CsaV3_2G005120 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_2G005120
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Pentatricopeptide repeat-containing protein
Location	chr2: 2793072 .. 2795609 (-)
RNA-Seq Expression	CsaV3_2G005120
Synteny	CsaV3_2G005120

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAGACCACAACTATAGCTTCTTCTTCAACTTGCTCCATTTTCTTCAACCCTCTTCTCAATTTCACCCTTTCAAATCCCATAACTCCACCCAAATCCCTATTCATTTCCACCATTGTTGCAGTTTCCGATGGATTGCAGCCTCAAACATTGACCATTTGCGCTAGAAAGAAGAAGAGAAGTCCTGGGTTTCAGAGATCAACCAAATTAGTGTTTGAATTGGCTTCTCTCTTAGCCTCCAATCTCAAGATCTTACCGCCGCCTCTGGATTTAGTCGTCGCGGAATTGAGCGGAGGAGATGGTAACGGAGGTGGTTCGAGGCTGTGGAGGGGTTTTGGTGGAGGTGACTATGATGGATGGAGAGGTAAAAGGAAGAAGACGCCGTTGTTGATTGGGTTTTTGATTGTTTGTGGTTTGGTTTTGTTGTTTGTGACTGATTTTGAGATCAATGTGGTTTGTGGGGTTCTTGGATTTGCTGTATTCGGTGTTGCATTGATTCAATTGTGGCAGAAAATCGGGATTTCGAAAGATTTTGTTTTGGGGTTTGGCCTTTTTGGCATTTTGATTGCCTTGGGATTGAGAAGATCTGAAGTGCAAAGATGGGTTGGGAAATTAGGGATTTACAGTTCAAAGAGGAAGAGTTTGAGAAGAAAACTTAAAGGTAGGAGAATCTTCTGAGCGAGCTATTCGATAAAGACTATATTATCTATTATGCATTTTTTTTTCTTCGAATGAGATTATAGCGAGAGATTTAATAGATATTTCCCCTTCATATCTTTAACACAATTCTTACTCGATGGTTCATATCCATAATCTTCAATCTCGCATTTCTGATCGAGAACGAAGATAATGAACCAGAATTATTACACTGTTATGAGTTTCTTGGAAAAATGCAAAACCATGAAGGAGTTGAAACAAATTCACAGTCTGATGATCACAACTTCAGTCGTCAAGAACATAATCCCTTGCAGCAGACTTATTGATTTTTGCGCAAATTCCGAATTGGGTGACATTGAATATGCGAGAACAGTATTCGATCAAATTAATCAGCGGACTGTCTACATCTGGAACTCGATGATCAAAGGGTACTGCAATGGCGGTGACAAGTTTGGAGCTCTGTTTATGTATGAAGAAATGCAGCGTAAAGGCTTCTCCCCGGACCATTTCACCTTCCCTTTTGTGTTGAAAGTTTGCTCCATAATCGATCTTCTTGTGTATGGACAAAGTGTTCATAATCGAATCGTGAAAACTGGGTTTGAATTAGATGTGTACACTTCTTCTTGTTTGCTCAATATGTATGTTTCTTGTGGAGATTTGAATTCTGGGCTTAAGGTGTTTGAGTTTATTCCCAAATGGAATGTGGTCGCTTGGACTTCCTTAATTGCAGGGTTTGTGAACAATGATCAGCCCAAAGAAGCTTTGAGATTGTTCAAAGATATGGAGAATGAAGGTGTGGAGCCTAATGAAATCACCATGACCACAGCTTTGGCTGCAGCTGCTCGTTGCAGGGATATTCATACTGGGAAACTGGTCCACGATCGTCTTCGCCAACTTGGTTTTGATCCATTTGACACAAACTCCTGCTTCAATGTAATACTTGCAACTGCAATCATGGACATGTATGCAAAATGTGGCAAGTTGGTGACTGCACGGAATCTGTTTGATAAGATGCCTCAAAGAAACTTGGTTGTTTGGAATTCAATGATCAGTGCTTATAGTCAATATGGTCGAGGAGCAGAGGCTTTGCGTCTTTTCGTTGACATGGAAATGGCTGGGTTTGTTCCTAATAAAGCAACGTTTTTGAGTGTGATAAGTGCTTGCACCCATATGGGGTTTCGATCAACAGGACGAAGTTTACATGCTCGTGCGTTGAGAGCAAGTTTCCACGAGTTTGTTGCCATTGGAACTGCTCTTATGGACATGTATGCCAAGGCTGGAGATGCAGATACTGCATTGAAGATCTTCAGCAAGTTGAGGAAGAAAGATGTAATGGCGTGGACGACGATGATATCAGGCTTAGCAATCCAAGGCAAAGGCAAAGAAGCGCTGAATGTGTTCAGAAGAATGGAAGAAGAAGCTGAAGTTGCTCCTGACCAAATCACCTACATAGCAGTTCTGTGGGCATGCAGCCATCTCGGGCTGGTCGAAGAAGGTCAGAAACAGTTTACCTCCATGACTGAGGTTTACGGTATTGAGCCTACCATGGAGCATTATGGCTGCATGATTGATCTTTTGAGTCGTGCAGGCCACTCCAAAGAGGCCGAGGAGCTCCTGATGAAAATGCCAACGCAGCCTAATGCAACAATCTTGAGTTCTATTCTGAATGGTTGTGAAATGTATGGAAATGTAGGTCTTGCCAACAGAGTGAAAAGTCACATAGTAGAGTTGGAGAATTCTAGTAGTGGTGTTTATGTACTTTTGTCAAATATTCATGCCAAAGCCTGTAATTGGCAGGAAATGAAGCTGGCTAGAGATATGTTGAAGCATAAAAATATTGGGAAAACTCTTGGGAACAGTTTTGTTGAAATAAAGCCTTAG

mRNA sequence

ATGCAGACCACAACTATAGCTTCTTCTTCAACTTGCTCCATTTTCTTCAACCCTCTTCTCAATTTCACCCTTTCAAATCCCATAACTCCACCCAAATCCCTATTCATTTCCACCATTGTTGCAGTTTCCGATGGATTGCAGCCTCAAACATTGACCATTTGCGCTAGAAAGAAGAAGAGAAGTCCTGGGTTTCAGAGATCAACCAAATTAGTGTTTGAATTGGCTTCTCTCTTAGCCTCCAATCTCAAGATCTTACCGCCGCCTCTGGATTTAGTCGTCGCGGAATTGAGCGGAGGAGATGGTAACGGAGGTGGTTCGAGGCTGTGGAGGGGTTTTGGTGGAGGTGACTATGATGGATGGAGAGGTAAAAGGAAGAAGACGCCGTTGTTGATTGGGTTTTTGATTGTTTGTGGTTTGGTTTTGTTGTTTGTGACTGATTTTGAGATCAATGTGGTTTGTGGGGTTCTTGGATTTGCTGTATTCGGTGTTGCATTGATTCAATTGTGGCAGAAAATCGGGATTTCGAAAGATTTTGTTTTGGGGTTTGGCCTTTTTGGCATTTTGATTGCCTTGGGATTGAGAAGATCTGAAGTGCAAAGATGGGTTGGGAAATTAGGGATTTACAGTTCAAAGAGGAAGAGTTTGAGAAGAAAACTTAAAGTCGTCAAGAACATAATCCCTTGCAGCAGACTTATTGATTTTTGCGCAAATTCCGAATTGGGTGACATTGAATATGCGAGAACAGTATTCGATCAAATTAATCAGCGGACTGTCTACATCTGGAACTCGATGATCAAAGGGTACTGCAATGGCGGTGACAAGTTTGGAGCTCTGTTTATGTATGAAGAAATGCAGCGTAAAGGCTTCTCCCCGGACCATTTCACCTTCCCTTTTGTGTTGAAAGTTTGCTCCATAATCGATCTTCTTGTGTATGGACAAAGTGTTCATAATCGAATCGTGAAAACTGGGTTTGAATTAGATGTGTACACTTCTTCTTGTTTGCTCAATATGTATGTTTCTTGTGGAGATTTGAATTCTGGGCTTAAGGTGTTTGAGTTTATTCCCAAATGGAATGTGGTCGCTTGGACTTCCTTAATTGCAGGGTTTGTGAACAATGATCAGCCCAAAGAAGCTTTGAGATTGTTCAAAGATATGGAGAATGAAGGTGTGGAGCCTAATGAAATCACCATGACCACAGCTTTGGCTGCAGCTGCTCGTTGCAGGGATATTCATACTGGGAAACTGGTCCACGATCGTCTTCGCCAACTTGGTTTTGATCCATTTGACACAAACTCCTGCTTCAATGAAATGAAGCTGGCTAGAGATATGTTGAAGCATAAAAATATTGGGAAAACTCTTGGGAACAGTTTTGTTGAAATAAAGCCTTAG

Coding sequence (CDS)

ATGCAGACCACAACTATAGCTTCTTCTTCAACTTGCTCCATTTTCTTCAACCCTCTTCTCAATTTCACCCTTTCAAATCCCATAACTCCACCCAAATCCCTATTCATTTCCACCATTGTTGCAGTTTCCGATGGATTGCAGCCTCAAACATTGACCATTTGCGCTAGAAAGAAGAAGAGAAGTCCTGGGTTTCAGAGATCAACCAAATTAGTGTTTGAATTGGCTTCTCTCTTAGCCTCCAATCTCAAGATCTTACCGCCGCCTCTGGATTTAGTCGTCGCGGAATTGAGCGGAGGAGATGGTAACGGAGGTGGTTCGAGGCTGTGGAGGGGTTTTGGTGGAGGTGACTATGATGGATGGAGAGGTAAAAGGAAGAAGACGCCGTTGTTGATTGGGTTTTTGATTGTTTGTGGTTTGGTTTTGTTGTTTGTGACTGATTTTGAGATCAATGTGGTTTGTGGGGTTCTTGGATTTGCTGTATTCGGTGTTGCATTGATTCAATTGTGGCAGAAAATCGGGATTTCGAAAGATTTTGTTTTGGGGTTTGGCCTTTTTGGCATTTTGATTGCCTTGGGATTGAGAAGATCTGAAGTGCAAAGATGGGTTGGGAAATTAGGGATTTACAGTTCAAAGAGGAAGAGTTTGAGAAGAAAACTTAAAGTCGTCAAGAACATAATCCCTTGCAGCAGACTTATTGATTTTTGCGCAAATTCCGAATTGGGTGACATTGAATATGCGAGAACAGTATTCGATCAAATTAATCAGCGGACTGTCTACATCTGGAACTCGATGATCAAAGGGTACTGCAATGGCGGTGACAAGTTTGGAGCTCTGTTTATGTATGAAGAAATGCAGCGTAAAGGCTTCTCCCCGGACCATTTCACCTTCCCTTTTGTGTTGAAAGTTTGCTCCATAATCGATCTTCTTGTGTATGGACAAAGTGTTCATAATCGAATCGTGAAAACTGGGTTTGAATTAGATGTGTACACTTCTTCTTGTTTGCTCAATATGTATGTTTCTTGTGGAGATTTGAATTCTGGGCTTAAGGTGTTTGAGTTTATTCCCAAATGGAATGTGGTCGCTTGGACTTCCTTAATTGCAGGGTTTGTGAACAATGATCAGCCCAAAGAAGCTTTGAGATTGTTCAAAGATATGGAGAATGAAGGTGTGGAGCCTAATGAAATCACCATGACCACAGCTTTGGCTGCAGCTGCTCGTTGCAGGGATATTCATACTGGGAAACTGGTCCACGATCGTCTTCGCCAACTTGGTTTTGATCCATTTGACACAAACTCCTGCTTCAATGAAATGAAGCTGGCTAGAGATATGTTGAAGCATAAAAATATTGGGAAAACTCTTGGGAACAGTTTTGTTGAAATAAAGCCTTAG

Protein sequence

MQTTTIASSSTCSIFFNPLLNFTLSNPITPPKSLFISTIVAVSDGLQPQTLTICARKKKRSPGFQRSTKLVFELASLLASNLKILPPPLDLVVAELSGGDGNGGGSRLWRGFGGGDYDGWRGKRKKTPLLIGFLIVCGLVLLFVTDFEINVVCGVLGFAVFGVALIQLWQKIGISKDFVLGFGLFGILIALGLRRSEVQRWVGKLGIYSSKRKSLRRKLKVVKNIIPCSRLIDFCANSELGDIEYARTVFDQINQRTVYIWNSMIKGYCNGGDKFGALFMYEEMQRKGFSPDHFTFPFVLKVCSIIDLLVYGQSVHNRIVKTGFELDVYTSSCLLNMYVSCGDLNSGLKVFEFIPKWNVVAWTSLIAGFVNNDQPKEALRLFKDMENEGVEPNEITMTTALAAAARCRDIHTGKLVHDRLRQLGFDPFDTNSCFNEMKLARDMLKHKNIGKTLGNSFVEIKP*

Homology

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BLAST of CsaV3_2G005120 vs. NCBI nr
Match: KAE8651593.1 (hypothetical protein Csa_023453 [Cucumis sativus])

HSP 1 Score: 929.9 bits (2402), Expect = 8.8e-267
Identity = 462/462 (100.00%), Postives = 462/462 (100.00%), Query Frame = 0


Query: 1   MQTTTIASSSTCSIFFNPLLNFTLSNPITPPKSLFISTIVAVSDGLQPQTLTICARKKKR 60
           MQTTTIASSSTCSIFFNPLLNFTLSNPITPPKSLFISTIVAVSDGLQPQTLTICARKKKR
Sbjct: 1   MQTTTIASSSTCSIFFNPLLNFTLSNPITPPKSLFISTIVAVSDGLQPQTLTICARKKKR 60

Query: 61  SPGFQRSTKLVFELASLLASNLKILPPPLDLVVAELSGGDGNGGGSRLWRGFGGGDYDGW 120
           SPGFQRSTKLVFELASLLASNLKILPPPLDLVVAELSGGDGNGGGSRLWRGFGGGDYDGW
Sbjct: 61  SPGFQRSTKLVFELASLLASNLKILPPPLDLVVAELSGGDGNGGGSRLWRGFGGGDYDGW 120

Query: 121 RGKRKKTPLLIGFLIVCGLVLLFVTDFEINVVCGVLGFAVFGVALIQLWQKIGISKDFVL 180
           RGKRKKTPLLIGFLIVCGLVLLFVTDFEINVVCGVLGFAVFGVALIQLWQKIGISKDFVL
Sbjct: 121 RGKRKKTPLLIGFLIVCGLVLLFVTDFEINVVCGVLGFAVFGVALIQLWQKIGISKDFVL 180

Query: 181 GFGLFGILIALGLRRSEVQRWVGKLGIYSSKRKSLRRKLKVVKNIIPCSRLIDFCANSEL 240
           GFGLFGILIALGLRRSEVQRWVGKLGIYSSKRKSLRRKLKVVKNIIPCSRLIDFCANSEL
Sbjct: 181 GFGLFGILIALGLRRSEVQRWVGKLGIYSSKRKSLRRKLKVVKNIIPCSRLIDFCANSEL 240

Query: 241 GDIEYARTVFDQINQRTVYIWNSMIKGYCNGGDKFGALFMYEEMQRKGFSPDHFTFPFVL 300
           GDIEYARTVFDQINQRTVYIWNSMIKGYCNGGDKFGALFMYEEMQRKGFSPDHFTFPFVL
Sbjct: 241 GDIEYARTVFDQINQRTVYIWNSMIKGYCNGGDKFGALFMYEEMQRKGFSPDHFTFPFVL 300

Query: 301 KVCSIIDLLVYGQSVHNRIVKTGFELDVYTSSCLLNMYVSCGDLNSGLKVFEFIPKWNVV 360
           KVCSIIDLLVYGQSVHNRIVKTGFELDVYTSSCLLNMYVSCGDLNSGLKVFEFIPKWNVV
Sbjct: 301 KVCSIIDLLVYGQSVHNRIVKTGFELDVYTSSCLLNMYVSCGDLNSGLKVFEFIPKWNVV 360

Query: 361 AWTSLIAGFVNNDQPKEALRLFKDMENEGVEPNEITMTTALAAAARCRDIHTGKLVHDRL 420
           AWTSLIAGFVNNDQPKEALRLFKDMENEGVEPNEITMTTALAAAARCRDIHTGKLVHDRL
Sbjct: 361 AWTSLIAGFVNNDQPKEALRLFKDMENEGVEPNEITMTTALAAAARCRDIHTGKLVHDRL 420

Query: 421 RQLGFDPFDTNSCFNEMKLARDMLKHKNIGKTLGNSFVEIKP 463
           RQLGFDPFDTNSCFNEMKLARDMLKHKNIGKTLGNSFVEIKP
Sbjct: 421 RQLGFDPFDTNSCFNEMKLARDMLKHKNIGKTLGNSFVEIKP 462

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BLAST of CsaV3_2G005120 vs. NCBI nr
Match: XP_004139361.1 (putative pentatricopeptide repeat-containing protein At3g05240 [Cucumis sativus])

HSP 1 Score: 456.4 bits (1173), Expect = 2.8e-124
Identity = 220/238 (92.44%), Postives = 222/238 (93.28%), Query Frame = 0


Query: 214 SLRRKLKVVKNIIPCSRLIDFCANSELGDIEYARTVFDQINQRTVYIWNSMIKGYCNGGD 273
           SL     VVKNIIPCSRLIDFCANSELGDIEYARTVFDQINQRTVYIWNSMIKGYCNGGD
Sbjct: 26  SLMITTSVVKNIIPCSRLIDFCANSELGDIEYARTVFDQINQRTVYIWNSMIKGYCNGGD 85

Query: 274 KFGALFMYEEMQRKGFSPDHFTFPFVLKVCSIIDLLVYGQSVHNRIVKTGFELDVYTSSC 333
           KFGALFMYEEMQRKGFSPDHFTFPFVLKVCSIIDLLVYGQSVHNRIVKTGFELDVYTSSC
Sbjct: 86  KFGALFMYEEMQRKGFSPDHFTFPFVLKVCSIIDLLVYGQSVHNRIVKTGFELDVYTSSC 145

Query: 334 LLNMYVSCGDLNSGLKVFEFIPKWNVVAWTSLIAGFVNNDQPKEALRLFKDMENEGVEPN 393
           LLNMYVSCGDLNSGLKVFEFIPKWNVVAWTSLIAGFVNNDQPKEALRLFKDMENEGVEPN
Sbjct: 146 LLNMYVSCGDLNSGLKVFEFIPKWNVVAWTSLIAGFVNNDQPKEALRLFKDMENEGVEPN 205

Query: 394 EITMTTALAAAARCRDIHTGKLVHDRLRQLGFDPFDTNSCFNEMKLARDMLKHKNIGK 452
           EITMTTALAAAARCRDIHTGKLVHDRLRQLGFDPFDTNSCFN +     M  +   GK
Sbjct: 206 EITMTTALAAAARCRDIHTGKLVHDRLRQLGFDPFDTNSCFNVILATAIMDMYAKCGK 263

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BLAST of CsaV3_2G005120 vs. NCBI nr
Match: XP_008454853.1 (PREDICTED: putative pentatricopeptide repeat-containing protein At3g05240 [Cucumis melo] >AAO45757.1 selenium binding protein-like protein [Cucumis melo subsp. melo] >KAA0047953.1 putative pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 431.4 bits (1108), Expect = 9.8e-117
Identity = 210/238 (88.24%), Postives = 214/238 (89.92%), Query Frame = 0


Query: 214 SLRRKLKVVKNIIPCSRLIDFCANSELGDIEYARTVFDQINQRTVYIWNSMIKGYCNGGD 273
           SL  K  VVKNIIPCSRLIDFCANSELGDIEYARTVFDQ +Q TVY+WNSMIKGYCNGGD
Sbjct: 26  SLMIKTSVVKNIIPCSRLIDFCANSELGDIEYARTVFDQTDQLTVYVWNSMIKGYCNGGD 85

Query: 274 KFGALFMYEEMQRKGFSPDHFTFPFVLKVCSIIDLLVYGQSVHNRIVKTGFELDVYTSSC 333
           KFGALFMYEEMQRKGF PDHFTFPFVLKVCS IDLLVYGQSVHNRIVKTGFELDVYTSSC
Sbjct: 86  KFGALFMYEEMQRKGFYPDHFTFPFVLKVCSAIDLLVYGQSVHNRIVKTGFELDVYTSSC 145

Query: 334 LLNMYVSCGDLNSGLKVFEFIPKWNVVAWTSLIAGFVNNDQPKEALRLFKDMENEGVEPN 393
           LLNMYVSCGDLNSGLKVFEFIPKWNVVAWTSLIAGFVNNDQPKEALRLFKDMENEGVEPN
Sbjct: 146 LLNMYVSCGDLNSGLKVFEFIPKWNVVAWTSLIAGFVNNDQPKEALRLFKDMENEGVEPN 205

Query: 394 EITMTTALAAAARCRDIHTGKLVHDRLRQLGFDPFDTNSCFNEMKLARDMLKHKNIGK 452
           EITMTTALAAAARCRDIHTGKLV  RLRQLG DPF TNS FN +     M  +   GK
Sbjct: 206 EITMTTALAAAARCRDIHTGKLVRYRLRQLGLDPFHTNSRFNVILATAIMDMYAKCGK 263

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BLAST of CsaV3_2G005120 vs. NCBI nr
Match: TYK18322.1 (putative pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 430.3 bits (1105), Expect = 2.2e-116
Identity = 209/238 (87.82%), Postives = 215/238 (90.34%), Query Frame = 0


Query: 214 SLRRKLKVVKNIIPCSRLIDFCANSELGDIEYARTVFDQINQRTVYIWNSMIKGYCNGGD 273
           SL  K  VVKNIIPCSRLIDFCANSELGDIEYARTVFD+ +Q TVY+WNSMIKGYCNGGD
Sbjct: 26  SLMIKTSVVKNIIPCSRLIDFCANSELGDIEYARTVFDRTDQLTVYVWNSMIKGYCNGGD 85

Query: 274 KFGALFMYEEMQRKGFSPDHFTFPFVLKVCSIIDLLVYGQSVHNRIVKTGFELDVYTSSC 333
           KFGALFMYEEMQRKGF PDHFTFPFVLKVCS+IDLLVYGQSVHNRIVKTGFELDVYTSSC
Sbjct: 86  KFGALFMYEEMQRKGFYPDHFTFPFVLKVCSVIDLLVYGQSVHNRIVKTGFELDVYTSSC 145

Query: 334 LLNMYVSCGDLNSGLKVFEFIPKWNVVAWTSLIAGFVNNDQPKEALRLFKDMENEGVEPN 393
           LLNMYVSCGDLNSGLKVFEFIPKWNVVAWTSLIAGFVNNDQPKEALRLFKDMENEGVEPN
Sbjct: 146 LLNMYVSCGDLNSGLKVFEFIPKWNVVAWTSLIAGFVNNDQPKEALRLFKDMENEGVEPN 205

Query: 394 EITMTTALAAAARCRDIHTGKLVHDRLRQLGFDPFDTNSCFNEMKLARDMLKHKNIGK 452
           EITMTTALAAAARCRDIHTGKLV  RLRQLG DPF TNS FN +     M  +   GK
Sbjct: 206 EITMTTALAAAARCRDIHTGKLVLYRLRQLGLDPFHTNSRFNVILATAIMDMYAKCGK 263

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BLAST of CsaV3_2G005120 vs. NCBI nr
Match: XP_004139360.1 (uncharacterized protein LOC101213268 [Cucumis sativus])

HSP 1 Score: 424.9 bits (1091), Expect = 9.1e-115
Identity = 220/220 (100.00%), Postives = 220/220 (100.00%), Query Frame = 0


Query: 1   MQTTTIASSSTCSIFFNPLLNFTLSNPITPPKSLFISTIVAVSDGLQPQTLTICARKKKR 60
           MQTTTIASSSTCSIFFNPLLNFTLSNPITPPKSLFISTIVAVSDGLQPQTLTICARKKKR
Sbjct: 1   MQTTTIASSSTCSIFFNPLLNFTLSNPITPPKSLFISTIVAVSDGLQPQTLTICARKKKR 60

Query: 61  SPGFQRSTKLVFELASLLASNLKILPPPLDLVVAELSGGDGNGGGSRLWRGFGGGDYDGW 120
           SPGFQRSTKLVFELASLLASNLKILPPPLDLVVAELSGGDGNGGGSRLWRGFGGGDYDGW
Sbjct: 61  SPGFQRSTKLVFELASLLASNLKILPPPLDLVVAELSGGDGNGGGSRLWRGFGGGDYDGW 120

Query: 121 RGKRKKTPLLIGFLIVCGLVLLFVTDFEINVVCGVLGFAVFGVALIQLWQKIGISKDFVL 180
           RGKRKKTPLLIGFLIVCGLVLLFVTDFEINVVCGVLGFAVFGVALIQLWQKIGISKDFVL
Sbjct: 121 RGKRKKTPLLIGFLIVCGLVLLFVTDFEINVVCGVLGFAVFGVALIQLWQKIGISKDFVL 180

Query: 181 GFGLFGILIALGLRRSEVQRWVGKLGIYSSKRKSLRRKLK 221
           GFGLFGILIALGLRRSEVQRWVGKLGIYSSKRKSLRRKLK
Sbjct: 181 GFGLFGILIALGLRRSEVQRWVGKLGIYSSKRKSLRRKLK 220

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BLAST of CsaV3_2G005120 vs. ExPASy Swiss-Prot
Match: Q9MA95 (Putative pentatricopeptide repeat-containing protein At3g05240 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E82 PE=3 SV=2)

HSP 1 Score: 247.7 bits (631), Expect = 2.6e-64
Identity = 114/212 (53.77%), Postives = 156/212 (73.58%), Query Frame = 0


Query: 218 KLKVVKNIIPCSRLIDFCAN-SELGDIEYARTVFDQINQRTVYIWNSMIKGYCNGGDKFG 277
           K  V++N+IP SRLIDFC    E  ++ YAR+VF+ I+  +VYIWNSMI+GY N  +   
Sbjct: 31  KSSVIRNVIPLSRLIDFCTTCPETMNLSYARSVFESIDCPSVYIWNSMIRGYSNSPNPDK 90

Query: 278 ALFMYEEMQRKGFSPDHFTFPFVLKVCSIIDLLVYGQSVHNRIVKTGFELDVYTSSCLLN 337
           AL  Y+EM RKG+SPD+FTFP+VLK CS +  + +G  VH  +VKTGFE+++Y S+CLL+
Sbjct: 91  ALIFYQEMLRKGYSPDYFTFPYVLKACSGLRDIQFGSCVHGFVVKTGFEVNMYVSTCLLH 150

Query: 338 MYVSCGDLNSGLKVFEFIPKWNVVAWTSLIAGFVNNDQPKEALRLFKDMENEGVEPNEIT 397
           MY+ CG++N GL+VFE IP+WNVVAW SLI+GFVNN++  +A+  F++M++ GV+ NE  
Sbjct: 151 MYMCCGEVNYGLRVFEDIPQWNVVAWGSLISGFVNNNRFSDAIEAFREMQSNGVKANETI 210

Query: 398 MTTALAAAARCRDIHTGKLVHDRLRQLGFDPF 429
           M   L A  RC+DI TGK  H  L+ LGFDP+
Sbjct: 211 MVDLLVACGRCKDIVTGKWFHGFLQGLGFDPY 242

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BLAST of CsaV3_2G005120 vs. ExPASy Swiss-Prot
Match: O82380 (Pentatricopeptide repeat-containing protein At2g29760, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PCMP-H33 PE=2 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 2.2e-34
Identity = 72/189 (38.10%), Postives = 114/189 (60.32%), Query Frame = 0


Query: 229 SRLIDFCANSELGDIEYARTVFDQINQRTVYIWNSMIKGYCNGGDKFGALFMYEEM-QRK 288
           S+L    A S    +EYAR VFD+I +   + WN++I+ Y +G D   +++ + +M    
Sbjct: 66  SKLFAMAALSSFASLEYARKVFDEIPKPNSFAWNTLIRAYASGPDPVLSIWAFLDMVSES 125

Query: 289 GFSPDHFTFPFVLKVCSIIDLLVYGQSVHNRIVKTGFELDVYTSSCLLNMYVSCGDLNSG 348
              P+ +TFPF++K  + +  L  GQS+H   VK+    DV+ ++ L++ Y SCGDL+S 
Sbjct: 126 QCYPNKYTFPFLIKAAAEVSSLSLGQSLHGMAVKSAVGSDVFVANSLIHCYFSCGDLDSA 185

Query: 349 LKVFEFIPKWNVVAWTSLIAGFVNNDQPKEALRLFKDMENEGVEPNEITMTTALAAAARC 408
            KVF  I + +VV+W S+I GFV    P +AL LFK ME+E V+ + +TM   L+A A+ 
Sbjct: 186 CKVFTTIKEKDVVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKI 245

Query: 409 RDIHTGKLV 417
           R++  G+ V
Sbjct: 246 RNLEFGRQV 254

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BLAST of CsaV3_2G005120 vs. ExPASy Swiss-Prot
Match: Q9LTV8 (Pentatricopeptide repeat-containing protein At3g12770 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H43 PE=2 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 1.4e-33
Identity = 67/193 (34.72%), Postives = 111/193 (57.51%), Query Frame = 0


Query: 236 ANSELGDIEYARTVFDQINQRTVYIWNSMIKGYCNGGDKFGALFMYEEMQRKGFSPDHFT 295
           A+S  GDI +AR VFD + +  ++ WN++I+GY        AL MY  MQ    SPD FT
Sbjct: 62  ASSSFGDITFARQVFDDLPRPQIFPWNAIIRGYSRNNHFQDALLMYSNMQLARVSPDSFT 121

Query: 296 FPFVLKVCSIIDLLVYGQSVHNRIVKTGFELDVYTSSCLLNMYVSCGDLNSGLKVFEF-- 355
           FP +LK CS +  L  G+ VH ++ + GF+ DV+  + L+ +Y  C  L S   VFE   
Sbjct: 122 FPHLLKACSGLSHLQMGRFVHAQVFRLGFDADVFVQNGLIALYAKCRRLGSARTVFEGLP 181

Query: 356 IPKWNVVAWTSLIAGFVNNDQPKEALRLFKDMENEGVEPNEITMTTALAAAARCRDIHTG 415
           +P+  +V+WT++++ +  N +P EAL +F  M    V+P+ + + + L A    +D+  G
Sbjct: 182 LPERTIVSWTAIVSAYAQNGEPMEALEIFSQMRKMDVKPDWVALVSVLNAFTCLQDLKQG 241

Query: 416 KLVHDRLRQLGFD 427
           + +H  + ++G +
Sbjct: 242 RSIHASVVKMGLE 254

[Close]

BLAST of CsaV3_2G005120 vs. ExPASy Swiss-Prot
Match: A8MQA3 (Pentatricopeptide repeat-containing protein At4g21065 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H28 PE=2 SV=2)

HSP 1 Score: 143.3 bits (360), Expect = 7.0e-33
Identity = 65/184 (35.33%), Postives = 118/184 (64.13%), Query Frame = 0


Query: 243 IEYARTVFDQINQR-TVYIWNSMIKGYCNGGDKFGALFMYEEMQRKGF-SPDHFTFPFVL 302
           + YA  VF +I +   V+IWN++I+GY   G+   A  +Y EM+  G   PD  T+PF++
Sbjct: 69  MSYAHKVFSKIEKPINVFIWNTLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLI 128

Query: 303 KVCSIIDLLVYGQSVHNRIVKTGFELDVYTSSCLLNMYVSCGDLNSGLKVFEFIPKWNVV 362
           K  + +  +  G+++H+ ++++GF   +Y  + LL++Y +CGD+ S  KVF+ +P+ ++V
Sbjct: 129 KAVTTMADVRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLV 188

Query: 363 AWTSLIAGFVNNDQPKEALRLFKDMENEGVEPNEITMTTALAAAARCRDIHTGKLVHDRL 422
           AW S+I GF  N +P+EAL L+ +M ++G++P+  T+ + L+A A+   +  GK VH  +
Sbjct: 189 AWNSVINGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYM 248

Query: 423 RQLG 425
            ++G
Sbjct: 249 IKVG 252

[Close]

BLAST of CsaV3_2G005120 vs. ExPASy Swiss-Prot
Match: P93005 (Pentatricopeptide repeat-containing protein At2g33680 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E19 PE=3 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 7.7e-32
Identity = 91/283 (32.16%), Postives = 139/283 (49.12%), Query Frame = 0


Query: 184 LFGILIALGLRRSEVQRWVGKLG-----IYSSKRKSLRR---KLKVVKNIIPCSRLIDFC 243
           LF  + + G++ SE    VG L       Y  + K L     KL   +++   + L+D  
Sbjct: 309 LFSRMFSAGIKPSE-YTIVGVLNACSDICYLEEGKQLHSFLLKLGFERHLFATTALVDMY 368

Query: 244 ANSELGDIEYARTVFDQINQRTVYIWNSMIKGYCNGGDKFGALFMYEEMQRKGFSPDHFT 303
           A +  G +  AR  FD + +R V +W S+I GY    D   AL +Y  M+  G  P+  T
Sbjct: 369 AKA--GCLADARKGFDCLQERDVALWTSLISGYVQNSDNEEALILYRRMKTAGIIPNDPT 428

Query: 304 FPFVLKVCSIIDLLVYGQSVHNRIVKTGFELDVYTSSCLLNMYVSCGDLNSGLKVFEFIP 363
              VLK CS +  L  G+ VH   +K GF L+V   S L  MY  CG L  G  VF   P
Sbjct: 429 MASVLKACSSLATLELGKQVHGHTIKHGFGLEVPIGSALSTMYSKCGSLEDGNLVFRRTP 488

Query: 364 KWNVVAWTSLIAGFVNNDQPKEALRLFKDMENEGVEPNEITMTTALAAAARCRDIHTGKL 423
             +VV+W ++I+G  +N Q  EAL LF++M  EG+EP+++T    ++A +    +  G  
Sbjct: 489 NKDVVSWNAMISGLSHNGQGDEALELFEEMLAEGMEPDDVTFVNIISACSHKGFVERGWF 548

Query: 424 VHDRLR-QLGFDP--------FDTNSCFNEMKLARDMLKHKNI 450
             + +  Q+G DP         D  S   ++K A++ ++  NI
Sbjct: 549 YFNMMSDQIGLDPKVDHYACMVDLLSRAGQLKEAKEFIESANI 588

[Close]

BLAST of CsaV3_2G005120 vs. ExPASy TrEMBL
Match: A0A0A0LIL6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G021600 PE=4 SV=1)

HSP 1 Score: 456.4 bits (1173), Expect = 1.4e-124
Identity = 220/238 (92.44%), Postives = 222/238 (93.28%), Query Frame = 0


Query: 214 SLRRKLKVVKNIIPCSRLIDFCANSELGDIEYARTVFDQINQRTVYIWNSMIKGYCNGGD 273
           SL     VVKNIIPCSRLIDFCANSELGDIEYARTVFDQINQRTVYIWNSMIKGYCNGGD
Sbjct: 26  SLMITTSVVKNIIPCSRLIDFCANSELGDIEYARTVFDQINQRTVYIWNSMIKGYCNGGD 85

Query: 274 KFGALFMYEEMQRKGFSPDHFTFPFVLKVCSIIDLLVYGQSVHNRIVKTGFELDVYTSSC 333
           KFGALFMYEEMQRKGFSPDHFTFPFVLKVCSIIDLLVYGQSVHNRIVKTGFELDVYTSSC
Sbjct: 86  KFGALFMYEEMQRKGFSPDHFTFPFVLKVCSIIDLLVYGQSVHNRIVKTGFELDVYTSSC 145

Query: 334 LLNMYVSCGDLNSGLKVFEFIPKWNVVAWTSLIAGFVNNDQPKEALRLFKDMENEGVEPN 393
           LLNMYVSCGDLNSGLKVFEFIPKWNVVAWTSLIAGFVNNDQPKEALRLFKDMENEGVEPN
Sbjct: 146 LLNMYVSCGDLNSGLKVFEFIPKWNVVAWTSLIAGFVNNDQPKEALRLFKDMENEGVEPN 205

Query: 394 EITMTTALAAAARCRDIHTGKLVHDRLRQLGFDPFDTNSCFNEMKLARDMLKHKNIGK 452
           EITMTTALAAAARCRDIHTGKLVHDRLRQLGFDPFDTNSCFN +     M  +   GK
Sbjct: 206 EITMTTALAAAARCRDIHTGKLVHDRLRQLGFDPFDTNSCFNVILATAIMDMYAKCGK 263

[Close]

BLAST of CsaV3_2G005120 vs. ExPASy TrEMBL
Match: A0A5A7TWI8 (Putative pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold385G00130 PE=4 SV=1)

HSP 1 Score: 431.4 bits (1108), Expect = 4.7e-117
Identity = 210/238 (88.24%), Postives = 214/238 (89.92%), Query Frame = 0


Query: 214 SLRRKLKVVKNIIPCSRLIDFCANSELGDIEYARTVFDQINQRTVYIWNSMIKGYCNGGD 273
           SL  K  VVKNIIPCSRLIDFCANSELGDIEYARTVFDQ +Q TVY+WNSMIKGYCNGGD
Sbjct: 26  SLMIKTSVVKNIIPCSRLIDFCANSELGDIEYARTVFDQTDQLTVYVWNSMIKGYCNGGD 85

Query: 274 KFGALFMYEEMQRKGFSPDHFTFPFVLKVCSIIDLLVYGQSVHNRIVKTGFELDVYTSSC 333
           KFGALFMYEEMQRKGF PDHFTFPFVLKVCS IDLLVYGQSVHNRIVKTGFELDVYTSSC
Sbjct: 86  KFGALFMYEEMQRKGFYPDHFTFPFVLKVCSAIDLLVYGQSVHNRIVKTGFELDVYTSSC 145

Query: 334 LLNMYVSCGDLNSGLKVFEFIPKWNVVAWTSLIAGFVNNDQPKEALRLFKDMENEGVEPN 393
           LLNMYVSCGDLNSGLKVFEFIPKWNVVAWTSLIAGFVNNDQPKEALRLFKDMENEGVEPN
Sbjct: 146 LLNMYVSCGDLNSGLKVFEFIPKWNVVAWTSLIAGFVNNDQPKEALRLFKDMENEGVEPN 205

Query: 394 EITMTTALAAAARCRDIHTGKLVHDRLRQLGFDPFDTNSCFNEMKLARDMLKHKNIGK 452
           EITMTTALAAAARCRDIHTGKLV  RLRQLG DPF TNS FN +     M  +   GK
Sbjct: 206 EITMTTALAAAARCRDIHTGKLVRYRLRQLGLDPFHTNSRFNVILATAIMDMYAKCGK 263

[Close]

BLAST of CsaV3_2G005120 vs. ExPASy TrEMBL
Match: Q84KA5 (Selenium binding protein-like protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 431.4 bits (1108), Expect = 4.7e-117
Identity = 210/238 (88.24%), Postives = 214/238 (89.92%), Query Frame = 0


Query: 214 SLRRKLKVVKNIIPCSRLIDFCANSELGDIEYARTVFDQINQRTVYIWNSMIKGYCNGGD 273
           SL  K  VVKNIIPCSRLIDFCANSELGDIEYARTVFDQ +Q TVY+WNSMIKGYCNGGD
Sbjct: 26  SLMIKTSVVKNIIPCSRLIDFCANSELGDIEYARTVFDQTDQLTVYVWNSMIKGYCNGGD 85

Query: 274 KFGALFMYEEMQRKGFSPDHFTFPFVLKVCSIIDLLVYGQSVHNRIVKTGFELDVYTSSC 333
           KFGALFMYEEMQRKGF PDHFTFPFVLKVCS IDLLVYGQSVHNRIVKTGFELDVYTSSC
Sbjct: 86  KFGALFMYEEMQRKGFYPDHFTFPFVLKVCSAIDLLVYGQSVHNRIVKTGFELDVYTSSC 145

Query: 334 LLNMYVSCGDLNSGLKVFEFIPKWNVVAWTSLIAGFVNNDQPKEALRLFKDMENEGVEPN 393
           LLNMYVSCGDLNSGLKVFEFIPKWNVVAWTSLIAGFVNNDQPKEALRLFKDMENEGVEPN
Sbjct: 146 LLNMYVSCGDLNSGLKVFEFIPKWNVVAWTSLIAGFVNNDQPKEALRLFKDMENEGVEPN 205

Query: 394 EITMTTALAAAARCRDIHTGKLVHDRLRQLGFDPFDTNSCFNEMKLARDMLKHKNIGK 452
           EITMTTALAAAARCRDIHTGKLV  RLRQLG DPF TNS FN +     M  +   GK
Sbjct: 206 EITMTTALAAAARCRDIHTGKLVRYRLRQLGLDPFHTNSRFNVILATAIMDMYAKCGK 263

[Close]

BLAST of CsaV3_2G005120 vs. ExPASy TrEMBL
Match: A0A1S3C0R4 (putative pentatricopeptide repeat-containing protein At3g05240 OS=Cucumis melo OX=3656 GN=LOC103495159 PE=4 SV=1)

HSP 1 Score: 431.4 bits (1108), Expect = 4.7e-117
Identity = 210/238 (88.24%), Postives = 214/238 (89.92%), Query Frame = 0


Query: 214 SLRRKLKVVKNIIPCSRLIDFCANSELGDIEYARTVFDQINQRTVYIWNSMIKGYCNGGD 273
           SL  K  VVKNIIPCSRLIDFCANSELGDIEYARTVFDQ +Q TVY+WNSMIKGYCNGGD
Sbjct: 26  SLMIKTSVVKNIIPCSRLIDFCANSELGDIEYARTVFDQTDQLTVYVWNSMIKGYCNGGD 85

Query: 274 KFGALFMYEEMQRKGFSPDHFTFPFVLKVCSIIDLLVYGQSVHNRIVKTGFELDVYTSSC 333
           KFGALFMYEEMQRKGF PDHFTFPFVLKVCS IDLLVYGQSVHNRIVKTGFELDVYTSSC
Sbjct: 86  KFGALFMYEEMQRKGFYPDHFTFPFVLKVCSAIDLLVYGQSVHNRIVKTGFELDVYTSSC 145

Query: 334 LLNMYVSCGDLNSGLKVFEFIPKWNVVAWTSLIAGFVNNDQPKEALRLFKDMENEGVEPN 393
           LLNMYVSCGDLNSGLKVFEFIPKWNVVAWTSLIAGFVNNDQPKEALRLFKDMENEGVEPN
Sbjct: 146 LLNMYVSCGDLNSGLKVFEFIPKWNVVAWTSLIAGFVNNDQPKEALRLFKDMENEGVEPN 205

Query: 394 EITMTTALAAAARCRDIHTGKLVHDRLRQLGFDPFDTNSCFNEMKLARDMLKHKNIGK 452
           EITMTTALAAAARCRDIHTGKLV  RLRQLG DPF TNS FN +     M  +   GK
Sbjct: 206 EITMTTALAAAARCRDIHTGKLVRYRLRQLGLDPFHTNSRFNVILATAIMDMYAKCGK 263

[Close]

BLAST of CsaV3_2G005120 vs. ExPASy TrEMBL
Match: A0A5D3D461 (Putative pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold456G00330 PE=4 SV=1)

HSP 1 Score: 430.3 bits (1105), Expect = 1.1e-116
Identity = 209/238 (87.82%), Postives = 215/238 (90.34%), Query Frame = 0


Query: 214 SLRRKLKVVKNIIPCSRLIDFCANSELGDIEYARTVFDQINQRTVYIWNSMIKGYCNGGD 273
           SL  K  VVKNIIPCSRLIDFCANSELGDIEYARTVFD+ +Q TVY+WNSMIKGYCNGGD
Sbjct: 26  SLMIKTSVVKNIIPCSRLIDFCANSELGDIEYARTVFDRTDQLTVYVWNSMIKGYCNGGD 85

Query: 274 KFGALFMYEEMQRKGFSPDHFTFPFVLKVCSIIDLLVYGQSVHNRIVKTGFELDVYTSSC 333
           KFGALFMYEEMQRKGF PDHFTFPFVLKVCS+IDLLVYGQSVHNRIVKTGFELDVYTSSC
Sbjct: 86  KFGALFMYEEMQRKGFYPDHFTFPFVLKVCSVIDLLVYGQSVHNRIVKTGFELDVYTSSC 145

Query: 334 LLNMYVSCGDLNSGLKVFEFIPKWNVVAWTSLIAGFVNNDQPKEALRLFKDMENEGVEPN 393
           LLNMYVSCGDLNSGLKVFEFIPKWNVVAWTSLIAGFVNNDQPKEALRLFKDMENEGVEPN
Sbjct: 146 LLNMYVSCGDLNSGLKVFEFIPKWNVVAWTSLIAGFVNNDQPKEALRLFKDMENEGVEPN 205

Query: 394 EITMTTALAAAARCRDIHTGKLVHDRLRQLGFDPFDTNSCFNEMKLARDMLKHKNIGK 452
           EITMTTALAAAARCRDIHTGKLV  RLRQLG DPF TNS FN +     M  +   GK
Sbjct: 206 EITMTTALAAAARCRDIHTGKLVLYRLRQLGLDPFHTNSRFNVILATAIMDMYAKCGK 263

[Close]

BLAST of CsaV3_2G005120 vs. TAIR 10
Match: AT3G05240.1 (mitochondrial editing factor 19 )

HSP 1 Score: 247.7 bits (631), Expect = 1.9e-65
Identity = 114/212 (53.77%), Postives = 156/212 (73.58%), Query Frame = 0


Query: 218 KLKVVKNIIPCSRLIDFCAN-SELGDIEYARTVFDQINQRTVYIWNSMIKGYCNGGDKFG 277
           K  V++N+IP SRLIDFC    E  ++ YAR+VF+ I+  +VYIWNSMI+GY N  +   
Sbjct: 31  KSSVIRNVIPLSRLIDFCTTCPETMNLSYARSVFESIDCPSVYIWNSMIRGYSNSPNPDK 90

Query: 278 ALFMYEEMQRKGFSPDHFTFPFVLKVCSIIDLLVYGQSVHNRIVKTGFELDVYTSSCLLN 337
           AL  Y+EM RKG+SPD+FTFP+VLK CS +  + +G  VH  +VKTGFE+++Y S+CLL+
Sbjct: 91  ALIFYQEMLRKGYSPDYFTFPYVLKACSGLRDIQFGSCVHGFVVKTGFEVNMYVSTCLLH 150

Query: 338 MYVSCGDLNSGLKVFEFIPKWNVVAWTSLIAGFVNNDQPKEALRLFKDMENEGVEPNEIT 397
           MY+ CG++N GL+VFE IP+WNVVAW SLI+GFVNN++  +A+  F++M++ GV+ NE  
Sbjct: 151 MYMCCGEVNYGLRVFEDIPQWNVVAWGSLISGFVNNNRFSDAIEAFREMQSNGVKANETI 210

Query: 398 MTTALAAAARCRDIHTGKLVHDRLRQLGFDPF 429
           M   L A  RC+DI TGK  H  L+ LGFDP+
Sbjct: 211 MVDLLVACGRCKDIVTGKWFHGFLQGLGFDPY 242

[Close]

BLAST of CsaV3_2G005120 vs. TAIR 10
Match: AT2G29760.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 148.3 bits (373), Expect = 1.5e-35
Identity = 72/189 (38.10%), Postives = 114/189 (60.32%), Query Frame = 0


Query: 229 SRLIDFCANSELGDIEYARTVFDQINQRTVYIWNSMIKGYCNGGDKFGALFMYEEM-QRK 288
           S+L    A S    +EYAR VFD+I +   + WN++I+ Y +G D   +++ + +M    
Sbjct: 66  SKLFAMAALSSFASLEYARKVFDEIPKPNSFAWNTLIRAYASGPDPVLSIWAFLDMVSES 125

Query: 289 GFSPDHFTFPFVLKVCSIIDLLVYGQSVHNRIVKTGFELDVYTSSCLLNMYVSCGDLNSG 348
              P+ +TFPF++K  + +  L  GQS+H   VK+    DV+ ++ L++ Y SCGDL+S 
Sbjct: 126 QCYPNKYTFPFLIKAAAEVSSLSLGQSLHGMAVKSAVGSDVFVANSLIHCYFSCGDLDSA 185

Query: 349 LKVFEFIPKWNVVAWTSLIAGFVNNDQPKEALRLFKDMENEGVEPNEITMTTALAAAARC 408
            KVF  I + +VV+W S+I GFV    P +AL LFK ME+E V+ + +TM   L+A A+ 
Sbjct: 186 CKVFTTIKEKDVVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKI 245

Query: 409 RDIHTGKLV 417
           R++  G+ V
Sbjct: 246 RNLEFGRQV 254

[Close]

BLAST of CsaV3_2G005120 vs. TAIR 10
Match: AT3G12770.1 (mitochondrial editing factor 22 )

HSP 1 Score: 145.6 bits (366), Expect = 1.0e-34
Identity = 67/193 (34.72%), Postives = 111/193 (57.51%), Query Frame = 0


Query: 236 ANSELGDIEYARTVFDQINQRTVYIWNSMIKGYCNGGDKFGALFMYEEMQRKGFSPDHFT 295
           A+S  GDI +AR VFD + +  ++ WN++I+GY        AL MY  MQ    SPD FT
Sbjct: 62  ASSSFGDITFARQVFDDLPRPQIFPWNAIIRGYSRNNHFQDALLMYSNMQLARVSPDSFT 121

Query: 296 FPFVLKVCSIIDLLVYGQSVHNRIVKTGFELDVYTSSCLLNMYVSCGDLNSGLKVFEF-- 355
           FP +LK CS +  L  G+ VH ++ + GF+ DV+  + L+ +Y  C  L S   VFE   
Sbjct: 122 FPHLLKACSGLSHLQMGRFVHAQVFRLGFDADVFVQNGLIALYAKCRRLGSARTVFEGLP 181

Query: 356 IPKWNVVAWTSLIAGFVNNDQPKEALRLFKDMENEGVEPNEITMTTALAAAARCRDIHTG 415
           +P+  +V+WT++++ +  N +P EAL +F  M    V+P+ + + + L A    +D+  G
Sbjct: 182 LPERTIVSWTAIVSAYAQNGEPMEALEIFSQMRKMDVKPDWVALVSVLNAFTCLQDLKQG 241

Query: 416 KLVHDRLRQLGFD 427
           + +H  + ++G +
Sbjct: 242 RSIHASVVKMGLE 254

[Close]

BLAST of CsaV3_2G005120 vs. TAIR 10
Match: AT4G21065.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 143.3 bits (360), Expect = 5.0e-34
Identity = 65/184 (35.33%), Postives = 118/184 (64.13%), Query Frame = 0


Query: 243 IEYARTVFDQINQR-TVYIWNSMIKGYCNGGDKFGALFMYEEMQRKGF-SPDHFTFPFVL 302
           + YA  VF +I +   V+IWN++I+GY   G+   A  +Y EM+  G   PD  T+PF++
Sbjct: 69  MSYAHKVFSKIEKPINVFIWNTLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLI 128

Query: 303 KVCSIIDLLVYGQSVHNRIVKTGFELDVYTSSCLLNMYVSCGDLNSGLKVFEFIPKWNVV 362
           K  + +  +  G+++H+ ++++GF   +Y  + LL++Y +CGD+ S  KVF+ +P+ ++V
Sbjct: 129 KAVTTMADVRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLV 188

Query: 363 AWTSLIAGFVNNDQPKEALRLFKDMENEGVEPNEITMTTALAAAARCRDIHTGKLVHDRL 422
           AW S+I GF  N +P+EAL L+ +M ++G++P+  T+ + L+A A+   +  GK VH  +
Sbjct: 189 AWNSVINGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYM 248

Query: 423 RQLG 425
            ++G
Sbjct: 249 IKVG 252

[Close]

BLAST of CsaV3_2G005120 vs. TAIR 10
Match: AT2G33680.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 139.8 bits (351), Expect = 5.5e-33
Identity = 91/283 (32.16%), Postives = 139/283 (49.12%), Query Frame = 0


Query: 184 LFGILIALGLRRSEVQRWVGKLG-----IYSSKRKSLRR---KLKVVKNIIPCSRLIDFC 243
           LF  + + G++ SE    VG L       Y  + K L     KL   +++   + L+D  
Sbjct: 309 LFSRMFSAGIKPSE-YTIVGVLNACSDICYLEEGKQLHSFLLKLGFERHLFATTALVDMY 368

Query: 244 ANSELGDIEYARTVFDQINQRTVYIWNSMIKGYCNGGDKFGALFMYEEMQRKGFSPDHFT 303
           A +  G +  AR  FD + +R V +W S+I GY    D   AL +Y  M+  G  P+  T
Sbjct: 369 AKA--GCLADARKGFDCLQERDVALWTSLISGYVQNSDNEEALILYRRMKTAGIIPNDPT 428

Query: 304 FPFVLKVCSIIDLLVYGQSVHNRIVKTGFELDVYTSSCLLNMYVSCGDLNSGLKVFEFIP 363
              VLK CS +  L  G+ VH   +K GF L+V   S L  MY  CG L  G  VF   P
Sbjct: 429 MASVLKACSSLATLELGKQVHGHTIKHGFGLEVPIGSALSTMYSKCGSLEDGNLVFRRTP 488

Query: 364 KWNVVAWTSLIAGFVNNDQPKEALRLFKDMENEGVEPNEITMTTALAAAARCRDIHTGKL 423
             +VV+W ++I+G  +N Q  EAL LF++M  EG+EP+++T    ++A +    +  G  
Sbjct: 489 NKDVVSWNAMISGLSHNGQGDEALELFEEMLAEGMEPDDVTFVNIISACSHKGFVERGWF 548

Query: 424 VHDRLR-QLGFDP--------FDTNSCFNEMKLARDMLKHKNI 450
             + +  Q+G DP         D  S   ++K A++ ++  NI
Sbjct: 549 YFNMMSDQIGLDPKVDHYACMVDLLSRAGQLKEAKEFIESANI 588

The following BLAST results are available for this feature:

BLAST of CsaV3_2G005120 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8651593.1	8.8e-267	100.00	hypothetical protein Csa_023453 [Cucumis sativus]	[more]
XP_004139361.1	2.8e-124	92.44	putative pentatricopeptide repeat-containing protein At3g05240 [Cucumis sativus]	[more]
XP_008454853.1	9.8e-117	88.24	PREDICTED: putative pentatricopeptide repeat-containing protein At3g05240 [Cucum...	[more]
TYK18322.1	2.2e-116	87.82	putative pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa]	[more]
XP_004139360.1	9.1e-115	100.00	uncharacterized protein LOC101213268 [Cucumis sativus]	[more]

BLAST of CsaV3_2G005120 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9MA95	2.6e-64	53.77	Putative pentatricopeptide repeat-containing protein At3g05240 OS=Arabidopsis th...	[more]
O82380	2.2e-34	38.10	Pentatricopeptide repeat-containing protein At2g29760, chloroplastic OS=Arabidop...	[more]
Q9LTV8	1.4e-33	34.72	Pentatricopeptide repeat-containing protein At3g12770 OS=Arabidopsis thaliana OX...	[more]
A8MQA3	7.0e-33	35.33	Pentatricopeptide repeat-containing protein At4g21065 OS=Arabidopsis thaliana OX...	[more]
P93005	7.7e-32	32.16	Pentatricopeptide repeat-containing protein At2g33680 OS=Arabidopsis thaliana OX...	[more]

BLAST of CsaV3_2G005120 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LIL6	1.4e-124	92.44	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G021600 PE=4 SV=1	[more]
A0A5A7TWI8	4.7e-117	88.24	Putative pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa...	[more]
Q84KA5	4.7e-117	88.24	Selenium binding protein-like protein OS=Cucumis melo subsp. melo OX=412675 PE=4...	[more]
A0A1S3C0R4	4.7e-117	88.24	putative pentatricopeptide repeat-containing protein At3g05240 OS=Cucumis melo O...	[more]
A0A5D3D461	1.1e-116	87.82	Putative pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa...	[more]

BLAST of CsaV3_2G005120 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G05240.1	1.9e-65	53.77	mitochondrial editing factor 19	[more]
AT2G29760.1	1.5e-35	38.10	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT3G12770.1	1.0e-34	34.72	mitochondrial editing factor 22	[more]
AT4G21065.1	5.0e-34	35.33	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT2G33680.1	5.5e-33	32.16	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002885	Pentatricopeptide repeat	PFAM	PF13041	PPR_2	coord: 358..403 e-value: 3.8E-13 score: 49.4 coord: 257..303 e-value: 3.3E-10 score: 40.0
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 360..394 e-value: 2.2E-8 score: 31.8 coord: 259..292 e-value: 2.2E-8 score: 31.8
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 257..291 score: 12.189023
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 358..392 score: 12.572669
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 212..307 e-value: 2.5E-16 score: 61.5
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 308..454 e-value: 8.7E-25 score: 89.8
None	No IPR available	PANTHER	PTHR47928	REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED	coord: 242..403
None	No IPR available	PANTHER	PTHR47928	REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED	coord: 356..426
None	No IPR available	PANTHER	PTHR47928:SF124	PENTATRICOPEPTIDE (PPR) REPEAT PROTEIN	coord: 356..426 coord: 242..403

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_2G005120.1	CsaV3_2G005120.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding