CsaV3_2G002460 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_2G002460
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr2: 1023906 .. 1024235 (-)
RNA-Seq ExpressionCsaV3_2G002460
SyntenyCsaV3_2G002460
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TGGAATTAGGCGATTTAATCAGTAATATCATGATCGTGCCAACAAAGAAGCATGGAGATGCAACGGCCGAGGATATAAAATCTGGTTTTCTGTTGCTTGATCATCCGGAAGCATCGCTTTCGAAAACTGGTTTTCCGGCGGTTTCTGATGCGGAGTTGCGTTGACTGAGAAGAGTGAGCGACGGCGTATGCGAGGGACATTACGGTGGAGACCGGTGGCCGGGAGAATTTGAGAAGGAGAGAAGAGATGGGAAAAGGATTTGTTGAACGGAGTTTGAGGAAATGGAGGATGAAGAAATGGTGTATTTATAGAGAAGGGATATGGACCTGA

mRNA sequence

GAATTAGGCGATTTAATCAGTAATATCATGATCGTGCCAACAAAGAAGCATGGAGATGCAACGGCCGAGGATATAAAATCTGGTTTTCTGTTGCTTGATCATCCGGAAGCATCGCTTTCGAAAACTGGTTTTCCGGCGGTTTCTGATGCGGAGGACATTACGGTGGAGACCGGTGGCCGGGAGAATTTGAGAAGGAGAGAAGAGATGGGAAAAGGATTTGTTGAACGGAGTTTGAGGAAATGGAGGATGAAGAAATGGTGTATTTATAGAGAAGGGATATGGACCTGA

Coding sequence (CDS)

GAATTAGGCGATTTAATCAGTAATATCATGATCGTGCCAACAAAGAAGCATGGAGATGCAACGGCCGAGGATATAAAATCTGGTTTTCTGTTGCTTGATCATCCGGAAGCATCGCTTTCGAAAACTGGTTTTCCGGCGGTTTCTGATGCGGAGGACATTACGGTGGAGACCGGTGGCCGGGAGAATTTGAGAAGGAGAGAAGAGATGGGAAAAGGATTTGTTGAACGGAGTTTGAGGAAATGGAGGATGAAGAAATGGTGTATTTATAGAGAAGGGATATGGACCTGA

Protein sequence

ELGDLISNIMIVPTKKHGDATAEDIKSGFLLLDHPEASLSKTGFPAVSDAEDITVETGGRENLRRREEMGKGFVERSLRKWRMKKWCIYREGIWT*
Homology
[Close]
BLAST of CsaV3_2G002460 vs. NCBI nr
Match: KAE8651522.1 (hypothetical protein Csa_023920, partial [Cucumis sativus])

HSP 1 Score: 197.6 bits (501), Expect = 4.9e-47
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 0 

Query: 1  ELGDLISNIMIVPTKKHGDATAEDIKSGFLLLDHPEASLSKTGFPAVSDAEDITVETGGR 60
          ELGDLISNIMIVPTKKHGDATAEDIKSGFLLLDHPEASLSKTGFPAVSDAEDITVETGGR
Sbjct: 1  ELGDLISNIMIVPTKKHGDATAEDIKSGFLLLDHPEASLSKTGFPAVSDAEDITVETGGR 60

Query: 61 ENLRRREEMGKGFVERSLRKWRMKKWCIYREGIWT 96
          ENLRRREEMGKGFVERSLRKWRMKKWCIYREGIWT
Sbjct: 61 ENLRRREEMGKGFVERSLRKWRMKKWCIYREGIWT 95

[Close]
BLAST of CsaV3_2G002460 vs. NCBI nr
Match: KAA0061572.1 (hypothetical protein E6C27_scaffold41G001340 [Cucumis melo var. makuwa])

HSP 1 Score: 98.6 bits (244), Expect = 3.1e-17
Identity = 47/51 (92.16%), Postives = 50/51 (98.04%), Query Frame = 0 

Query: 1  ELGDLISNIMIVPTKKHGDATAEDIKSGFLLLDHPEASLSKTGFPAVSDAE 52
          +LGDLI NIMIVPTKKHGDATAEDI+SGFLLLDHPEASLSKTGFPAVS+AE
Sbjct: 3  DLGDLIRNIMIVPTKKHGDATAEDIESGFLLLDHPEASLSKTGFPAVSEAE 53

[Close]
BLAST of CsaV3_2G002460 vs. NCBI nr
Match: TYK10702.1 (hypothetical protein E5676_scaffold332G00110 [Cucumis melo var. makuwa])

HSP 1 Score: 98.6 bits (244), Expect = 3.1e-17
Identity = 47/51 (92.16%), Postives = 50/51 (98.04%), Query Frame = 0 

Query: 1  ELGDLISNIMIVPTKKHGDATAEDIKSGFLLLDHPEASLSKTGFPAVSDAE 52
          +LGDLI NIMIVPTKKHGDATAEDI+SGFLLLDHPEASLSKTGFPAVS+AE
Sbjct: 3  DLGDLIRNIMIVPTKKHGDATAEDIESGFLLLDHPEASLSKTGFPAVSEAE 53

[Close]
BLAST of CsaV3_2G002460 vs. ExPASy TrEMBL
Match: A0A5A7V070 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold41G001340 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 1.5e-17
Identity = 47/51 (92.16%), Postives = 50/51 (98.04%), Query Frame = 0 

Query: 1  ELGDLISNIMIVPTKKHGDATAEDIKSGFLLLDHPEASLSKTGFPAVSDAE 52
          +LGDLI NIMIVPTKKHGDATAEDI+SGFLLLDHPEASLSKTGFPAVS+AE
Sbjct: 3  DLGDLIRNIMIVPTKKHGDATAEDIESGFLLLDHPEASLSKTGFPAVSEAE 53

[Close]
BLAST of CsaV3_2G002460 vs. ExPASy TrEMBL
Match: A0A5D3CHF0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold332G00110 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 1.5e-17
Identity = 47/51 (92.16%), Postives = 50/51 (98.04%), Query Frame = 0 

Query: 1  ELGDLISNIMIVPTKKHGDATAEDIKSGFLLLDHPEASLSKTGFPAVSDAE 52
          +LGDLI NIMIVPTKKHGDATAEDI+SGFLLLDHPEASLSKTGFPAVS+AE
Sbjct: 3  DLGDLIRNIMIVPTKKHGDATAEDIESGFLLLDHPEASLSKTGFPAVSEAE 53

The following BLAST results are available for this feature:
BLAST of CsaV3_2G002460 vs. NCBI nr
Match NameE-valueIdentityDescription
KAE8651522.14.9e-47100.00hypothetical protein Csa_023920, partial [Cucumis sativus][more]
KAA0061572.13.1e-1792.16hypothetical protein E6C27_scaffold41G001340 [Cucumis melo var. makuwa][more]
TYK10702.13.1e-1792.16hypothetical protein E5676_scaffold332G00110 [Cucumis melo var. makuwa][more]
BLAST of CsaV3_2G002460 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_2G002460 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7V0701.5e-1792.16Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3CHF01.5e-1792.16Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
BLAST of CsaV3_2G002460 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_2G002460.1CsaV3_2G002460.1mRNA