CsaV3_2G004590 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_2G004590
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr2: 2501406 .. 2502207 (-)
RNA-Seq ExpressionCsaV3_2G004590
SyntenyCsaV3_2G004590
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
CCCCGGACACACATCCTACACACCTCTTGATTTAAGAAAGACCTAAAGTTAGAGATTTATCAATCGATAATGTTGCTCAGTACCCAACCAAAGGGCTACTGTGGTACCAATAAAAAAGGCGGCTGTCACTGAGATGAGAAAAGGAGGCCGGAAGTGAATGCTTATATGGGCTTGTGTGGGTTATGGCAGTGGTGTGTTGGTGGTGGTGGCGGCAGAAGGGGAGGATTAAAGTGGTTTCGTTGTATCAAGGAGGAGGAGATTGAGGAGGCTTTGCTGGATGTGGAGTGTACGATGTTGATGAGGTCAGAGATTTGGACGGAGTTGGTGGTGAGGTTGCCAACAGCATACTGTCTGAGACAGTCATGAAGAGACAATGCGGGAGTAGATGGTGGTGGAATACCATATGCAGGTGGAGAGTGGAGCACCATATAGTTAAGGAGAGGGTGGCAAGAGAGATGCAATCGGAAATTGTGGAATCAAACGGTTATGGAGGTGACTACTGTGGTGGCAACGAAAAACTTGGTGGGGTTTCCGATGAGATGAGGCGTAGTTGTGGAATCTATTCAGAGTTAGACAATTGTTACATTGGTGGCTATGACGAACTATTGGATGAAGAATTTGAAGCTGGGATATTCATGTCTTAAAGGAAAGGAAGAATTTGAAGTTGGGATATTCATGTGTTAGAGGAAGTGAGAAGATGAACAAATGTGGATTTGTTGATATCACTTCGTAAATCTAATAGGATTGATGAGGTGAAGAATAAAATAATAATAATTTTATTAAATGTTTATTTTGTTTTTAT

mRNA sequence

ATGAAGAGACAATGCGGGAGTAGATGGTGGTGGAATACCATATGCAGGTGGAGAGTGGAGCACCATATAGTTAAGGAGAGGGTGGCAAGAGAGATGCAATCGGAAATTGTGGAATCAAACGGTTATGGAGGTGACTACTGTGGTGGCAACGAAAAACTTGGTGGGGTTTCCGATGAGATGAGGCGTAGTTGTGGAATCTATTCAGAGTTAGACAATTGTTACATTGGTGGCTATGACGAACTATTGGATGAAGAATTTGAAGCTGGGATATTCATGTCTTAA

Coding sequence (CDS)

ATGAAGAGACAATGCGGGAGTAGATGGTGGTGGAATACCATATGCAGGTGGAGAGTGGAGCACCATATAGTTAAGGAGAGGGTGGCAAGAGAGATGCAATCGGAAATTGTGGAATCAAACGGTTATGGAGGTGACTACTGTGGTGGCAACGAAAAACTTGGTGGGGTTTCCGATGAGATGAGGCGTAGTTGTGGAATCTATTCAGAGTTAGACAATTGTTACATTGGTGGCTATGACGAACTATTGGATGAAGAATTTGAAGCTGGGATATTCATGTCTTAA

Protein sequence

MKRQCGSRWWWNTICRWRVEHHIVKERVAREMQSEIVESNGYGGDYCGGNEKLGGVSDEMRRSCGIYSELDNCYIGGYDELLDEEFEAGIFMS*
Homology
[Close]
BLAST of CsaV3_2G004590 vs. NCBI nr
Match: KAE8651572.1 (hypothetical protein Csa_019247 [Cucumis sativus])

HSP 1 Score: 207.6 bits (527), Expect = 4.7e-50
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 0 

Query: 1  MKRQCGSRWWWNTICRWRVEHHIVKERVAREMQSEIVESNGYGGDYCGGNEKLGGVSDEM 60
          MKRQCGSRWWWNTICRWRVEHHIVKERVAREMQSEIVESNGYGGDYCGGNEKLGGVSDEM
Sbjct: 1  MKRQCGSRWWWNTICRWRVEHHIVKERVAREMQSEIVESNGYGGDYCGGNEKLGGVSDEM 60

Query: 61 RRSCGIYSELDNCYIGGYDELLDEEFEAGIFMS 94
          RRSCGIYSELDNCYIGGYDELLDEEFEAGIFMS
Sbjct: 61 RRSCGIYSELDNCYIGGYDELLDEEFEAGIFMS 93

[Close]
BLAST of CsaV3_2G004590 vs. NCBI nr
Match: KAE8651575.1 (hypothetical protein Csa_023483 [Cucumis sativus])

HSP 1 Score: 172.6 bits (436), Expect = 1.7e-39
Identity = 80/87 (91.95%), Postives = 81/87 (93.10%), Query Frame = 0 

Query: 7   SRWWWNTICRWRVEHHIVKERVAREMQSEIVESNGYGGDYCGGNEKLGGVSDEMRRSCGI 66
           S  W   + RWRVEHHIVKERVAREMQSEIVESNGYGGDYCGGNEKLGGVSDEMRRSCGI
Sbjct: 47  SEIWTELVVRWRVEHHIVKERVAREMQSEIVESNGYGGDYCGGNEKLGGVSDEMRRSCGI 106

Query: 67  YSELDNCYIGGYDELLDEEFEAGIFMS 94
           YSELDNCYIGGYDELLDEEFEAGIFMS
Sbjct: 107 YSELDNCYIGGYDELLDEEFEAGIFMS 133

The following BLAST results are available for this feature:
BLAST of CsaV3_2G004590 vs. NCBI nr
Match NameE-valueIdentityDescription
KAE8651572.14.7e-50100.00hypothetical protein Csa_019247 [Cucumis sativus][more]
KAE8651575.11.7e-3991.95hypothetical protein Csa_023483 [Cucumis sativus][more]
BLAST of CsaV3_2G004590 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_2G004590 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_2G004590 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_2G004590.1CsaV3_2G004590.1mRNA