRKRKKKSSPSSVEKSPSPSISLEKWRSEKQQQIYSTKLVHALRELRISQQPSSSSS 81

Query: 65  ---PLNGNLVRRTADSVLAATAKGRTRWSRAILATRFRQSLARRRRR----------TKK 124
              P  G  VR  AD  LA  A+G+T WSRAIL+   +    + +R+          T  
Sbjct: 82  SSIPRGGRAVREVADRALAVAARGKTLWSRAILSKAVKLKFRKHKRQRISNPTTTTLTTG 141

Query: 125 KLLARKPE--LKTEKVRKLPAVQRKVKILGRLVPGCRKLSFPNLLEEATDYISALEMQVK 178
            + ++K    +   K + LPAVQRKVK+L RLVPGCRK S P +LEE TDYI+A+EMQ++
Sbjct: 142 SIRSKKQRATVLRLKAKGLPAVQRKVKVLSRLVPGCRKQSLPVVLEETTDYIAAMEMQIR 201

The following BLAST results are available for this feature:

BLAST of CsaV3_2G007180 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004144744.1	1.8e-93	100.00	transcription factor bHLH149 [Cucumis sativus] >KGN61009.1 hypothetical protein ...	[more]
XP_016903402.1	3.3e-79	89.95	PREDICTED: transcription factor bHLH149-like [Cucumis melo]	[more]
KAA0048078.1	5.6e-79	89.42	transcription factor bHLH149-like protein [Cucumis melo var. makuwa] >TYJ96458.1...	[more]
XP_038890546.1	8.5e-59	71.21	transcription factor bHLH149 [Benincasa hispida]	[more]
XP_022999326.1	3.1e-53	68.72	transcription factor bHLH149-like [Cucurbita maxima]	[more]

BLAST of CsaV3_2G007180 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O80482	9.2e-32	56.25	Transcription factor bHLH149 OS=Arabidopsis thaliana OX=3702 GN=BHLH149 PE=1 SV=...	[more]
Q9C8Z9	1.2e-23	45.78	Transcription factor bHLH148 OS=Arabidopsis thaliana OX=3702 GN=BHLH148 PE=1 SV=...	[more]
Q9LSN7	1.6e-23	39.58	Transcription factor bHLH147 OS=Arabidopsis thaliana OX=3702 GN=BHLH147 PE=1 SV=...	[more]
Q9M9L6	4.6e-23	48.37	Transcription factor bHLH150 OS=Arabidopsis thaliana OX=3702 GN=BHLH150 PE=1 SV=...	[more]

BLAST of CsaV3_2G007180 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LJ14	8.7e-94	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G034620 PE=4 SV=1	[more]
A0A1S4E5A3	1.6e-79	89.95	transcription factor bHLH149-like OS=Cucumis melo OX=3656 GN=LOC103503137 PE=4 S...	[more]
A0A5A7TYM9	2.7e-79	89.42	Transcription factor bHLH149-like protein OS=Cucumis melo var. makuwa OX=1194695...	[more]
A0A6J1KCR3	1.5e-53	68.72	transcription factor bHLH149-like OS=Cucurbita maxima OX=3661 GN=LOC111493732 PE...	[more]
A0A6J1G430	2.0e-53	67.69	transcription factor bHLH149-like OS=Cucurbita moschata OX=3662 GN=LOC111450552 ...	[more]

BLAST of CsaV3_2G007180 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G09250.1	6.5e-33	56.25	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT3G06590.1	8.5e-25	45.78	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT3G06590.2	8.5e-25	45.78	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT3G17100.1	1.1e-24	39.58	sequence-specific DNA binding transcription factors	[more]
AT3G17100.2	1.1e-24	39.58	sequence-specific DNA binding transcription factors	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR044660	Transcription factor IBH1-like	PANTHER	PTHR33124	TRANSCRIPTION FACTOR IBH1-LIKE 1	coord: 27..179
None	No IPR available	PANTHER	PTHR33124:SF12	TRANSCRIPTION FACTOR BHLH148	coord: 27..179
IPR044549	Transcription factor IBH1-like, bHLH domain	CDD	cd11444	bHLH_AtIBH1_like	coord: 122..171 e-value: 1.79171E-17 score: 70.7292
IPR036638	Helix-loop-helix DNA-binding domain superfamily	SUPERFAMILY	47459	HLH, helix-loop-helix DNA-binding domain	coord: 127..177

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_2G007180.1	CsaV3_2G007180.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
molecular_function	GO:0046983	protein dimerization activity