CsaV3_2G004340 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_2G004340
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	40S ribosomal protein S24
Location	chr2: 2305376 .. 2306594 (+)
RNA-Seq Expression	CsaV3_2G004340
Synteny	CsaV3_2G004340

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGACAAAGCAGTCACCATTCGGACCAGGAAGTTCATGACCAACAGGCTTCTCTCCAGGAAGCAATTCGTGAGTCCTTTGTCTTTGCTTTCCGCATTACTTTATGTTTATTGATTCTGCGAGGTTTGATTTTTCTCTTGGCGTCTCTTTTTTTCTTTTTTCCATGTAAGTTCCTTGTTCGGTTTTGATTTTGGACTTAGTTTCTGGATTAGGGTGTAGTGCTAGTTGCATTTTATTTGGTGCTGAAAATGGTTCGGTTTTGTATTTCATTTTGAGTTTAGGGTTTTAGTGTTGCTTATCTAATTGAAATGAAAATCACTTTCGGGTTAGCGGTATATGGTCCTTGATTGGCTATTTGTTTATAATCTTTCTGTTTCGTGATTTATGCAGGTCATTGATGTTCTTCACCCCGGCAGACCCAACGTCTCAAAGGTAATCTATTTTTCGTGTTATTTTTTTCCCCATGAAGTTATCGAGTGTTTATTGCATTTACAAAATCTGTATGAATAATTAACTTTTCAATCTATAGTATTTTTTCTCACTGGATCCTTAGTGTTTCGTGTTGTATTTTAATCCCATTTTCATTGAAATTGGAAAATCTATCTTTTCTGGCACTTGTATGGAATAAAAGGGCATTCATTTGGCACCCATGTTGCTGATATTTTGCTATGCTTTGGCTTATGGTGATCATTATGTTGTATGTTTCTATTTCTTGGTCTTAAGGCTGAGCTGAAAGAGAAGCTGGGCAGAATCTATGATGTGAAGGATCCAAATGCCATCTTTGTTTTCAAATTCAGAACTCACTTCGGTGGTGGAAAATCCACTGGGTTCGGTTTGATCTATGATTCCGTCGAGAATGCAAAGAAGTACGAGCCAAAATACAGGCTAATCAGGGTAATGTTACAATGTCCTTTTAAGCAAAACTTCAATTATTGTGCTCTTAAGATTTGTTTCATAGAATGACATTACTCAAGCATGCTTCTTATACTTCATTATCATAGAATGGCCTCGACACCAAGGTAGAAAAATCAAGAAAGCAAATGAAGGAAAGGAAGAACAGGGCAAAGAAAATCCGAGGTGTTAAGAAGGTAAGTGAACAAATTCTTATAGCTAATCGATGAATGATTCTGAAATGATAGTTGCCTTTGATTTACATTTTTATATCTTCCTACAGACCAAGGCTTCAGACGCAGCAAAAGGAGGAAAGAAGAAATAA

mRNA sequence

ATGGCGGACAAAGCAGTCACCATTCGGACCAGGAAGTTCATGACCAACAGGCTTCTCTCCAGGAAGCAATTCGTCATTGATGTTCTTCACCCCGGCAGACCCAACGTCTCAAAGGCTGAGCTGAAAGAGAAGCTGGGCAGAATCTATGATGTGAAGGATCCAAATGCCATCTTTGTTTTCAAATTCAGAACTCACTTCGGTGGTGGAAAATCCACTGGGTTCGGTTTGATCTATGATTCCGTCGAGAATGCAAAGAAGTACGAGCCAAAATACAGGCTAATCAGGAATGGCCTCGACACCAAGGTAGAAAAATCAAGAAAGCAAATGAAGGAAAGGAAGAACAGGGCAAAGAAAATCCGAGGTGTTAAGAAGACCAAGGCTTCAGACGCAGCAAAAGGAGGAAAGAAGAAATAA

Coding sequence (CDS)

ATGGCGGACAAAGCAGTCACCATTCGGACCAGGAAGTTCATGACCAACAGGCTTCTCTCCAGGAAGCAATTCGTCATTGATGTTCTTCACCCCGGCAGACCCAACGTCTCAAAGGCTGAGCTGAAAGAGAAGCTGGGCAGAATCTATGATGTGAAGGATCCAAATGCCATCTTTGTTTTCAAATTCAGAACTCACTTCGGTGGTGGAAAATCCACTGGGTTCGGTTTGATCTATGATTCCGTCGAGAATGCAAAGAAGTACGAGCCAAAATACAGGCTAATCAGGAATGGCCTCGACACCAAGGTAGAAAAATCAAGAAAGCAAATGAAGGAAAGGAAGAACAGGGCAAAGAAAATCCGAGGTGTTAAGAAGACCAAGGCTTCAGACGCAGCAAAAGGAGGAAAGAAGAAATAA

Protein sequence

MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLGRIYDVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVKKTKASDAAKGGKKK*

Homology

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BLAST of CsaV3_2G004340 vs. NCBI nr
Match: XP_004139219.1 (40S ribosomal protein S24-1 [Cucumis sativus] >KGN60830.1 hypothetical protein Csa_019211 [Cucumis sativus])

HSP 1 Score: 263.5 bits (672), Expect = 1.1e-66
Identity = 137/137 (100.00%), Postives = 137/137 (100.00%), Query Frame = 0


Query: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLGRIYDVKDPNAIFVF 60
           MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLGRIYDVKDPNAIFVF
Sbjct: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLGRIYDVKDPNAIFVF 60

Query: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120
           KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR
Sbjct: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120

Query: 121 GVKKTKASDAAKGGKKK 138
           GVKKTKASDAAKGGKKK
Sbjct: 121 GVKKTKASDAAKGGKKK 137

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BLAST of CsaV3_2G004340 vs. NCBI nr
Match: XP_022937688.1 (40S ribosomal protein S24-1-like [Cucurbita moschata] >XP_022966001.1 40S ribosomal protein S24-1 [Cucurbita maxima] >XP_023536700.1 40S ribosomal protein S24-1-like [Cucurbita pepo subsp. pepo] >KAG6586294.1 40S ribosomal protein S24-2, partial [Cucurbita argyrosperma subsp. sororia] >KAG7021142.1 40S ribosomal protein S24-2 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 261.2 bits (666), Expect = 5.2e-66
Identity = 136/137 (99.27%), Postives = 136/137 (99.27%), Query Frame = 0


Query: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLGRIYDVKDPNAIFVF 60
           MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLGRIYDVKDPNAIFVF
Sbjct: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLGRIYDVKDPNAIFVF 60

Query: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120
           KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR
Sbjct: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120

Query: 121 GVKKTKASDAAKGGKKK 138
           GVKKTKASDAAK GKKK
Sbjct: 121 GVKKTKASDAAKAGKKK 137

[Close]

BLAST of CsaV3_2G004340 vs. NCBI nr
Match: XP_022143165.1 (40S ribosomal protein S24-1 [Momordica charantia])

HSP 1 Score: 258.8 bits (660), Expect = 2.6e-65
Identity = 135/137 (98.54%), Postives = 135/137 (98.54%), Query Frame = 0


Query: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLGRIYDVKDPNAIFVF 60
           MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKL RIYDVKDPNAIFVF
Sbjct: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLSRIYDVKDPNAIFVF 60

Query: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120
           KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR
Sbjct: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120

Query: 121 GVKKTKASDAAKGGKKK 138
           GVKKTKASDAAK GKKK
Sbjct: 121 GVKKTKASDAAKAGKKK 137

[Close]

BLAST of CsaV3_2G004340 vs. NCBI nr
Match: XP_022999263.1 (40S ribosomal protein S24-1-like [Cucurbita maxima])

HSP 1 Score: 258.8 bits (660), Expect = 2.6e-65
Identity = 134/137 (97.81%), Postives = 136/137 (99.27%), Query Frame = 0


Query: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLGRIYDVKDPNAIFVF 60
           MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLGRIYDVKDPN+IFVF
Sbjct: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLGRIYDVKDPNSIFVF 60

Query: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120
           KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR
Sbjct: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120

Query: 121 GVKKTKASDAAKGGKKK 138
           GVKKTKASD+AK GKKK
Sbjct: 121 GVKKTKASDSAKAGKKK 137

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BLAST of CsaV3_2G004340 vs. NCBI nr
Match: XP_008455742.1 (PREDICTED: 40S ribosomal protein S24-1 [Cucumis melo] >XP_038889626.1 40S ribosomal protein S24-1 [Benincasa hispida] >ADN33912.1 40S ribosomal protein s24 [Cucumis melo subsp. melo] >KAA0063627.1 40S ribosomal protein S24-1 [Cucumis melo var. makuwa] >TYK18399.1 40S ribosomal protein S24-1 [Cucumis melo var. makuwa])

HSP 1 Score: 258.5 bits (659), Expect = 3.4e-65
Identity = 134/137 (97.81%), Postives = 135/137 (98.54%), Query Frame = 0


Query: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLGRIYDVKDPNAIFVF 60
           MADKAVTIRTRKFMTNRLLSRKQF+IDVLHPGRPNVSKAELKEKL RIYDVKDPNAIFVF
Sbjct: 1   MADKAVTIRTRKFMTNRLLSRKQFIIDVLHPGRPNVSKAELKEKLARIYDVKDPNAIFVF 60

Query: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120
           KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR
Sbjct: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120

Query: 121 GVKKTKASDAAKGGKKK 138
           GVKKTKASDAAK GKKK
Sbjct: 121 GVKKTKASDAAKAGKKK 137

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BLAST of CsaV3_2G004340 vs. ExPASy Swiss-Prot
Match: Q9SS17 (40S ribosomal protein S24-1 OS=Arabidopsis thaliana OX=3702 GN=RPS24A PE=2 SV=1)

HSP 1 Score: 234.2 bits (596), Expect = 9.0e-61
Identity = 119/132 (90.15%), Postives = 128/132 (96.97%), Query Frame = 0


Query: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLGRIYDVKDPNAIFVF 60
           MA+KAVTIRTRKFMTNRLLSRKQFVIDVLHPGR NVSKAELKEKL R+Y+VKDPNAIFVF
Sbjct: 1   MAEKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFVF 60

Query: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120
           KFRTHFGGGKS+GFGLIYD+VE+AKK+EPKYRLIRNGLDTK+EKSRKQ+KERKNRAKKIR
Sbjct: 61  KFRTHFGGGKSSGFGLIYDTVESAKKFEPKYRLIRNGLDTKIEKSRKQIKERKNRAKKIR 120

Query: 121 GVKKTKASDAAK 133
           GVKKTKA DA K
Sbjct: 121 GVKKTKAGDAKK 132

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BLAST of CsaV3_2G004340 vs. ExPASy Swiss-Prot
Match: Q8LC83 (40S ribosomal protein S24-2 OS=Arabidopsis thaliana OX=3702 GN=RPS24B PE=2 SV=2)

HSP 1 Score: 228.4 bits (581), Expect = 4.9e-59
Identity = 115/132 (87.12%), Postives = 125/132 (94.70%), Query Frame = 0


Query: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLGRIYDVKDPNAIFVF 60
           MA+KAVTIRTR FMTNRLL+RKQFVIDVLHPGR NVSKAELKEKL R+Y+VKDPNAIF F
Sbjct: 1   MAEKAVTIRTRNFMTNRLLARKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFCF 60

Query: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120
           KFRTHFGGGKS+G+GLIYD+VENAKK+EPKYRLIRNGLDTK+EKSRKQ+KERKNRAKKIR
Sbjct: 61  KFRTHFGGGKSSGYGLIYDTVENAKKFEPKYRLIRNGLDTKIEKSRKQIKERKNRAKKIR 120

Query: 121 GVKKTKASDAAK 133
           GVKKTKA D  K
Sbjct: 121 GVKKTKAGDTKK 132

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BLAST of CsaV3_2G004340 vs. ExPASy Swiss-Prot
Match: Q962Q6 (40S ribosomal protein S24 OS=Spodoptera frugiperda OX=7108 GN=RpS24 PE=2 SV=1)

HSP 1 Score: 163.3 bits (412), Expect = 1.9e-39
Identity = 84/132 (63.64%), Postives = 104/132 (78.79%), Query Frame = 0


Query: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLGRIYDVKDPNAIFVF 60
           M +   TIRTRKFMTNRLL+RKQ V DVLHPG+P VSK E++EKL ++Y V  P+ +FVF
Sbjct: 1   MTEGTATIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKV-TPDVVFVF 60

Query: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120
            F+T+FGGGKSTGF LIYD+++ AKK+EPK+RL R+GL  K   +RKQ KERKNR KK+R
Sbjct: 61  GFKTNFGGGKSTGFALIYDTLDLAKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKKVR 120

Query: 121 GVKKTKASDAAK 133
           G KK+K   AAK
Sbjct: 121 GTKKSKVGAAAK 131

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BLAST of CsaV3_2G004340 vs. ExPASy Swiss-Prot
Match: Q56JU9 (40S ribosomal protein S24 OS=Bos taurus OX=9913 GN=RPS24 PE=2 SV=2)

HSP 1 Score: 155.6 bits (392), Expect = 4.0e-37
Identity = 85/132 (64.39%), Postives = 99/132 (75.00%), Query Frame = 0


Query: 6   VTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLGRIYDVKDPNAIFVFKFRTH 65
           VTIRTRKFMTNRLL RKQ VIDVLHPG+  V K E++EKL ++Y    P+ IFVF FRTH
Sbjct: 5   VTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKT-TPDVIFVFGFRTH 64

Query: 66  FGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVKKT 125
           FGGGK+TGFG+IYDS++ AKK EPK+RL R+GL  K + SRKQ KERKNR KK+RG  K 
Sbjct: 65  FGGGKTTGFGMIYDSLDYAKKNEPKHRLARHGLYEKKKTSRKQRKERKNRMKKVRGTAKA 124

Query: 126 KASDAAKGGKKK 138
                   GKKK
Sbjct: 125 NVG----AGKKK 131

[Close]

BLAST of CsaV3_2G004340 vs. ExPASy Swiss-Prot
Match: P62847 (40S ribosomal protein S24 OS=Homo sapiens OX=9606 GN=RPS24 PE=1 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 4.0e-37
Identity = 82/127 (64.57%), Postives = 96/127 (75.59%), Query Frame = 0


Query: 6   VTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLGRIYDVKDPNAIFVFKFRTH 65
           VTIRTRKFMTNRLL RKQ VIDVLHPG+  V K E++EKL ++Y    P+ IFVF FRTH
Sbjct: 5   VTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKT-TPDVIFVFGFRTH 64

Query: 66  FGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVKKT 125
           FGGGK+TGFG+IYDS++ AKK EPK+RL R+GL  K + SRKQ KERKNR KK+RG  K 
Sbjct: 65  FGGGKTTGFGMIYDSLDYAKKNEPKHRLARHGLYEKKKTSRKQRKERKNRMKKVRGTAKA 124

Query: 126 KASDAAK 133
                 K
Sbjct: 125 NVGAGKK 130

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BLAST of CsaV3_2G004340 vs. ExPASy TrEMBL
Match: A0A0A0LFK1 (40S ribosomal protein S24 OS=Cucumis sativus OX=3659 GN=Csa_2G012120 PE=3 SV=1)

HSP 1 Score: 263.5 bits (672), Expect = 5.1e-67
Identity = 137/137 (100.00%), Postives = 137/137 (100.00%), Query Frame = 0


Query: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLGRIYDVKDPNAIFVF 60
           MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLGRIYDVKDPNAIFVF
Sbjct: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLGRIYDVKDPNAIFVF 60

Query: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120
           KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR
Sbjct: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120

Query: 121 GVKKTKASDAAKGGKKK 138
           GVKKTKASDAAKGGKKK
Sbjct: 121 GVKKTKASDAAKGGKKK 137

[Close]

BLAST of CsaV3_2G004340 vs. ExPASy TrEMBL
Match: A0A6J1HN66 (40S ribosomal protein S24 OS=Cucurbita maxima OX=3661 GN=LOC111465719 PE=3 SV=1)

HSP 1 Score: 261.2 bits (666), Expect = 2.5e-66
Identity = 136/137 (99.27%), Postives = 136/137 (99.27%), Query Frame = 0


Query: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLGRIYDVKDPNAIFVF 60
           MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLGRIYDVKDPNAIFVF
Sbjct: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLGRIYDVKDPNAIFVF 60

Query: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120
           KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR
Sbjct: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120

Query: 121 GVKKTKASDAAKGGKKK 138
           GVKKTKASDAAK GKKK
Sbjct: 121 GVKKTKASDAAKAGKKK 137

[Close]

BLAST of CsaV3_2G004340 vs. ExPASy TrEMBL
Match: A0A6J1FGN1 (40S ribosomal protein S24 OS=Cucurbita moschata OX=3662 GN=LOC111444017 PE=3 SV=1)

HSP 1 Score: 261.2 bits (666), Expect = 2.5e-66
Identity = 136/137 (99.27%), Postives = 136/137 (99.27%), Query Frame = 0


Query: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLGRIYDVKDPNAIFVF 60
           MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLGRIYDVKDPNAIFVF
Sbjct: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLGRIYDVKDPNAIFVF 60

Query: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120
           KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR
Sbjct: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120

Query: 121 GVKKTKASDAAKGGKKK 138
           GVKKTKASDAAK GKKK
Sbjct: 121 GVKKTKASDAAKAGKKK 137

[Close]

BLAST of CsaV3_2G004340 vs. ExPASy TrEMBL
Match: A0A6J1KJ42 (40S ribosomal protein S24 OS=Cucurbita maxima OX=3661 GN=LOC111493687 PE=3 SV=1)

HSP 1 Score: 258.8 bits (660), Expect = 1.3e-65
Identity = 134/137 (97.81%), Postives = 136/137 (99.27%), Query Frame = 0


Query: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLGRIYDVKDPNAIFVF 60
           MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLGRIYDVKDPN+IFVF
Sbjct: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLGRIYDVKDPNSIFVF 60

Query: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120
           KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR
Sbjct: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120

Query: 121 GVKKTKASDAAKGGKKK 138
           GVKKTKASD+AK GKKK
Sbjct: 121 GVKKTKASDSAKAGKKK 137

[Close]

BLAST of CsaV3_2G004340 vs. ExPASy TrEMBL
Match: A0A6J1CN14 (40S ribosomal protein S24 OS=Momordica charantia OX=3673 GN=LOC111013098 PE=3 SV=1)

HSP 1 Score: 258.8 bits (660), Expect = 1.3e-65
Identity = 135/137 (98.54%), Postives = 135/137 (98.54%), Query Frame = 0


Query: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLGRIYDVKDPNAIFVF 60
           MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKL RIYDVKDPNAIFVF
Sbjct: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLSRIYDVKDPNAIFVF 60

Query: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120
           KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR
Sbjct: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120

Query: 121 GVKKTKASDAAKGGKKK 138
           GVKKTKASDAAK GKKK
Sbjct: 121 GVKKTKASDAAKAGKKK 137

[Close]

BLAST of CsaV3_2G004340 vs. TAIR 10
Match: AT3G04920.1 (Ribosomal protein S24e family protein )

HSP 1 Score: 234.2 bits (596), Expect = 6.4e-62
Identity = 119/132 (90.15%), Postives = 128/132 (96.97%), Query Frame = 0


Query: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLGRIYDVKDPNAIFVF 60
           MA+KAVTIRTRKFMTNRLLSRKQFVIDVLHPGR NVSKAELKEKL R+Y+VKDPNAIFVF
Sbjct: 1   MAEKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFVF 60

Query: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120
           KFRTHFGGGKS+GFGLIYD+VE+AKK+EPKYRLIRNGLDTK+EKSRKQ+KERKNRAKKIR
Sbjct: 61  KFRTHFGGGKSSGFGLIYDTVESAKKFEPKYRLIRNGLDTKIEKSRKQIKERKNRAKKIR 120

Query: 121 GVKKTKASDAAK 133
           GVKKTKA DA K
Sbjct: 121 GVKKTKAGDAKK 132

[Close]

BLAST of CsaV3_2G004340 vs. TAIR 10
Match: AT5G28060.1 (Ribosomal protein S24e family protein )

HSP 1 Score: 228.4 bits (581), Expect = 3.5e-60
Identity = 115/132 (87.12%), Postives = 125/132 (94.70%), Query Frame = 0


Query: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLGRIYDVKDPNAIFVF 60
           MA+KAVTIRTR FMTNRLL+RKQFVIDVLHPGR NVSKAELKEKL R+Y+VKDPNAIF F
Sbjct: 1   MAEKAVTIRTRNFMTNRLLARKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFCF 60

Query: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120
           KFRTHFGGGKS+G+GLIYD+VENAKK+EPKYRLIRNGLDTK+EKSRKQ+KERKNRAKKIR
Sbjct: 61  KFRTHFGGGKSSGYGLIYDTVENAKKFEPKYRLIRNGLDTKIEKSRKQIKERKNRAKKIR 120

Query: 121 GVKKTKASDAAK 133
           GVKKTKA D  K
Sbjct: 121 GVKKTKAGDTKK 132

The following BLAST results are available for this feature:

BLAST of CsaV3_2G004340 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004139219.1	1.1e-66	100.00	40S ribosomal protein S24-1 [Cucumis sativus] >KGN60830.1 hypothetical protein C...	[more]
XP_022937688.1	5.2e-66	99.27	40S ribosomal protein S24-1-like [Cucurbita moschata] >XP_022966001.1 40S riboso...	[more]
XP_022143165.1	2.6e-65	98.54	40S ribosomal protein S24-1 [Momordica charantia]	[more]
XP_022999263.1	2.6e-65	97.81	40S ribosomal protein S24-1-like [Cucurbita maxima]	[more]
XP_008455742.1	3.4e-65	97.81	PREDICTED: 40S ribosomal protein S24-1 [Cucumis melo] >XP_038889626.1 40S riboso...	[more]

BLAST of CsaV3_2G004340 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SS17	9.0e-61	90.15	40S ribosomal protein S24-1 OS=Arabidopsis thaliana OX=3702 GN=RPS24A PE=2 SV=1	[more]
Q8LC83	4.9e-59	87.12	40S ribosomal protein S24-2 OS=Arabidopsis thaliana OX=3702 GN=RPS24B PE=2 SV=2	[more]
Q962Q6	1.9e-39	63.64	40S ribosomal protein S24 OS=Spodoptera frugiperda OX=7108 GN=RpS24 PE=2 SV=1	[more]
Q56JU9	4.0e-37	64.39	40S ribosomal protein S24 OS=Bos taurus OX=9913 GN=RPS24 PE=2 SV=2	[more]
P62847	4.0e-37	64.57	40S ribosomal protein S24 OS=Homo sapiens OX=9606 GN=RPS24 PE=1 SV=1	[more]

BLAST of CsaV3_2G004340 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LFK1	5.1e-67	100.00	40S ribosomal protein S24 OS=Cucumis sativus OX=3659 GN=Csa_2G012120 PE=3 SV=1	[more]
A0A6J1HN66	2.5e-66	99.27	40S ribosomal protein S24 OS=Cucurbita maxima OX=3661 GN=LOC111465719 PE=3 SV=1	[more]
A0A6J1FGN1	2.5e-66	99.27	40S ribosomal protein S24 OS=Cucurbita moschata OX=3662 GN=LOC111444017 PE=3 SV=...	[more]
A0A6J1KJ42	1.3e-65	97.81	40S ribosomal protein S24 OS=Cucurbita maxima OX=3661 GN=LOC111493687 PE=3 SV=1	[more]
A0A6J1CN14	1.3e-65	98.54	40S ribosomal protein S24 OS=Momordica charantia OX=3673 GN=LOC111013098 PE=3 SV...	[more]

BLAST of CsaV3_2G004340 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G04920.1	6.4e-62	90.15	Ribosomal protein S24e family protein	[more]
AT5G28060.1	3.5e-60	87.12	Ribosomal protein S24e family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001976	Ribosomal protein S24e	PFAM	PF01282	Ribosomal_S24e	coord: 25..103 e-value: 4.1E-35 score: 119.6
IPR001976	Ribosomal protein S24e	PANTHER	PTHR10496	40S RIBOSOMAL PROTEIN S24	coord: 1..137
IPR001976	Ribosomal protein S24e	HAMAP	MF_00545	Ribosomal_S24e	coord: 4..106 score: 19.458813
None	No IPR available	GENE3D	3.30.70.3370		coord: 1..132 e-value: 7.6E-59 score: 199.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 98..137
None	No IPR available	PANTHER	PTHR10496:SF18	40S RIBOSOMAL PROTEIN S24	coord: 1..137
IPR018098	Ribosomal S24e conserved site	PROSITE	PS00529	RIBOSOMAL_S24E	coord: 66..88
IPR012678	Ribosomal protein L23/L15e core domain superfamily	SUPERFAMILY	54189	Ribosomal proteins S24e, L23 and L15e	coord: 6..108

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_2G004340.1	CsaV3_2G004340.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome