CsaV3_2G002190 (gene) Cucumber (Chinese Long) v3
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.AAAAACGACACCGTTTGGAACTTGAAAGCTTGACAAAACCCTTCTCTAATGCTTTGAACCCCAATTTTCGTTACACTGCCTCAAAGCTTCACTCAGAACGAAGAAATCTCCAATGGCGTCCTTAAAAGCAGTTTCTCGGTTATCATCCCGCTTGCAATCACTCGCTCCAAAGTTCAACAAAAGGTCTTCATCTTCTGAGCTATTTTCATTCAAATCTACTTGTCAATCTCAGCCTTCCGCAGCTTCTACATCGCGTCTTCATTGTACTTCGCGGTTAGACTTGTCTATTCCCTCCATTTTCAATACCATTCATCTTATAATCATAGAATCATCAGTTACAGAAAGAAATTCGGTTCAATTCTTAACCGTGGAATAGATTTTTACCACAGGTTACCAGTGGAGTTGAGTAGTCAGGGGTCATTGATGCCATTGCACAGCGCTATAGCTGCAGCTAGATTAATTTCAAGTCTGACCATTGAATCTCAAGGATGGGGTTTGGTTCCTCAGGGTATGTTTTGCTTAAGTTTCTTCTTGCATCTGGGTCTTGTGAATGCTGATGATTCTCCATTATTGTATGTGCTCGAGGAATGTAGCCAAAGAAGCATTCCAAATATCCTTTTGTTTGTTCACACTTCATAGAATTTTTTTCTCTCGAAATAATGTGGGTTATTTTTTTCATTTTTAGGATGATCATAGTTTGGGTCTAGTTCAATGCATATGTCTTGCGGAATTCTAGTACGATTGAGTTAATCGGCATGGTGTTTGCCTGTACTACTAGAATTGTCATGACCTTTGAATTGTGATTAGAGTCACATAAATGAAAATGATGGATGGAATACATCACTTTGATTGGTGTATGAAGGCACATGCAATCAACTTTAGTATTTGAACGAAAATTTAATATAACTGATCATACATACGAAGTAGCGATAGTTGATTTCACAGGTTTAGCATTAGTCTAGTTTTTCAACACCTTAACTGTGGTCGATTACTTTTATGTGTTGACTCTTCTAGTTTTTCACCAAGCTTCAAAGTAGTATCAACTATCATCAAGTGATGTTGTTTTCAACTAGTTGATGATTAAGAATATTTCTGTTGTTCAATTTATGAACCCTTACAATAAATTGTGATGCTATCTCAACATTAGTGTCATTGTATCATTTTTATTCTATCTATTATTACCACTGTCTGAAATGTGAGTCCCGTACTAATTCTATCTATTATTACCGTATCTTAGTTATTTTCAATGGATATCACTTGATCCTACACTCCACAGTACTAGAGAACTTAGAATTAATGGTTGTCATGACTCATGGGTCGTCTCTAAACAAGCTTTTGGTGGGTGCAAGTGTTTGGACTATTTGGCCGGAAAGTATTCAAAGAAATGGGATTGTTGAACATTTATGTTTTCTCCACCTGCAATAGACTTTTGAACCTTTTGAACCTCTTTTGTTATTTGAGTTATTGTAGTTTTTATTCAATTGGTGTTAAAGTTAAGAGCAGGGAGAGTTCCTTTTTTGTGTGGGCGTTTAATTTGTGGCTGTGCTCTTCATCCCTCACCACCCCCCCCCCCCCCCCCCCCCCCCCAATGTAAAATCCTCCTTTGGACAAATACCTTCTTCATTCAAATGTTGTCACATCTCATGGTGACAATAAAACTATCTTTTGTTCTATTGAAGAGAGTAATGTATTTGATATCTTTTGTTCTCTGTAAAAAAAAACATTACTAATTTCCAATGGGATGATACCCTAGAAGTTGGTAGCATAATTGTTTATTACTCCGCTTGCTCCTGCACCCTCAAATGGTATATGCTTGTTCGGTTGGCTATGAGGATAACAACTCTTTTGTTGTTGTTCATTCTTTGCTGGTTCACTGGGAAGTTTTGGGGGTTGCTATTTTGTTTTTGTGGTCTTGGGTAGCTCTTCCAAAAACGAAGCTGTATACTTCAGATGCTACTACGTTCAAAATTCAGAAACCAGGCTAAATCAATCTAGACTAATGCGATATTGATTATCTCTGTGTGAGGCTTGGAGAGTGAAAATAGTAGGAATTGTTGCAAAAATCGAGGTAATCAAATTGTTGGCATCTAAACTTCAGTTAGATGTCTAGTAGCCTTTCTCATCCCTTTTGTTTTCTTTACAGTATTTGTAATACAGAGTTTATCTCGAGAAAAGTTACTATTTTTGTCTTCCCAATAATAAACACTAATGAAAACTTCTGTGCTTGACAACGAGAAGAGTAAGAGTGTGAAAGTGCAGGCTAAAGAAAAACATCTTGGGGCGTTTGTGGCACTAGTTCAGCATCTTCAAGCCTAGGTTTAATGTGTTTAGGGGTTTAGGTTGATGGTTAGGGAAGTCGTTGGGGTTCAGGTTTTGGAAGCATAGATTTAAATCAGTGTGAACCGTGAGGGGGTTTGAATAGTGGGTTATTGTTCAAACTCGTTTGTTCCTCTTATAAAATTCGGTTTTGAAAACTCCTCATTCTAAACATTGTTTAGGCTTGGATAGCTAAACCCATGTCCCAAATGCTTCTTTACAGCTGTAACGTTATATTATCTTTGCCCTTTGGTCACAAAATGACTTCTGAGTACTAACATTAATTTTTGTTAATTTCATTCATGGGAGAAAGTTATGCATCCAATTTTGTAGTTCATCATTTCAAGTAGTTTCATGCAAGACAAGAACCCTCTTTGATGCTGTTTTATCTTTCCTGCAGGTATTTCAATGCCTTTATGACAGGCTTTGCTATGCAGGAACTTGTTCTTTGTAGCTTTCTTTTGATTGACAATTGGGGTTTCTTCTTACTTCTAGTTCTTTACAATCTACAAGAATGTAAACCTAAATTATTGCCTCTGATTTTCTTTTTGGTCCTAAATTGGATGAGGTTTAAAGTTAAATTTCATCTTGTAATGAATCCAAGTGATTGATATACAACTTTCATGATTGTTGAATTTGTTACCCTTGGAAAAGATGATGTAACGATGCTTTGAAGGACAATCTTGTTACAAATAGAATGGTTATGGATTCTTCCTCTAGGATTCTTTTGAT ATGGCGTCCTTAAAAGCAGTTTCTCGGTTATCATCCCGCTTGCAATCACTCGCTCCAAAGTTCAACAAAAGGTCTTCATCTTCTGAGCTATTTTCATTCAAATCTACTTGTCAATCTCAGCCTTCCGCAGCTTCTACATCGCGTCTTCATTGTACTTCGCGGTTACCAGTGGAGTTGAGTAGTCAGGGGTCATTGATGCCATTGCACAGCGCTATAGCTGCAGCTAGATTAATTTCAAGTCTGACCATTGAATCTCAAGGATGGGGTTTGGTTCCTCAGGGTATTTCAATGCCTTTATGA ATGGCGTCCTTAAAAGCAGTTTCTCGGTTATCATCCCGCTTGCAATCACTCGCTCCAAAGTTCAACAAAAGGTCTTCATCTTCTGAGCTATTTTCATTCAAATCTACTTGTCAATCTCAGCCTTCCGCAGCTTCTACATCGCGTCTTCATTGTACTTCGCGGTTACCAGTGGAGTTGAGTAGTCAGGGGTCATTGATGCCATTGCACAGCGCTATAGCTGCAGCTAGATTAATTTCAAGTCTGACCATTGAATCTCAAGGATGGGGTTTGGTTCCTCAGGGTATTTCAATGCCTTTATGA MASLKAVSRLSSRLQSLAPKFNKRSSSSELFSFKSTCQSQPSAASTSRLHCTSRLPVELSSQGSLMPLHSAIAAARLISSLTIESQGWGLVPQGISMPL* Homology
BLAST of CsaV3_2G002190 vs. NCBI nr
Match: XP_004139345.1 (uncharacterized protein LOC101209110 [Cucumis sativus] >KGN60611.1 hypothetical protein Csa_019508 [Cucumis sativus]) HSP 1 Score: 181.0 bits (458), Expect = 5.0e-42 Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 0
BLAST of CsaV3_2G002190 vs. NCBI nr
Match: XP_008458440.1 (PREDICTED: uncharacterized protein LOC103497847 isoform X1 [Cucumis melo]) HSP 1 Score: 176.8 bits (447), Expect = 9.4e-41 Identity = 97/99 (97.98%), Postives = 98/99 (98.99%), Query Frame = 0
BLAST of CsaV3_2G002190 vs. NCBI nr
Match: KAA0061549.1 (protein NUCLEAR FUSION DEFECTIVE 6 [Cucumis melo var. makuwa] >TYK10723.1 protein NUCLEAR FUSION DEFECTIVE 6 [Cucumis melo var. makuwa]) HSP 1 Score: 167.5 bits (423), Expect = 5.7e-38 Identity = 92/95 (96.84%), Postives = 94/95 (98.95%), Query Frame = 0
BLAST of CsaV3_2G002190 vs. NCBI nr
Match: XP_008458447.1 (PREDICTED: uncharacterized protein LOC103497847 isoform X2 [Cucumis melo]) HSP 1 Score: 164.9 bits (416), Expect = 3.7e-37 Identity = 91/93 (97.85%), Postives = 92/93 (98.92%), Query Frame = 0
BLAST of CsaV3_2G002190 vs. NCBI nr
Match: XP_038889658.1 (uncharacterized protein LOC120079520 [Benincasa hispida]) HSP 1 Score: 164.5 bits (415), Expect = 4.8e-37 Identity = 92/99 (92.93%), Postives = 92/99 (92.93%), Query Frame = 0
BLAST of CsaV3_2G002190 vs. ExPASy TrEMBL
Match: A0A0A0LKT5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G004120 PE=4 SV=1) HSP 1 Score: 181.0 bits (458), Expect = 2.4e-42 Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 0
BLAST of CsaV3_2G002190 vs. ExPASy TrEMBL
Match: A0A1S3C7U8 (uncharacterized protein LOC103497847 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103497847 PE=4 SV=1) HSP 1 Score: 176.8 bits (447), Expect = 4.5e-41 Identity = 97/99 (97.98%), Postives = 98/99 (98.99%), Query Frame = 0
BLAST of CsaV3_2G002190 vs. ExPASy TrEMBL
Match: A0A5A7V7B3 (Protein NUCLEAR FUSION DEFECTIVE 6 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold332G00330 PE=4 SV=1) HSP 1 Score: 167.5 bits (423), Expect = 2.8e-38 Identity = 92/95 (96.84%), Postives = 94/95 (98.95%), Query Frame = 0
BLAST of CsaV3_2G002190 vs. ExPASy TrEMBL
Match: A0A1S3C7Z3 (uncharacterized protein LOC103497847 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103497847 PE=4 SV=1) HSP 1 Score: 164.9 bits (416), Expect = 1.8e-37 Identity = 91/93 (97.85%), Postives = 92/93 (98.92%), Query Frame = 0
BLAST of CsaV3_2G002190 vs. ExPASy TrEMBL
Match: A0A6J1G399 (uncharacterized protein LOC111450380 OS=Cucurbita moschata OX=3662 GN=LOC111450380 PE=4 SV=1) HSP 1 Score: 161.4 bits (407), Expect = 2.0e-36 Identity = 89/99 (89.90%), Postives = 93/99 (93.94%), Query Frame = 0
BLAST of CsaV3_2G002190 vs. TAIR 10
Match: AT1G55205.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G13674.1); Has 137 Blast hits to 137 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 137; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 89.0 bits (219), Expect = 2.4e-18 Identity = 53/99 (53.54%), Postives = 73/99 (73.74%), Query Frame = 0
BLAST of CsaV3_2G002190 vs. TAIR 10
Match: AT3G13674.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 11 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G55205.1); Has 76 Blast hits to 76 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 76; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 82.0 bits (201), Expect = 2.9e-16 Identity = 55/101 (54.46%), Postives = 76/101 (75.25%), Query Frame = 0
BLAST of CsaV3_2G002190 vs. TAIR 10
Match: AT1G55205.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G13674.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). ) HSP 1 Score: 80.1 bits (196), Expect = 1.1e-15 Identity = 49/96 (51.04%), Postives = 69/96 (71.88%), Query Frame = 0
BLAST of CsaV3_2G002190 vs. TAIR 10
Match: AT4G39300.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). ) HSP 1 Score: 48.9 bits (115), Expect = 2.7e-06 Identity = 28/76 (36.84%), Postives = 46/76 (60.53%), Query Frame = 0
BLAST of CsaV3_2G002190 vs. TAIR 10
Match: AT4G39300.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G11630.2); Has 89 Blast hits to 89 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 89; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 44.7 bits (104), Expect = 5.2e-05 Identity = 26/75 (34.67%), Postives = 44/75 (58.67%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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