CsaV3_2G003250 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_2G003250
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr2: 1562445 .. 1562600 (+)
RNA-Seq Expression	CsaV3_2G003250
Synteny	CsaV3_2G003250

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGATGAAGAAGAAGAAGAAGAAGGAAGAAGGGAAGAAGATGAAGATGATGATGGTGTAAGCCCTAGATTTCATAGTCATAAGCTTCATGGATTTGAGATATCAACGGCTAGGATTGGAGAATGGGGAGTGACAAACCATTGTGGGCAATGA

mRNA sequence

ATGGAGGATGAAGAAGAAGAAGAAGAAGGAAGAAGGGAAGAAGATGAAGATGATGATGGTGTAAGCCCTAGATTTCATAGTCATAAGCTTCATGGATTTGAGATATCAACGGCTAGGATTGGAGAATGGGGAGTGACAAACCATTGTGGGCAATGA

Coding sequence (CDS)

ATGGAGGATGAAGAAGAAGAAGAAGAAGGAAGAAGGGAAGAAGATGAAGATGATGATGGTGTAAGCCCTAGATTTCATAGTCATAAGCTTCATGGATTTGAGATATCAACGGCTAGGATTGGAGAATGGGGAGTGACAAACCATTGTGGGCAATGA

Protein sequence

MEDEEEEEEGRREEDEDDDGVSPRFHSHKLHGFEISTARIGEWGVTNHCGQ*

Homology

[Close]

BLAST of CsaV3_2G003250 vs. NCBI nr
Match: KGN60717.1 (hypothetical protein Csa_019340 [Cucumis sativus])

HSP 1 Score: 104.8 bits (260), Expect = 2.4e-19
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 0


Query: 1  MEDEEEEEEGRREEDEDDDGVSPRFHSHKLHGFEISTARIGEWGVTNHCGQ 52
          MEDEEEEEEGRREEDEDDDGVSPRFHSHKLHGFEISTARIGEWGVTNHCGQ
Sbjct: 1  MEDEEEEEEGRREEDEDDDGVSPRFHSHKLHGFEISTARIGEWGVTNHCGQ 51

[Close]

BLAST of CsaV3_2G003250 vs. ExPASy TrEMBL
Match: A0A0A0LJ11 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G008090 PE=4 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 1.1e-19
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 0


Query: 1  MEDEEEEEEGRREEDEDDDGVSPRFHSHKLHGFEISTARIGEWGVTNHCGQ 52
          MEDEEEEEEGRREEDEDDDGVSPRFHSHKLHGFEISTARIGEWGVTNHCGQ
Sbjct: 1  MEDEEEEEEGRREEDEDDDGVSPRFHSHKLHGFEISTARIGEWGVTNHCGQ 51

The following BLAST results are available for this feature:

BLAST of CsaV3_2G003250 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN60717.1	2.4e-19	100.00	hypothetical protein Csa_019340 [Cucumis sativus]	[more]

BLAST of CsaV3_2G003250 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_2G003250 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LJ11	1.1e-19	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G008090 PE=4 SV=1	[more]

BLAST of CsaV3_2G003250 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..16
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..29

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_2G003250.1	CsaV3_2G003250.1	mRNA