CsaV3_2G001500 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_2G001500
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr2: 423620 .. 423799 (-)
RNA-Seq Expression	CsaV3_2G001500
Synteny	CsaV3_2G001500

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTCTCAAGTTTATTGTGGGCTGGGCCCAAGTCAAACTCGGGCCTGAACAAAATAGCTTTATGGATCCAAAGTTGGTAAACGGCGCCGTTTCGTTTCGCGGTAGAATTAAATTAACAGACGAAGTAGAAGAACTCGAAAATTTGCTGCATAGAGGACGGCGGCAATGGCGTACCTGA

mRNA sequence

ATGGCTCTCAAGTTTATTGTGGGCTGGGCCCAAGTCAAACTCGGGCCTGAACAAAATAGCTTTATGGATCCAAAGTTGGTAAACGGCGCCGTTTCGTTTCGCGGTAGAATTAAATTAACAGACGAAGTAGAAGAACTCGAAAATTTGCTGCATAGAGGACGGCGGCAATGGCGTACCTGA

Coding sequence (CDS)

ATGGCTCTCAAGTTTATTGTGGGCTGGGCCCAAGTCAAACTCGGGCCTGAACAAAATAGCTTTATGGATCCAAAGTTGGTAAACGGCGCCGTTTCGTTTCGCGGTAGAATTAAATTAACAGACGAAGTAGAAGAACTCGAAAATTTGCTGCATAGAGGACGGCGGCAATGGCGTACCTGA

Protein sequence

MALKFIVGWAQVKLGPEQNSFMDPKLVNGAVSFRGRIKLTDEVEELENLLHRGRRQWRT*

Homology

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BLAST of CsaV3_2G001500 vs. NCBI nr
Match: KAE8651495.1 (hypothetical protein Csa_019397 [Cucumis sativus])

HSP 1 Score: 125.2 bits (313), Expect = 1.9e-25
Identity = 59/59 (100.00%), Postives = 59/59 (100.00%), Query Frame = 0


Query: 1  MALKFIVGWAQVKLGPEQNSFMDPKLVNGAVSFRGRIKLTDEVEELENLLHRGRRQWRT 60
          MALKFIVGWAQVKLGPEQNSFMDPKLVNGAVSFRGRIKLTDEVEELENLLHRGRRQWRT
Sbjct: 1  MALKFIVGWAQVKLGPEQNSFMDPKLVNGAVSFRGRIKLTDEVEELENLLHRGRRQWRT 59

The following BLAST results are available for this feature:

BLAST of CsaV3_2G001500 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8651495.1	1.9e-25	100.00	hypothetical protein Csa_019397 [Cucumis sativus]	[more]

BLAST of CsaV3_2G001500 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_2G001500 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_2G001500 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 36..56

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_2G001500.1	CsaV3_2G001500.1	mRNA