CsaV3_2G002290 (gene) Cucumber (Chinese Long) v3
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.AGATATGAAAAGAATAACCTTTTGATATGGATAAGTTTTGTCAGAGTTCCACAATTCAAAACCAGGAAATAACCTTAGTTTTGATCTTCAGTGATTTTTGTATGCGCTTTTTAGAACTTGTGGTCAGTGGAAATTATATACTTATTTCTCTCTTTTCTGATTTGTATCCAAATTGTGGAAGATATTGATATTATATCCTAGAATGACCATATCATCATAATTATTGATACTAAAAAAATATGAACTTAGCCAGATTCTTCTTTTTGACATAAGGGATAGAGTGGGCTTTTTTGTATGGTTGCTTTCACTAAGGACAAATCAAGAAGAATCAAAATATCACCTCTTGAACCACTATAACTACTTCTAGCCTCACGCACTAGTTGAGGATAAATCTCTTAATTCTGTTCATATTTATATTGTAATTAACAAATCTTTGCTCTTTTAAATCTTTGAGTTTCCTTACTTCTTGCAGCCCTGCAGCTATGGCCTCCGATGGCAGCCTTAGTGTTTCGGTTTCCACATCTCCTAAACATGCAAACAGAGATGCTGAAACCGTGAGGTCGAATTCGCCAAAAGGCCAGTGTTTATGCTCGCCCACGATGCATCAAGGCTCCTTTAGATGTCGGCTTCATCGTTCGACATCGTCGGCATGGATGAAACGTTCAAAATCAATGCCTACCAACAACCCTGTGGCTTCTCTTTCTCCCAAAGAATCTCTTGAGTCTTCCTAAGGCCATGGACCATGTGGATAAAGCTGAATACATGTAACACGCCTTAAACTTATATCCTTTTAGTTATGGAGAAGAGAAGCTTTAGTTCTATATCTCAACTTTCTATGCAATATAATATATACATATATATAATATGTTTGAATATATGTCTGAAAAGTAACTTTCTTTGAAAATTCTTTGGTCTGGGTATAGATTAAGTTGGTCGAGTTATATCGTTCTTTCTTGAAATACAACCATCATGGATTGGTCTTGTGAATTAATTTTCTAGTAGTTTCCTCGACATTTAACTGTTGTAGGGTTAAGTTGGTTGTCCTGTGAGTCGAGTTGCTCATAAGTTGGACTAAACACTCACGAATGTAAAAAAAAAATGTATTTTATTCGATCTTGGATTTGTAAATGAGAAAGTAGTTTGTTCAGGAATGCATGGAGTGAAAAGAAAGATATCCAGTGGATGTGATTGGCTATGGATTTAAAAGAAAAGAAAGGTAAAATAGAAGGCATGGCCTACCCTTATAATATTATTAGTGGGTTTGGGATTTGGTGTTTAGATTATCTCCTTGTCTTTGTTACTTGTCAACCTCATTATCTTCAATTATTGCAGCTCTTTACACACTTCTGTTCAAACCCAAATTTTTGTCTTGCTTTTTGTCTGTAATTTCATCTTCCATCTTGATTTTGATGGATTTGATTTATTTTCCTTCAAATTTAGACCACAAAATTATGTCTAATGCCTATGCCTAATAATAACAAAGAACGGAAACAACACGACGGTTGAAGGTTATTTATTGCATTGTACCAAATTTGTCACTGTTAATGTTATTTTCTTTTTTCATTCATCAGGTTTGAGATTAGCATATATTTGATAATTCAAGAACCACTTTAATCTCTCGAGTTATGGAATTTCTCTTAGGTTGTCGTTATATTAATTTAGTTGTTAGTTGATAAATGGAATAATGATGGGACATATTGAGTCAGTAAATTTCTTTTTTTATAATGATCTCCTCTTTTTTTTTCTAATGATCTCCTCTCCCCGTAACACGAAGAGCGGGACAAAGAGCTTGCCCATGGGTTTTGCCCTTAGTTTGTTGTTTTGTTTGTTACACCATACCAAATTACACAATGTTAACTGCTTTATAATGTTGAATTGTTAAGTGTATAGGCCTAATCAAACCAATTTTAAAATTTTAGAGACTATAGGCTATACGTATAAGGAATCTTATGGACTAATACTCATGTGCTTTGTGTTTTATGGTTATATTTTTATAACAAGTTTTTAAATAATTCAAATTGTGTGTGTGTGTGAGAAAAATCAATTGATGATAATGGATGATGTTTGTTCATTTGAGATGTTAGGGTCAATGATTCATTTACTAGCTATAGTTAATGTAAGATTGATTTCTCATTTTATTCAATATTTTCACCAATATTTCTATTTTTTATTGTCGATGTTTACGTTATATCGCATAGAGAAAAAATCACAAAACATATATATGATTTAAATAAGACATGTAACTGAATTCAATAGACTAAGTACTTGTGACTTAATTAATTCAAATTATTGAAAAAGT ATGGCCTCCGATGGCAGCCTTAGTGTTTCGGTTTCCACATCTCCTAAACATGCAAACAGAGATGCTGAAACCGTGAGGTCGAATTCGCCAAAAGGCCAGTGTTTATGCTCGCCCACGATGCATCAAGGCTCCTTTAGATGTCGGCTTCATCGTTCGACATCGTCGGCATGGATGAAACGTTCAAAATCAATGCCTACCAACAACCCTGTGGCTTCTCTTTCTCCCAAAGAATCTCTTGAGTCTTCCTAA ATGGCCTCCGATGGCAGCCTTAGTGTTTCGGTTTCCACATCTCCTAAACATGCAAACAGAGATGCTGAAACCGTGAGGTCGAATTCGCCAAAAGGCCAGTGTTTATGCTCGCCCACGATGCATCAAGGCTCCTTTAGATGTCGGCTTCATCGTTCGACATCGTCGGCATGGATGAAACGTTCAAAATCAATGCCTACCAACAACCCTGTGGCTTCTCTTTCTCCCAAAGAATCTCTTGAGTCTTCCTAA MASDGSLSVSVSTSPKHANRDAETVRSNSPKGQCLCSPTMHQGSFRCRLHRSTSSAWMKRSKSMPTNNPVASLSPKESLESS* Homology
BLAST of CsaV3_2G002290 vs. NCBI nr
Match: KGN60621.1 (hypothetical protein Csa_019426 [Cucumis sativus]) HSP 1 Score: 161.4 bits (407), Expect = 3.4e-36 Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 0
BLAST of CsaV3_2G002290 vs. NCBI nr
Match: KAA0061558.1 (hypothetical protein E6C27_scaffold41G001200 [Cucumis melo var. makuwa]) HSP 1 Score: 149.4 bits (376), Expect = 1.3e-32 Identity = 76/82 (92.68%), Postives = 78/82 (95.12%), Query Frame = 0
BLAST of CsaV3_2G002290 vs. NCBI nr
Match: TYK10714.1 (hypothetical protein E5676_scaffold332G00230 [Cucumis melo var. makuwa]) HSP 1 Score: 147.9 bits (372), Expect = 3.9e-32 Identity = 75/82 (91.46%), Postives = 78/82 (95.12%), Query Frame = 0
BLAST of CsaV3_2G002290 vs. NCBI nr
Match: KAG7030425.1 (hypothetical protein SDJN02_08772 [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 144.1 bits (362), Expect = 5.6e-31 Identity = 74/82 (90.24%), Postives = 77/82 (93.90%), Query Frame = 0
BLAST of CsaV3_2G002290 vs. NCBI nr
Match: KAG6586427.1 (hypothetical protein SDJN03_19160, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 141.7 bits (356), Expect = 2.8e-30 Identity = 72/82 (87.80%), Postives = 76/82 (92.68%), Query Frame = 0
BLAST of CsaV3_2G002290 vs. ExPASy TrEMBL
Match: A0A0A0LKU3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G004705 PE=4 SV=1) HSP 1 Score: 161.4 bits (407), Expect = 1.6e-36 Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 0
BLAST of CsaV3_2G002290 vs. ExPASy TrEMBL
Match: A0A5A7V1X5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold41G001200 PE=4 SV=1) HSP 1 Score: 149.4 bits (376), Expect = 6.4e-33 Identity = 76/82 (92.68%), Postives = 78/82 (95.12%), Query Frame = 0
BLAST of CsaV3_2G002290 vs. ExPASy TrEMBL
Match: A0A5D3CHP3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold332G00230 PE=4 SV=1) HSP 1 Score: 147.9 bits (372), Expect = 1.9e-32 Identity = 75/82 (91.46%), Postives = 78/82 (95.12%), Query Frame = 0
BLAST of CsaV3_2G002290 vs. ExPASy TrEMBL
Match: A0A6J1G498 (uncharacterized protein LOC111450652 OS=Cucurbita moschata OX=3662 GN=LOC111450652 PE=4 SV=1) HSP 1 Score: 141.7 bits (356), Expect = 1.3e-30 Identity = 73/82 (89.02%), Postives = 76/82 (92.68%), Query Frame = 0
BLAST of CsaV3_2G002290 vs. ExPASy TrEMBL
Match: A0A061GNT6 (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_037897 PE=4 SV=1) HSP 1 Score: 99.8 bits (247), Expect = 5.9e-18 Identity = 58/83 (69.88%), Postives = 68/83 (81.93%), Query Frame = 0
BLAST of CsaV3_2G002290 vs. TAIR 10
Match: AT3G13227.1 (serine-rich protein-related ) HSP 1 Score: 48.5 bits (114), Expect = 3.0e-06 Identity = 21/42 (50.00%), Postives = 28/42 (66.67%), Query Frame = 0
BLAST of CsaV3_2G002290 vs. TAIR 10
Match: AT1G67910.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G24577.1); Has 167 Blast hits to 167 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 167; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 44.3 bits (103), Expect = 5.6e-05 Identity = 21/39 (53.85%), Postives = 29/39 (74.36%), Query Frame = 0
BLAST of CsaV3_2G002290 vs. TAIR 10
Match: AT1G67910.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G24577.1). ) HSP 1 Score: 44.3 bits (103), Expect = 5.6e-05 Identity = 21/39 (53.85%), Postives = 29/39 (74.36%), Query Frame = 0
BLAST of CsaV3_2G002290 vs. TAIR 10
Match: AT1G24577.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G67910.2); Has 115 Blast hits to 115 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 115; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 43.5 bits (101), Expect = 9.6e-05 Identity = 19/34 (55.88%), Postives = 27/34 (79.41%), Query Frame = 0
BLAST of CsaV3_2G002290 vs. TAIR 10
Match: AT3G56500.1 (serine-rich protein-related ) HSP 1 Score: 42.0 bits (97), Expect = 2.8e-04 Identity = 18/42 (42.86%), Postives = 28/42 (66.67%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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