CsaV3_2G003540 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_2G003540
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr2: 1736785 .. 1737259 (-)
RNA-Seq ExpressionCsaV3_2G003540
SyntenyCsaV3_2G003540
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACGATTCCAACGAACACAAAGGAAACTCCTCACCGTCCAGTCTGAAAGAGATGCTCAAATCTTCTCTATGTTTATCTTGTTGCCTTCGTAAGCACCGGAATGGCCATCATCATCTTCATCACCACCATCATCATCACCACCGGCGGATGATGTCTATTTCGTCCGACGGTGAATCGTCGCCTGGACCGCTCATGAGATGTTCTTCTGCAAAGGATAAGTCCAGATCTCGTGAGTGTCATGATATTAAAGATCGACTTCCGAGTTTCATTTCCCGACTCGGTCGCCATGGACGTCGTCACTCTGCTTCCGCTGATTTCCATTACGATGCACTTAGTTATTCGCTTAATTTCGATGAAGGATATGATGAAGGTCATGTTGATGATGATTTTCCTCTCAGGAATTTCTCCTCTAGGTTACCGGCTTCTCCTCCGAAATCCTCACCGTCTACGACTACTGCATCGAGGGAGATGA

mRNA sequence

ATGGACGATTCCAACGAACACAAAGGAAACTCCTCACCGTCCAGTCTGAAAGAGATGCTCAAATCTTCTCTATGTTTATCTTGTTGCCTTCGTAAGCACCGGAATGGCCATCATCATCTTCATCACCACCATCATCATCACCACCGGCGGATGATGTCTATTTCGTCCGACGGTGAATCGTCGCCTGGACCGCTCATGAGATGTTCTTCTGCAAAGGATAAGTCCAGATCTCGAATTTCTCCTCTAGGTTACCGGCTTCTCCTCCGAAATCCTCACCGTCTACGACTACTGCATCGAGGGAGATGA

Coding sequence (CDS)

ATGGACGATTCCAACGAACACAAAGGAAACTCCTCACCGTCCAGTCTGAAAGAGATGCTCAAATCTTCTCTATGTTTATCTTGTTGCCTTCGTAAGCACCGGAATGGCCATCATCATCTTCATCACCACCATCATCATCACCACCGGCGGATGATGTCTATTTCGTCCGACGGTGAATCGTCGCCTGGACCGCTCATGAGATGTTCTTCTGCAAAGGATAAGTCCAGATCTCGAATTTCTCCTCTAGGTTACCGGCTTCTCCTCCGAAATCCTCACCGTCTACGACTACTGCATCGAGGGAGATGA

Protein sequence

MDDSNEHKGNSSPSSLKEMLKSSLCLSCCLRKHRNGHHHLHHHHHHHHRRMMSISSDGESSPGPLMRCSSAKDKSRSRISPLGYRLLLRNPHRLRLLHRGR*
Homology
BLAST of CsaV3_2G003540 vs. NCBI nr
Match: KAE8651542.1 (hypothetical protein Csa_019176 [Cucumis sativus])

HSP 1 Score: 203.0 bits (515), Expect = 1.2e-48
Identity = 101/101 (100.00%), Postives = 101/101 (100.00%), Query Frame = 0

Query: 1   MDDSNEHKGNSSPSSLKEMLKSSLCLSCCLRKHRNGHHHLHHHHHHHHRRMMSISSDGES 60
           MDDSNEHKGNSSPSSLKEMLKSSLCLSCCLRKHRNGHHHLHHHHHHHHRRMMSISSDGES
Sbjct: 1   MDDSNEHKGNSSPSSLKEMLKSSLCLSCCLRKHRNGHHHLHHHHHHHHRRMMSISSDGES 60

Query: 61  SPGPLMRCSSAKDKSRSRISPLGYRLLLRNPHRLRLLHRGR 102
           SPGPLMRCSSAKDKSRSRISPLGYRLLLRNPHRLRLLHRGR
Sbjct: 61  SPGPLMRCSSAKDKSRSRISPLGYRLLLRNPHRLRLLHRGR 101

BLAST of CsaV3_2G003540 vs. NCBI nr
Match: XP_011650096.1 (NEDD8-specific protease 1 [Cucumis sativus])

HSP 1 Score: 157.9 bits (398), Expect = 4.6e-35
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 0

Query: 1  MDDSNEHKGNSSPSSLKEMLKSSLCLSCCLRKHRNGHHHLHHHHHHHHRRMMSISSDGES 60
          MDDSNEHKGNSSPSSLKEMLKSSLCLSCCLRKHRNGHHHLHHHHHHHHRRMMSISSDGES
Sbjct: 1  MDDSNEHKGNSSPSSLKEMLKSSLCLSCCLRKHRNGHHHLHHHHHHHHRRMMSISSDGES 60

Query: 61 SPGPLMRCSSAKDKSRSR 79
          SPGPLMRCSSAKDKSRSR
Sbjct: 61 SPGPLMRCSSAKDKSRSR 78

BLAST of CsaV3_2G003540 vs. NCBI nr
Match: XP_038890730.1 (homeobox protein MOX-2 [Benincasa hispida])

HSP 1 Score: 141.0 bits (354), Expect = 5.8e-30
Identity = 81/99 (81.82%), Postives = 84/99 (84.85%), Query Frame = 0

Query: 1   MDDSNEHKGNSSPSSLKEMLKSSLCLSCCLRKHRNGHHHLHHHHHHHHRRMMSISSDGES 60
           MDDSNEHKGNSSPSSLKEMLKSSLCLSCCLRKHRNGHHH HHHHHHHHRR MSISSDG+ 
Sbjct: 1   MDDSNEHKGNSSPSSLKEMLKSSLCLSCCLRKHRNGHHH-HHHHHHHHRR-MSISSDGD- 60

Query: 61  SPGPLMRCSSAKDKSRSRISPLGYRLLLRNPHRLRLLHR 100
           SPGPLMRCSSAKDKSRSR SP    +  R PH +  L R
Sbjct: 61  SPGPLMRCSSAKDKSRSRESP---EIKDRRPHFISRLGR 93

BLAST of CsaV3_2G003540 vs. NCBI nr
Match: XP_008460859.1 (PREDICTED: uncharacterized protein LOC103499607 [Cucumis melo])

HSP 1 Score: 134.8 bits (338), Expect = 4.2e-28
Identity = 71/81 (87.65%), Postives = 73/81 (90.12%), Query Frame = 0

Query: 1  MDDSNEHKGNSSPSSLKEMLKSSLCLSCCLRKHRNGHHHLHHHHHHH---HRRMMSISSD 60
          MDDSNEHKGNSS S+LKEMLKSSLCLSCCLRKHRNGHHHLHHHHHHH   H R MSISSD
Sbjct: 1  MDDSNEHKGNSSSSTLKEMLKSSLCLSCCLRKHRNGHHHLHHHHHHHHHGHHRRMSISSD 60

Query: 61 GESSPGPLMRCSSAKDKSRSR 79
          G+ SPGPL RCSSAKDKSRSR
Sbjct: 61 GD-SPGPLTRCSSAKDKSRSR 80

BLAST of CsaV3_2G003540 vs. NCBI nr
Match: KAA0063552.1 (uncharacterized protein E6C27_scaffold329G00590 [Cucumis melo var. makuwa] >TYJ97879.1 uncharacterized protein E5676_scaffold285G00930 [Cucumis melo var. makuwa])

HSP 1 Score: 134.8 bits (338), Expect = 4.2e-28
Identity = 71/81 (87.65%), Postives = 73/81 (90.12%), Query Frame = 0

Query: 1  MDDSNEHKGNSSPSSLKEMLKSSLCLSCCLRKHRNGHHHLHHHHHHH---HRRMMSISSD 60
          MDDSNEHKGNSS S+LKEMLKSSLCLSCCLRKHRNGHHHLHHHHHHH   H R MSISSD
Sbjct: 1  MDDSNEHKGNSSSSTLKEMLKSSLCLSCCLRKHRNGHHHLHHHHHHHHHGHHRRMSISSD 60

Query: 61 GESSPGPLMRCSSAKDKSRSR 79
          G+ SPGPL RCSSAKDKSRSR
Sbjct: 61 GD-SPGPLTRCSSAKDKSRSR 80

BLAST of CsaV3_2G003540 vs. ExPASy TrEMBL
Match: A0A0A0LL60 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G009350 PE=4 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 2.2e-35
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 0

Query: 1  MDDSNEHKGNSSPSSLKEMLKSSLCLSCCLRKHRNGHHHLHHHHHHHHRRMMSISSDGES 60
          MDDSNEHKGNSSPSSLKEMLKSSLCLSCCLRKHRNGHHHLHHHHHHHHRRMMSISSDGES
Sbjct: 1  MDDSNEHKGNSSPSSLKEMLKSSLCLSCCLRKHRNGHHHLHHHHHHHHRRMMSISSDGES 60

Query: 61 SPGPLMRCSSAKDKSRSR 79
          SPGPLMRCSSAKDKSRSR
Sbjct: 61 SPGPLMRCSSAKDKSRSR 78

BLAST of CsaV3_2G003540 vs. ExPASy TrEMBL
Match: A0A5D3BFQ4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold285G00930 PE=4 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 2.0e-28
Identity = 71/81 (87.65%), Postives = 73/81 (90.12%), Query Frame = 0

Query: 1  MDDSNEHKGNSSPSSLKEMLKSSLCLSCCLRKHRNGHHHLHHHHHHH---HRRMMSISSD 60
          MDDSNEHKGNSS S+LKEMLKSSLCLSCCLRKHRNGHHHLHHHHHHH   H R MSISSD
Sbjct: 1  MDDSNEHKGNSSSSTLKEMLKSSLCLSCCLRKHRNGHHHLHHHHHHHHHGHHRRMSISSD 60

Query: 61 GESSPGPLMRCSSAKDKSRSR 79
          G+ SPGPL RCSSAKDKSRSR
Sbjct: 61 GD-SPGPLTRCSSAKDKSRSR 80

BLAST of CsaV3_2G003540 vs. ExPASy TrEMBL
Match: A0A1S3CDF1 (uncharacterized protein LOC103499607 OS=Cucumis melo OX=3656 GN=LOC103499607 PE=4 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 2.0e-28
Identity = 71/81 (87.65%), Postives = 73/81 (90.12%), Query Frame = 0

Query: 1  MDDSNEHKGNSSPSSLKEMLKSSLCLSCCLRKHRNGHHHLHHHHHHH---HRRMMSISSD 60
          MDDSNEHKGNSS S+LKEMLKSSLCLSCCLRKHRNGHHHLHHHHHHH   H R MSISSD
Sbjct: 1  MDDSNEHKGNSSSSTLKEMLKSSLCLSCCLRKHRNGHHHLHHHHHHHHHGHHRRMSISSD 60

Query: 61 GESSPGPLMRCSSAKDKSRSR 79
          G+ SPGPL RCSSAKDKSRSR
Sbjct: 61 GD-SPGPLTRCSSAKDKSRSR 80

BLAST of CsaV3_2G003540 vs. ExPASy TrEMBL
Match: A0A6J1FDP2 (uncharacterized protein LOC111444439 OS=Cucurbita moschata OX=3662 GN=LOC111444439 PE=4 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 6.9e-21
Identity = 60/81 (74.07%), Postives = 65/81 (80.25%), Query Frame = 0

Query: 1  MDDSNEHKGNSSPSSLKEMLKSSLCLSCCLRKHRNGHHHLHHHHHHHHRRMMSISSDGES 60
          MDDSNEHK N+SPSSLK  +KSSLCLSCCLR+HRNGHHHL     H H+R MS SSDG+ 
Sbjct: 1  MDDSNEHKENASPSSLKAKIKSSLCLSCCLRRHRNGHHHL---QRHQHQRRMSFSSDGD- 60

Query: 61 SPGPLMRCSSAKDKSRSRISP 82
           P PL RCSSAKDKSRSR SP
Sbjct: 61 VPSPLTRCSSAKDKSRSRESP 77

BLAST of CsaV3_2G003540 vs. ExPASy TrEMBL
Match: A0A6J1HQB7 (uncharacterized protein LOC111465710 OS=Cucurbita maxima OX=3661 GN=LOC111465710 PE=4 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 1.2e-20
Identity = 60/81 (74.07%), Postives = 65/81 (80.25%), Query Frame = 0

Query: 1  MDDSNEHKGNSSPSSLKEMLKSSLCLSCCLRKHRNGHHHLHHHHHHHHRRMMSISSDGES 60
          MDDSNEHK N+SPSSLK  +KSSLCLSCCLR+HRNGHHHL     H H+R MS SSDG+ 
Sbjct: 1  MDDSNEHKENASPSSLKAKIKSSLCLSCCLRRHRNGHHHL---QRHQHQRRMSFSSDGD- 60

Query: 61 SPGPLMRCSSAKDKSRSRISP 82
           P PL RCSSAKDKSRSR SP
Sbjct: 61 VPTPLTRCSSAKDKSRSRESP 77

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAE8651542.11.2e-48100.00hypothetical protein Csa_019176 [Cucumis sativus][more]
XP_011650096.14.6e-35100.00NEDD8-specific protease 1 [Cucumis sativus][more]
XP_038890730.15.8e-3081.82homeobox protein MOX-2 [Benincasa hispida][more]
XP_008460859.14.2e-2887.65PREDICTED: uncharacterized protein LOC103499607 [Cucumis melo][more]
KAA0063552.14.2e-2887.65uncharacterized protein E6C27_scaffold329G00590 [Cucumis melo var. makuwa] >TYJ9... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LL602.2e-35100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G009350 PE=4 SV=1[more]
A0A5D3BFQ42.0e-2887.65Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A1S3CDF12.0e-2887.65uncharacterized protein LOC103499607 OS=Cucumis melo OX=3656 GN=LOC103499607 PE=... [more]
A0A6J1FDP26.9e-2174.07uncharacterized protein LOC111444439 OS=Cucurbita moschata OX=3662 GN=LOC1114444... [more]
A0A6J1HQB71.2e-2074.07uncharacterized protein LOC111465710 OS=Cucurbita maxima OX=3661 GN=LOC111465710... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 37..51
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 37..77

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_2G003540.1CsaV3_2G003540.1mRNA