CsaV3_2G002290 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_2G002290
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionPeroxiredoxins prx-1 prx-2 prx-3
Locationchr2: 900796 .. 903094 (+)
RNA-Seq ExpressionCsaV3_2G002290
SyntenyCsaV3_2G002290
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
AGATATGAAAAGAATAACCTTTTGATATGGATAAGTTTTGTCAGAGTTCCACAATTCAAAACCAGGAAATAACCTTAGTTTTGATCTTCAGTGATTTTTGTATGCGCTTTTTAGAACTTGTGGTCAGTGGAAATTATATACTTATTTCTCTCTTTTCTGATTTGTATCCAAATTGTGGAAGATATTGATATTATATCCTAGAATGACCATATCATCATAATTATTGATACTAAAAAAATATGAACTTAGCCAGATTCTTCTTTTTGACATAAGGGATAGAGTGGGCTTTTTTGTATGGTTGCTTTCACTAAGGACAAATCAAGAAGAATCAAAATATCACCTCTTGAACCACTATAACTACTTCTAGCCTCACGCACTAGTTGAGGATAAATCTCTTAATTCTGTTCATATTTATATTGTAATTAACAAATCTTTGCTCTTTTAAATCTTTGAGTTTCCTTACTTCTTGCAGCCCTGCAGCTATGGCCTCCGATGGCAGCCTTAGTGTTTCGGTTTCCACATCTCCTAAACATGCAAACAGAGATGCTGAAACCGTGAGGTCGAATTCGCCAAAAGGCCAGTGTTTATGCTCGCCCACGATGCATCAAGGCTCCTTTAGATGTCGGCTTCATCGTTCGACATCGTCGGCATGGATGAAACGTTCAAAATCAATGCCTACCAACAACCCTGTGGCTTCTCTTTCTCCCAAAGAATCTCTTGAGTCTTCCTAAGGCCATGGACCATGTGGATAAAGCTGAATACATGTAACACGCCTTAAACTTATATCCTTTTAGTTATGGAGAAGAGAAGCTTTAGTTCTATATCTCAACTTTCTATGCAATATAATATATACATATATATAATATGTTTGAATATATGTCTGAAAAGTAACTTTCTTTGAAAATTCTTTGGTCTGGGTATAGATTAAGTTGGTCGAGTTATATCGTTCTTTCTTGAAATACAACCATCATGGATTGGTCTTGTGAATTAATTTTCTAGTAGTTTCCTCGACATTTAACTGTTGTAGGGTTAAGTTGGTTGTCCTGTGAGTCGAGTTGCTCATAAGTTGGACTAAACACTCACGAATGTAAAAAAAAAATGTATTTTATTCGATCTTGGATTTGTAAATGAGAAAGTAGTTTGTTCAGGAATGCATGGAGTGAAAAGAAAGATATCCAGTGGATGTGATTGGCTATGGATTTAAAAGAAAAGAAAGGTAAAATAGAAGGCATGGCCTACCCTTATAATATTATTAGTGGGTTTGGGATTTGGTGTTTAGATTATCTCCTTGTCTTTGTTACTTGTCAACCTCATTATCTTCAATTATTGCAGCTCTTTACACACTTCTGTTCAAACCCAAATTTTTGTCTTGCTTTTTGTCTGTAATTTCATCTTCCATCTTGATTTTGATGGATTTGATTTATTTTCCTTCAAATTTAGACCACAAAATTATGTCTAATGCCTATGCCTAATAATAACAAAGAACGGAAACAACACGACGGTTGAAGGTTATTTATTGCATTGTACCAAATTTGTCACTGTTAATGTTATTTTCTTTTTTCATTCATCAGGTTTGAGATTAGCATATATTTGATAATTCAAGAACCACTTTAATCTCTCGAGTTATGGAATTTCTCTTAGGTTGTCGTTATATTAATTTAGTTGTTAGTTGATAAATGGAATAATGATGGGACATATTGAGTCAGTAAATTTCTTTTTTTATAATGATCTCCTCTTTTTTTTTCTAATGATCTCCTCTCCCCGTAACACGAAGAGCGGGACAAAGAGCTTGCCCATGGGTTTTGCCCTTAGTTTGTTGTTTTGTTTGTTACACCATACCAAATTACACAATGTTAACTGCTTTATAATGTTGAATTGTTAAGTGTATAGGCCTAATCAAACCAATTTTAAAATTTTAGAGACTATAGGCTATACGTATAAGGAATCTTATGGACTAATACTCATGTGCTTTGTGTTTTATGGTTATATTTTTATAACAAGTTTTTAAATAATTCAAATTGTGTGTGTGTGTGAGAAAAATCAATTGATGATAATGGATGATGTTTGTTCATTTGAGATGTTAGGGTCAATGATTCATTTACTAGCTATAGTTAATGTAAGATTGATTTCTCATTTTATTCAATATTTTCACCAATATTTCTATTTTTTATTGTCGATGTTTACGTTATATCGCATAGAGAAAAAATCACAAAACATATATATGATTTAAATAAGACATGTAACTGAATTCAATAGACTAAGTACTTGTGACTTAATTAATTCAAATTATTGAAAAAGT

mRNA sequence

ATGGCCTCCGATGGCAGCCTTAGTGTTTCGGTTTCCACATCTCCTAAACATGCAAACAGAGATGCTGAAACCGTGAGGTCGAATTCGCCAAAAGGCCAGTGTTTATGCTCGCCCACGATGCATCAAGGCTCCTTTAGATGTCGGCTTCATCGTTCGACATCGTCGGCATGGATGAAACGTTCAAAATCAATGCCTACCAACAACCCTGTGGCTTCTCTTTCTCCCAAAGAATCTCTTGAGTCTTCCTAA

Coding sequence (CDS)

ATGGCCTCCGATGGCAGCCTTAGTGTTTCGGTTTCCACATCTCCTAAACATGCAAACAGAGATGCTGAAACCGTGAGGTCGAATTCGCCAAAAGGCCAGTGTTTATGCTCGCCCACGATGCATCAAGGCTCCTTTAGATGTCGGCTTCATCGTTCGACATCGTCGGCATGGATGAAACGTTCAAAATCAATGCCTACCAACAACCCTGTGGCTTCTCTTTCTCCCAAAGAATCTCTTGAGTCTTCCTAA

Protein sequence

MASDGSLSVSVSTSPKHANRDAETVRSNSPKGQCLCSPTMHQGSFRCRLHRSTSSAWMKRSKSMPTNNPVASLSPKESLESS*
Homology
BLAST of CsaV3_2G002290 vs. NCBI nr
Match: KGN60621.1 (hypothetical protein Csa_019426 [Cucumis sativus])

HSP 1 Score: 161.4 bits (407), Expect = 3.4e-36
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 0

Query: 1  MASDGSLSVSVSTSPKHANRDAETVRSNSPKGQCLCSPTMHQGSFRCRLHRSTSSAWMKR 60
          MASDGSLSVSVSTSPKHANRDAETVRSNSPKGQCLCSPTMHQGSFRCRLHRSTSSAWMKR
Sbjct: 1  MASDGSLSVSVSTSPKHANRDAETVRSNSPKGQCLCSPTMHQGSFRCRLHRSTSSAWMKR 60

Query: 61 SKSMPTNNPVASLSPKESLESS 83
          SKSMPTNNPVASLSPKESLESS
Sbjct: 61 SKSMPTNNPVASLSPKESLESS 82

BLAST of CsaV3_2G002290 vs. NCBI nr
Match: KAA0061558.1 (hypothetical protein E6C27_scaffold41G001200 [Cucumis melo var. makuwa])

HSP 1 Score: 149.4 bits (376), Expect = 1.3e-32
Identity = 76/82 (92.68%), Postives = 78/82 (95.12%), Query Frame = 0

Query: 1  MASDGSLSVSVSTSPKHANRDAETVRSNSPKGQCLCSPTMHQGSFRCRLHRSTSSAWMKR 60
          MASDGSL VSVSTSPKHANRDAET+RS+SPKGQCLCSPTMHQGSFRCRLHRSTSSAWMKR
Sbjct: 1  MASDGSLGVSVSTSPKHANRDAETMRSSSPKGQCLCSPTMHQGSFRCRLHRSTSSAWMKR 60

Query: 61 SKSMPTNNPVASLSPKESLESS 83
          SKSMP NNPVASLSPK SL SS
Sbjct: 61 SKSMPANNPVASLSPKGSLGSS 82

BLAST of CsaV3_2G002290 vs. NCBI nr
Match: TYK10714.1 (hypothetical protein E5676_scaffold332G00230 [Cucumis melo var. makuwa])

HSP 1 Score: 147.9 bits (372), Expect = 3.9e-32
Identity = 75/82 (91.46%), Postives = 78/82 (95.12%), Query Frame = 0

Query: 1  MASDGSLSVSVSTSPKHANRDAETVRSNSPKGQCLCSPTMHQGSFRCRLHRSTSSAWMKR 60
          MASDGSL VSVS+SPKHANRDAET+RS+SPKGQCLCSPTMHQGSFRCRLHRSTSSAWMKR
Sbjct: 1  MASDGSLGVSVSSSPKHANRDAETMRSSSPKGQCLCSPTMHQGSFRCRLHRSTSSAWMKR 60

Query: 61 SKSMPTNNPVASLSPKESLESS 83
          SKSMP NNPVASLSPK SL SS
Sbjct: 61 SKSMPANNPVASLSPKGSLGSS 82

BLAST of CsaV3_2G002290 vs. NCBI nr
Match: KAG7030425.1 (hypothetical protein SDJN02_08772 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 144.1 bits (362), Expect = 5.6e-31
Identity = 74/82 (90.24%), Postives = 77/82 (93.90%), Query Frame = 0

Query: 1   MASDGSLSVSVSTSPKHANRDAETVRSNSPKGQCLCSPTMHQGSFRCRLHRSTSSAWMKR 60
           MASDGSLSV VSTSPKH NRDAETVRS+SPKGQCLCSPTMHQGSFRCRLHRSTSSAWMKR
Sbjct: 55  MASDGSLSVVVSTSPKHGNRDAETVRSSSPKGQCLCSPTMHQGSFRCRLHRSTSSAWMKR 114

Query: 61  SKSMPTNNPVASLSPKESLESS 83
           SKSMP ++PVASLS KESL SS
Sbjct: 115 SKSMPADHPVASLSSKESLGSS 136

BLAST of CsaV3_2G002290 vs. NCBI nr
Match: KAG6586427.1 (hypothetical protein SDJN03_19160, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 141.7 bits (356), Expect = 2.8e-30
Identity = 72/82 (87.80%), Postives = 76/82 (92.68%), Query Frame = 0

Query: 1   MASDGSLSVSVSTSPKHANRDAETVRSNSPKGQCLCSPTMHQGSFRCRLHRSTSSAWMKR 60
           MAS+GSLSV VS SPKH NRDAET+RS+SPKGQCLCSPTMHQGSFRCRLHRSTSSAWMKR
Sbjct: 60  MASNGSLSVVVSASPKHDNRDAETMRSSSPKGQCLCSPTMHQGSFRCRLHRSTSSAWMKR 119

Query: 61  SKSMPTNNPVASLSPKESLESS 83
           SKSMP N PVASLSPKE+L SS
Sbjct: 120 SKSMPANKPVASLSPKETLGSS 141

BLAST of CsaV3_2G002290 vs. ExPASy TrEMBL
Match: A0A0A0LKU3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G004705 PE=4 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 1.6e-36
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 0

Query: 1  MASDGSLSVSVSTSPKHANRDAETVRSNSPKGQCLCSPTMHQGSFRCRLHRSTSSAWMKR 60
          MASDGSLSVSVSTSPKHANRDAETVRSNSPKGQCLCSPTMHQGSFRCRLHRSTSSAWMKR
Sbjct: 1  MASDGSLSVSVSTSPKHANRDAETVRSNSPKGQCLCSPTMHQGSFRCRLHRSTSSAWMKR 60

Query: 61 SKSMPTNNPVASLSPKESLESS 83
          SKSMPTNNPVASLSPKESLESS
Sbjct: 61 SKSMPTNNPVASLSPKESLESS 82

BLAST of CsaV3_2G002290 vs. ExPASy TrEMBL
Match: A0A5A7V1X5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold41G001200 PE=4 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 6.4e-33
Identity = 76/82 (92.68%), Postives = 78/82 (95.12%), Query Frame = 0

Query: 1  MASDGSLSVSVSTSPKHANRDAETVRSNSPKGQCLCSPTMHQGSFRCRLHRSTSSAWMKR 60
          MASDGSL VSVSTSPKHANRDAET+RS+SPKGQCLCSPTMHQGSFRCRLHRSTSSAWMKR
Sbjct: 1  MASDGSLGVSVSTSPKHANRDAETMRSSSPKGQCLCSPTMHQGSFRCRLHRSTSSAWMKR 60

Query: 61 SKSMPTNNPVASLSPKESLESS 83
          SKSMP NNPVASLSPK SL SS
Sbjct: 61 SKSMPANNPVASLSPKGSLGSS 82

BLAST of CsaV3_2G002290 vs. ExPASy TrEMBL
Match: A0A5D3CHP3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold332G00230 PE=4 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 1.9e-32
Identity = 75/82 (91.46%), Postives = 78/82 (95.12%), Query Frame = 0

Query: 1  MASDGSLSVSVSTSPKHANRDAETVRSNSPKGQCLCSPTMHQGSFRCRLHRSTSSAWMKR 60
          MASDGSL VSVS+SPKHANRDAET+RS+SPKGQCLCSPTMHQGSFRCRLHRSTSSAWMKR
Sbjct: 1  MASDGSLGVSVSSSPKHANRDAETMRSSSPKGQCLCSPTMHQGSFRCRLHRSTSSAWMKR 60

Query: 61 SKSMPTNNPVASLSPKESLESS 83
          SKSMP NNPVASLSPK SL SS
Sbjct: 61 SKSMPANNPVASLSPKGSLGSS 82

BLAST of CsaV3_2G002290 vs. ExPASy TrEMBL
Match: A0A6J1G498 (uncharacterized protein LOC111450652 OS=Cucurbita moschata OX=3662 GN=LOC111450652 PE=4 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 1.3e-30
Identity = 73/82 (89.02%), Postives = 76/82 (92.68%), Query Frame = 0

Query: 1   MASDGSLSVSVSTSPKHANRDAETVRSNSPKGQCLCSPTMHQGSFRCRLHRSTSSAWMKR 60
           MASDGSLSV VSTSPKH NRDAETVRS+SPKGQCLCSPTMHQGSFRCRLHRS SSAWMKR
Sbjct: 43  MASDGSLSVVVSTSPKHGNRDAETVRSSSPKGQCLCSPTMHQGSFRCRLHRSMSSAWMKR 102

Query: 61  SKSMPTNNPVASLSPKESLESS 83
           SKSMP ++PVASLS KESL SS
Sbjct: 103 SKSMPADHPVASLSSKESLGSS 124

BLAST of CsaV3_2G002290 vs. ExPASy TrEMBL
Match: A0A061GNT6 (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_037897 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 5.9e-18
Identity = 58/83 (69.88%), Postives = 68/83 (81.93%), Query Frame = 0

Query: 1  MASDGSLSVSVSTSPKHANRDAETVRSNSPK-GQCLCSPTMHQGSFRCRLHRSTSSAWMK 60
          MAS G  +++VSTSPK +N +A  V +NSPK GQCLCSPT HQGSFRCR HRS+SSAWMK
Sbjct: 1  MASHG--NITVSTSPKGSNSEA-AVPTNSPKGGQCLCSPTTHQGSFRCRFHRSSSSAWMK 60

Query: 61 RSKSMPTNNPVASLSPKESLESS 83
          RSKSMP N  +ASLSPK S+ES+
Sbjct: 61 RSKSMPANGSLASLSPK-SVEST 79

BLAST of CsaV3_2G002290 vs. TAIR 10
Match: AT3G13227.1 (serine-rich protein-related )

HSP 1 Score: 48.5 bits (114), Expect = 3.0e-06
Identity = 21/42 (50.00%), Postives = 28/42 (66.67%), Query Frame = 0

Query: 26 RSNSPKGQCLCSPTMHQGSFRCRLHRSTSSAWMKRSKSMPTN 68
          +S+S +  CLC+PT H GSFRCR HR  +   M R  S+P+N
Sbjct: 57 KSSSVRQNCLCAPTTHPGSFRCRYHRRNAGLGMSRGTSVPSN 98

BLAST of CsaV3_2G002290 vs. TAIR 10
Match: AT1G67910.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G24577.1); Has 167 Blast hits to 167 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 167; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 44.3 bits (103), Expect = 5.6e-05
Identity = 21/39 (53.85%), Postives = 29/39 (74.36%), Query Frame = 0

Query: 26 RSNSPKGQCLCSPTMHQGSFRCRLHRSTSSAWMKRSKSM 65
          +++  K  CLCSPT H GSFRCR+HRS S   ++R+KS+
Sbjct: 36 QTSMTKTNCLCSPTTHPGSFRCRIHRSLS---LQRTKSI 71

BLAST of CsaV3_2G002290 vs. TAIR 10
Match: AT1G67910.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G24577.1). )

HSP 1 Score: 44.3 bits (103), Expect = 5.6e-05
Identity = 21/39 (53.85%), Postives = 29/39 (74.36%), Query Frame = 0

Query: 26 RSNSPKGQCLCSPTMHQGSFRCRLHRSTSSAWMKRSKSM 65
          +++  K  CLCSPT H GSFRCR+HRS S   ++R+KS+
Sbjct: 36 QTSMTKTNCLCSPTTHPGSFRCRIHRSLS---LQRTKSI 71

BLAST of CsaV3_2G002290 vs. TAIR 10
Match: AT1G24577.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G67910.2); Has 115 Blast hits to 115 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 115; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 43.5 bits (101), Expect = 9.6e-05
Identity = 19/34 (55.88%), Postives = 27/34 (79.41%), Query Frame = 0

Query: 34 CLCSPTMHQGSFRCRLHRSTSSAWMKRSKSMPTN 68
          C+CSPT H GSF+C+LHR+ S   ++R+KS+ TN
Sbjct: 32 CICSPTTHPGSFKCKLHRTPS---LQRNKSVETN 62

BLAST of CsaV3_2G002290 vs. TAIR 10
Match: AT3G56500.1 (serine-rich protein-related )

HSP 1 Score: 42.0 bits (97), Expect = 2.8e-04
Identity = 18/42 (42.86%), Postives = 28/42 (66.67%), Query Frame = 0

Query: 31  KGQCLCSPTMHQGSFRCRLHRSTSSAWMKRSKSMPTNNPVAS 73
           K  C+C+PT H+GSFRCRLHRS++++    +  +    P+ S
Sbjct: 62  KTVCICAPTKHEGSFRCRLHRSSATSHGAATAELHLPKPLLS 103

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KGN60621.13.4e-36100.00hypothetical protein Csa_019426 [Cucumis sativus][more]
KAA0061558.11.3e-3292.68hypothetical protein E6C27_scaffold41G001200 [Cucumis melo var. makuwa][more]
TYK10714.13.9e-3291.46hypothetical protein E5676_scaffold332G00230 [Cucumis melo var. makuwa][more]
KAG7030425.15.6e-3190.24hypothetical protein SDJN02_08772 [Cucurbita argyrosperma subsp. argyrosperma][more]
KAG6586427.12.8e-3087.80hypothetical protein SDJN03_19160, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LKU31.6e-36100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G004705 PE=4 SV=1[more]
A0A5A7V1X56.4e-3392.68Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3CHP31.9e-3291.46Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A6J1G4981.3e-3089.02uncharacterized protein LOC111450652 OS=Cucurbita moschata OX=3662 GN=LOC1114506... [more]
A0A061GNT65.9e-1869.88Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_037897 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT3G13227.13.0e-0650.00serine-rich protein-related [more]
AT1G67910.15.6e-0553.85unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT1G67910.25.6e-0553.85unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT1G24577.19.6e-0555.88unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT3G56500.12.8e-0442.86serine-rich protein-related [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..82
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..18
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 25..82
NoneNo IPR availablePANTHERPTHR33132OSJNBB0118P14.9 PROTEINcoord: 1..76
NoneNo IPR availablePANTHERPTHR33132:SF37SERINE-RICH PROTEIN-LIKE PROTEINcoord: 1..76

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_2G002290.1CsaV3_2G002290.1mRNA