CsaV3_2G003170 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_2G003170
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	disease resistance protein RGA2-like
Location	chr2: 1493531 .. 1493967 (-)
RNA-Seq Expression	CsaV3_2G003170
Synteny	CsaV3_2G003170

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGTGGGAGAAGTTGAAGGAATGTTTAATGAGTATTGCTGAAAAAGGAAATTGTATCCTTGTCACTTCCAGGAGTAGTGGAATAGAAGAAATGATTGAAGAAAAACTTGGTACTCATCATCTAAAAATATTATCATGATCAATGTTGGTTAGTATTTAGCCACTTTGCCAATGCGAATGAAGTACCAATGACTTCCAATTTCAAGTTTGTGCGTGACGAGTTGGTTAAAAAGATTGGTGGCCTTCCACTACTTGCTAAAGTTTTGGGAGCAGCAGTTCAATTGTCTAGCGACCATGAACAATGGGTGACAAATTTAAAATCTATTCTGATTTATAATTTGCAAACACTAAAAGTTTCCTTACTTAAAAGAAAGGTCTTCTACGGACAAATTCTAGACGAATGGTCAGTTGAAGGCATTTGAAATTTTCACCTGA

mRNA sequence

ATGATGTGGGAGAAGTTGAAGGAATGTTTAATGAGTATTGCTGAAAAAGGAAATTGTATCCTTGTCACTTCCAGGAGTAGTGGAATAGAAGAAATGATTGAAGAAAAACTTGTATTTAGCCACTTTGCCAATGCGAATGAAGTACCAATGACTTCCAATTTCAAGTTTGTGCGTGACGAGTTGGTTAAAAAGATTGGTGGCCTTCCACTACTTGCTAAAGTTTTGGGAGCAGCAGTTCAATTGTCTAGCGACCATGAACAATGGACGAATGGTCAGTTGAAGGCATTTGAAATTTTCACCTGA

Coding sequence (CDS)

ATGATGTGGGAGAAGTTGAAGGAATGTTTAATGAGTATTGCTGAAAAAGGAAATTGTATCCTTGTCACTTCCAGGAGTAGTGGAATAGAAGAAATGATTGAAGAAAAACTTGTATTTAGCCACTTTGCCAATGCGAATGAAGTACCAATGACTTCCAATTTCAAGTTTGTGCGTGACGAGTTGGTTAAAAAGATTGGTGGCCTTCCACTACTTGCTAAAGTTTTGGGAGCAGCAGTTCAATTGTCTAGCGACCATGAACAATGGACGAATGGTCAGTTGAAGGCATTTGAAATTTTCACCTGA

Protein sequence

MMWEKLKECLMSIAEKGNCILVTSRSSGIEEMIEEKLVFSHFANANEVPMTSNFKFVRDELVKKIGGLPLLAKVLGAAVQLSSDHEQWTNGQLKAFEIFT*

Homology

[Close]

BLAST of CsaV3_2G003170 vs. NCBI nr
Match: KGN60708.1 (hypothetical protein Csa_019177 [Cucumis sativus])

HSP 1 Score: 202.6 bits (514), Expect = 1.6e-48
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0


Query: 1   MMWEKLKECLMSIAEKGNCILVTSRSSGIEEMIEEKLVFSHFANANEVPMTSNFKFVRDE 60
           MMWEKLKECLMSIAEKGNCILVTSRSSGIEEMIEEKLVFSHFANANEVPMTSNFKFVRDE
Sbjct: 1   MMWEKLKECLMSIAEKGNCILVTSRSSGIEEMIEEKLVFSHFANANEVPMTSNFKFVRDE 60

Query: 61  LVKKIGGLPLLAKVLGAAVQLSSDHEQWTNGQLKAFEIFT 101
           LVKKIGGLPLLAKVLGAAVQLSSDHEQWTNGQLKAFEIFT
Sbjct: 61  LVKKIGGLPLLAKVLGAAVQLSSDHEQWTNGQLKAFEIFT 100

[Close]

BLAST of CsaV3_2G003170 vs. NCBI nr
Match: XP_011650061.1 (putative disease resistance protein RGA3 [Cucumis sativus] >KGN63368.1 hypothetical protein Csa_022194 [Cucumis sativus])

HSP 1 Score: 114.4 bits (285), Expect = 5.8e-22
Identity = 60/104 (57.69%), Postives = 73/104 (70.19%), Query Frame = 0


Query: 1   MMWEKLKECLMSIAE-KGNCILVTSRSSGIEEMIEEKL---------------VFSHFAN 60
           M+WEKLKECLMSI    GN ILVT+RSSGI +M+EE +               +F +FAN
Sbjct: 285 MLWEKLKECLMSITHMSGNSILVTTRSSGIAKMMEENIGSHELRKLSDDQCWSIFRNFAN 344

Query: 61  ANEVPMTSNFKFVRDELVKKIGGLPLLAKVLGAAVQLSSDHEQW 89
           A +VPMTSN +FV+ E  K+IGGLPL+AKVLGAAV  S DH+QW
Sbjct: 345 AKDVPMTSNLEFVQKEFDKRIGGLPLIAKVLGAAVPFSGDHDQW 388

[Close]

BLAST of CsaV3_2G003170 vs. NCBI nr
Match: XP_031736677.1 (putative disease resistance protein RGA1 [Cucumis sativus])

HSP 1 Score: 110.2 bits (274), Expect = 1.1e-20
Identity = 59/104 (56.73%), Postives = 74/104 (71.15%), Query Frame = 0


Query: 1   MMWEKLKECLMSIAEK-GNCILVTSRSSGIEEMIEEKL---------------VFSHFAN 60
           M+WEKLKECLMSI E+ G+ +LVT+RS  I EM++E L               VFS+FA 
Sbjct: 115 MLWEKLKECLMSIVEELGSSVLVTTRSRKIAEMMKETLDTYHLNKLTDDQCWSVFSYFAK 174

Query: 61  ANEVPMTSNFKFVRDELVKKIGGLPLLAKVLGAAVQLSSDHEQW 89
           AN VP+TSN + VR+E+VKKIGGLPLLA+VLG A Q S D+E+W
Sbjct: 175 ANAVPITSNLELVREEVVKKIGGLPLLARVLGEAAQFSGDYEKW 218

[Close]

BLAST of CsaV3_2G003170 vs. NCBI nr
Match: KAE8651535.1 (hypothetical protein Csa_019319 [Cucumis sativus])

HSP 1 Score: 110.2 bits (274), Expect = 1.1e-20
Identity = 59/104 (56.73%), Postives = 74/104 (71.15%), Query Frame = 0


Query: 1   MMWEKLKECLMSIAEK-GNCILVTSRSSGIEEMIEEKL---------------VFSHFAN 60
           M+WEKLKECLMSI E+ G+ +LVT+RS  I EM++E L               VFS+FA 
Sbjct: 228 MLWEKLKECLMSIVEELGSSVLVTTRSRKIAEMMKETLDTYHLNKLTDDQCWSVFSYFAK 287

Query: 61  ANEVPMTSNFKFVRDELVKKIGGLPLLAKVLGAAVQLSSDHEQW 89
           AN VP+TSN + VR+E+VKKIGGLPLLA+VLG A Q S D+E+W
Sbjct: 288 ANAVPITSNLELVREEVVKKIGGLPLLARVLGEAAQFSGDYEKW 331

[Close]

BLAST of CsaV3_2G003170 vs. NCBI nr
Match: XP_022944235.1 (disease resistance protein RGA2-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 82.8 bits (203), Expect = 1.9e-12
Identity = 45/106 (42.45%), Postives = 67/106 (63.21%), Query Frame = 0


Query: 1   MMWEKLKECLMSIAEK-GNCILVTSRSSGIEEMIEEKL---------------VFSHFAN 60
           ++WE+LK  LM I  K GN ILVT+R+  + +++E+ L               +F   AN
Sbjct: 287 LLWEQLKNFLMKITSKSGNSILVTTRNVEVCKIMEKALPTHHITKLSDEQCWSLFMESAN 346

Query: 61  ANEVPMTSNFKFVRDELVKKIGGLPLLAKVLGAAVQLSSDHEQWTN 91
           AN +P TSN + VR+ELVKK GG+PL+A+VLG+AV+   D++ W +
Sbjct: 347 ANGLPTTSNLEAVREELVKKFGGIPLVARVLGSAVKFEQDYDIWVS 392

[Close]

BLAST of CsaV3_2G003170 vs. ExPASy TrEMBL
Match: A0A0A0LG14 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G008010 PE=4 SV=1)

HSP 1 Score: 202.6 bits (514), Expect = 7.8e-49
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0


Query: 1   MMWEKLKECLMSIAEKGNCILVTSRSSGIEEMIEEKLVFSHFANANEVPMTSNFKFVRDE 60
           MMWEKLKECLMSIAEKGNCILVTSRSSGIEEMIEEKLVFSHFANANEVPMTSNFKFVRDE
Sbjct: 1   MMWEKLKECLMSIAEKGNCILVTSRSSGIEEMIEEKLVFSHFANANEVPMTSNFKFVRDE 60

Query: 61  LVKKIGGLPLLAKVLGAAVQLSSDHEQWTNGQLKAFEIFT 101
           LVKKIGGLPLLAKVLGAAVQLSSDHEQWTNGQLKAFEIFT
Sbjct: 61  LVKKIGGLPLLAKVLGAAVQLSSDHEQWTNGQLKAFEIFT 100

[Close]

BLAST of CsaV3_2G003170 vs. ExPASy TrEMBL
Match: A0A0A0LNG8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G433340 PE=4 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 2.8e-22
Identity = 60/104 (57.69%), Postives = 73/104 (70.19%), Query Frame = 0


Query: 1   MMWEKLKECLMSIAE-KGNCILVTSRSSGIEEMIEEKL---------------VFSHFAN 60
           M+WEKLKECLMSI    GN ILVT+RSSGI +M+EE +               +F +FAN
Sbjct: 285 MLWEKLKECLMSITHMSGNSILVTTRSSGIAKMMEENIGSHELRKLSDDQCWSIFRNFAN 344

Query: 61  ANEVPMTSNFKFVRDELVKKIGGLPLLAKVLGAAVQLSSDHEQW 89
           A +VPMTSN +FV+ E  K+IGGLPL+AKVLGAAV  S DH+QW
Sbjct: 345 AKDVPMTSNLEFVQKEFDKRIGGLPLIAKVLGAAVPFSGDHDQW 388

[Close]

BLAST of CsaV3_2G003170 vs. ExPASy TrEMBL
Match: A0A0A0LJ04 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G008000 PE=4 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 5.3e-21
Identity = 59/104 (56.73%), Postives = 74/104 (71.15%), Query Frame = 0


Query: 1   MMWEKLKECLMSIAEK-GNCILVTSRSSGIEEMIEEKL---------------VFSHFAN 60
           M+WEKLKECLMSI E+ G+ +LVT+RS  I EM++E L               VFS+FA 
Sbjct: 228 MLWEKLKECLMSIVEELGSSVLVTTRSRKIAEMMKETLDTYHLNKLTDDQCWSVFSYFAK 287

Query: 61  ANEVPMTSNFKFVRDELVKKIGGLPLLAKVLGAAVQLSSDHEQW 89
           AN VP+TSN + VR+E+VKKIGGLPLLA+VLG A Q S D+E+W
Sbjct: 288 ANAVPITSNLELVREEVVKKIGGLPLLARVLGEAAQFSGDYEKW 331

[Close]

BLAST of CsaV3_2G003170 vs. ExPASy TrEMBL
Match: A0A6J1FYJ5 (disease resistance protein RGA2-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111448744 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 9.0e-13
Identity = 45/106 (42.45%), Postives = 67/106 (63.21%), Query Frame = 0


Query: 1   MMWEKLKECLMSIAEK-GNCILVTSRSSGIEEMIEEKL---------------VFSHFAN 60
           ++WE+LK  LM I  K GN ILVT+R+  + +++E+ L               +F   AN
Sbjct: 287 LLWEQLKNFLMKITSKSGNSILVTTRNVEVCKIMEKALPTHHITKLSDEQCWSLFMESAN 346

Query: 61  ANEVPMTSNFKFVRDELVKKIGGLPLLAKVLGAAVQLSSDHEQWTN 91
           AN +P TSN + VR+ELVKK GG+PL+A+VLG+AV+   D++ W +
Sbjct: 347 ANGLPTTSNLEAVREELVKKFGGIPLVARVLGSAVKFEQDYDIWVS 392

[Close]

BLAST of CsaV3_2G003170 vs. ExPASy TrEMBL
Match: A0A6J1FWC6 (disease resistance protein RGA2-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111448744 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 9.0e-13
Identity = 45/106 (42.45%), Postives = 67/106 (63.21%), Query Frame = 0


Query: 1   MMWEKLKECLMSIAEK-GNCILVTSRSSGIEEMIEEKL---------------VFSHFAN 60
           ++WE+LK  LM I  K GN ILVT+R+  + +++E+ L               +F   AN
Sbjct: 259 LLWEQLKNFLMKITSKSGNSILVTTRNVEVCKIMEKALPTHHITKLSDEQCWSLFMESAN 318

Query: 61  ANEVPMTSNFKFVRDELVKKIGGLPLLAKVLGAAVQLSSDHEQWTN 91
           AN +P TSN + VR+ELVKK GG+PL+A+VLG+AV+   D++ W +
Sbjct: 319 ANGLPTTSNLEAVREELVKKFGGIPLVARVLGSAVKFEQDYDIWVS 364

The following BLAST results are available for this feature:

BLAST of CsaV3_2G003170 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN60708.1	1.6e-48	100.00	hypothetical protein Csa_019177 [Cucumis sativus]	[more]
XP_011650061.1	5.8e-22	57.69	putative disease resistance protein RGA3 [Cucumis sativus] >KGN63368.1 hypotheti...	[more]
XP_031736677.1	1.1e-20	56.73	putative disease resistance protein RGA1 [Cucumis sativus]	[more]
KAE8651535.1	1.1e-20	56.73	hypothetical protein Csa_019319 [Cucumis sativus]	[more]
XP_022944235.1	1.9e-12	42.45	disease resistance protein RGA2-like isoform X2 [Cucurbita moschata]	[more]

BLAST of CsaV3_2G003170 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_2G003170 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LG14	7.8e-49	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G008010 PE=4 SV=1	[more]
A0A0A0LNG8	2.8e-22	57.69	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G433340 PE=4 SV=1	[more]
A0A0A0LJ04	5.3e-21	56.73	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G008000 PE=4 SV=1	[more]
A0A6J1FYJ5	9.0e-13	42.45	disease resistance protein RGA2-like isoform X2 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1FWC6	9.0e-13	42.45	disease resistance protein RGA2-like isoform X1 OS=Cucurbita moschata OX=3662 GN...	[more]

BLAST of CsaV3_2G003170 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_2G003170.1	CsaV3_2G003170.1	mRNA