CsaV3_1G046300 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_1G046300
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	mediator of RNA polymerase II transcription subunit 22b-like
Location	chr1: 32124871 .. 32127976 (+)
RNA-Seq Expression	CsaV3_1G046300
Synteny	CsaV3_1G046300

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GAAAATTGAGAATCGTGTCATGAAAGATTATGTAAGCAGATTTGGCACTTCTCAACTTTTTTTTTTCTCTATAATAAAAGGACATAAAACCCATGGGATTTTCTTCCCTTTTTTCTTGGTGGGCTAAATTTTTATAAGAGCCCATTAACGACCCATATCTAAGCCCATCTCAACTATTGAATTCCACTCGGTGTCTAGGGCTTCGTCATCCTCTGTTCGTGTTGCTTTTTTGTAACGCCGGCAACGCCCATAAGCTCCGACCATCGACACGGCCACACCTTCCACGAACTATCACCGACGACGTTCCACCAGAGTTTTTCTCCATTTTTGTCGACGTGTTATAGACCCACTCTCATTCAACCTCAAATTTGAGTTTCCCATTTCTTAATTGGTTAGTTATATTACATGTTAGAATTTGGGAAAGTCTTGTTGAACTGGTTAGAAAGTGTTTTGAAGATTAGTTTTCTTGATTGGATTTATAGTTTAAATTGTTAATGGTTATGTTTGTCGTGTTAAATTTTTGGGCGTTACATTTTTCTTCCCCAATGGTTCTAATTCCCTTTCGTTTCGATCGCCTTGGCGTCATTGCAGAATTGATTCAATTCCCATTTCTATCTATTATTATGAACAAAGGCATCGGTGGTGGAACTGGCCCCACTGCAGCGGCTGCGGCGGCGGCAGCTCAGAAGCAGAAACTGCTTCTCCAGAGAGTGGAAACTGATATAGCCAATATTGTTGACAATTTCACTCATCTTGTCAACGTCTCTAGAGTAAAACTCTTTCATTTTTATTGTAATTCTCTTTTGTGGTTTATCTGCTTGATCTTCTTGATTTAACAACCTCATGTGTGGAATTCATAATTAACTTACCGTTGTTTCGTCAGGTGAACGATCCACCAGTTAGAAACTCACAAGAATCTTTCATGATGGAAATGCGTGCGGCCAGAATGGTAAGATACTATATTTTCCCTTGATTGTTTACTCTCTTTGTTTGTGATGCTCCTTTTAGGTTGCCATCTGGATAGATAGATAGCTCTTTTGTTCTTCTACAATTGAATGATAATAATCTTATGAAGCCTTGATTTTGTGGGATTGAATGATTTTGCAATAAATTTAGTTGCTTATGCGTCTCTTCCAACATCAGTGAGTATTTCTTCTCCTCTAGCTCCTATTCCAAGAAAATTCTCTTCTTTAGTTGAGGTGGTCTTCATATTCGAATATTTTTGCGGGATCCCAATTGATTCTTCAGAAAAACTTAATTGAGCTTACCTTAGCAATTCATGCAACATCTCGCCTCGATTTGGTTTTAGTTCATGCAATAACAACAGTTGTTTTTTACCAAAAAGTTCATGAAATCATTATGGAGCTTCAATGAAGTCGGTTGGGTTAATGTTGAATCTACTGCGAGATGGAGTGTTTTACTGATTTTGTAGGATGATATGAAGATAAAAGTTTTGGTGTTTCTTAAAGGAGGGTACATTTTCTCAATTAAAATCTATTTTCAGCACAAGTCAATTTGTTGGGTAACAAAGATTTATGGGCTAATTGACTGTAGAGAAATTTTGATAGACCGTCATGTCATAGCATTTGTAGAACAGTTGGTGGTGAGATCTTTTTTAGAGAAAGTATTTTGGCCTGCTTTTGGTAGTTAATTTATTGGTTCTTGTTATCAGCTGCTGTGTATGCTTTTCAAGGTTTCTCTGGACTTGAGAGAATTGGTTTGACGAGTCTTTCTTTGTTTCTTGGCTGTTCTCACTTGATTGCAATTGTTTTAAGGTCTTGTTCTGTTCTCTTTTGGGAGTTTGTATCCTTTGAAGAAGTTATTCCTTGTTGAAAACTCTCATTTTTGGTTTCAAACTATCAAGGTTCTTATATTCATAATGATCATTCACATATAAGATTATAGGCAATAATATATCAGGGATTTATTTTGTCCTTTTCATTATTATTGTGATGGCTACAATTTAGTGTTTCTATACTTGTTTGTTAACAGGTTCAGGCAGCTGATTCTCTGCTGAAGTTGGTTTCAGAACTTAAGCAGACAGCAATATTTTCTGGATTTGCTTCACTAAACGATCATGTGGAGCAAAGAATTGTGGAATTCAATCAGCAGGCACAACAGACTGACCGTCTTTTATCTAGAATTGGTGAAGAAGCTGCTGCCAATTTGAAGGAGCTTGAATCTCATTATTATTCTTCAACACAGAGAACTGATCAGAACAGCCTGACGTGATTTAGAGTGGAAAGTGGAATTAATGATGCGATGCTGTTGGCTTCTAAACTCAGTTGCTTGCTAACATGGATAATGAAACGTAATATAACACTTCTAACTTTTTCTCTCTCGTTTTACTATAACTTCCTTCTTCACTTGAAAGTGCCTAAAAAAATAGCAAACATGATAGGAAATAAGTAACTCATTCCGTTGTCTGAATTAATTCAGAGAGGACGAAACATGTATGTTGACTTTGGCAGGTAAATTCAGAAATTAATTTTATATAGTTTGATAAGAAGATAATATAATTAATTCATGATGAATGAGGAGGCAACTAAGGAGATGATGAATAAGAAAGTAACAAGGAGAAAACAAAAAAAAGGAAGGAAGCCATTTTGATACGTTGGTAATTTGATGTTCTTCAGAAACTCCTTTATTTGATACAGGAAATCTCACTGTTGTTCATGCTTGCTTCCCTCCTCATTTCCCAACTTCAAATTGGTATATATCTTCTTCTTAATTTTGTGTAAACCTATTTCCTTTTCATGTTTTACTGTCATTTACATCTATATTTCTATGATTAATAAACACACTGCTTATTCTATAACAAACAAAAATTAAATAGTTTATATTGTTATTATTTGACAATGAAAGCTCTAAATGAAGCAAGATTGGAGGCAAATATACAATTAAAAGGAAAGGGCATTATGAAGAAATGGGCAAGTCCTTGTGCAATAGGCAAATATACATTTAAAAATCATAATCATAAGACTAACGAACACAATAAATAAATAATACAACGATGACATTTTCAACAATCATATTTTCTTACCACAGCTTTCAAAGTTAATGCATAAATTTTTTTAAAGAATTAAATATATTTGCCTCTCAACCG

mRNA sequence

ATGAACAAAGGCATCGGTGGTGGAACTGGCCCCACTGCAGCGGCTGCGGCGGCGGCAGCTCAGAAGCAGAAACTGCTTCTCCAGAGAGTGGAAACTGATATAGCCAATATTGTTGACAATTTCACTCATCTTGTCAACGTCTCTAGAGTGAACGATCCACCAGTTAGAAACTCACAAGAATCTTTCATGATGGAAATGCGTGCGGCCAGAATGGTTCAGGCAGCTGATTCTCTGCTGAAGTTGGTTTCAGAACTTAAGCAGACAGCAATATTTTCTGGATTTGCTTCACTAAACGATCATGTGGAGCAAAGAATTGTGGAATTCAATCAGCAGGCACAACAGACTGACCGTCTTTTATCTAGAATTGGTGAAGAAGCTGCTGCCAATTTGAAGGAGCTTGAATCTCATTATTATTCTTCAACACAGAGAACTGATCAGAACAGCCTGACGTGA

Coding sequence (CDS)

ATGAACAAAGGCATCGGTGGTGGAACTGGCCCCACTGCAGCGGCTGCGGCGGCGGCAGCTCAGAAGCAGAAACTGCTTCTCCAGAGAGTGGAAACTGATATAGCCAATATTGTTGACAATTTCACTCATCTTGTCAACGTCTCTAGAGTGAACGATCCACCAGTTAGAAACTCACAAGAATCTTTCATGATGGAAATGCGTGCGGCCAGAATGGTTCAGGCAGCTGATTCTCTGCTGAAGTTGGTTTCAGAACTTAAGCAGACAGCAATATTTTCTGGATTTGCTTCACTAAACGATCATGTGGAGCAAAGAATTGTGGAATTCAATCAGCAGGCACAACAGACTGACCGTCTTTTATCTAGAATTGGTGAAGAAGCTGCTGCCAATTTGAAGGAGCTTGAATCTCATTATTATTCTTCAACACAGAGAACTGATCAGAACAGCCTGACGTGA

Protein sequence

MNKGIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRIVEFNQQAQQTDRLLSRIGEEAAANLKELESHYYSSTQRTDQNSLT*

Homology

[Close]

BLAST of CsaV3_1G046300 vs. NCBI nr
Match: XP_004145443.1 (mediator of RNA polymerase II transcription subunit 22b [Cucumis sativus] >KGN66872.1 hypothetical protein Csa_007213 [Cucumis sativus])

HSP 1 Score: 280.0 bits (715), Expect = 1.2e-71
Identity = 150/150 (100.00%), Postives = 150/150 (100.00%), Query Frame = 0


Query: 1   MNKGIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQE 60
           MNKGIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQE
Sbjct: 1   MNKGIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQE 60

Query: 61  SFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRIVEFNQQAQQTDRLLS 120
           SFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRIVEFNQQAQQTDRLLS
Sbjct: 61  SFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRIVEFNQQAQQTDRLLS 120

Query: 121 RIGEEAAANLKELESHYYSSTQRTDQNSLT 151
           RIGEEAAANLKELESHYYSSTQRTDQNSLT
Sbjct: 121 RIGEEAAANLKELESHYYSSTQRTDQNSLT 150

[Close]

BLAST of CsaV3_1G046300 vs. NCBI nr
Match: XP_008459037.1 (PREDICTED: mediator of RNA polymerase II transcription subunit 22a-like isoform X1 [Cucumis melo] >KAA0043196.1 mediator of RNA polymerase II transcription subunit 22a-like isoform X1 [Cucumis melo var. makuwa] >TYK12271.1 mediator of RNA polymerase II transcription subunit 22a-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 277.3 bits (708), Expect = 7.7e-71
Identity = 148/150 (98.67%), Postives = 150/150 (100.00%), Query Frame = 0


Query: 1   MNKGIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQE 60
           MNKGIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQE
Sbjct: 48  MNKGIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQE 107

Query: 61  SFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRIVEFNQQAQQTDRLLS 120
           SFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRIVEFNQQAQQT+RLLS
Sbjct: 108 SFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRIVEFNQQAQQTERLLS 167

Query: 121 RIGEEAAANLKELESHYYSSTQRTDQNSLT 151
           RIGEEAAANLKELESHYYSSTQRTDQN+LT
Sbjct: 168 RIGEEAAANLKELESHYYSSTQRTDQNNLT 197

[Close]

BLAST of CsaV3_1G046300 vs. NCBI nr
Match: XP_008459039.1 (PREDICTED: mediator of RNA polymerase II transcription subunit 22b-like isoform X2 [Cucumis melo] >XP_008459040.1 PREDICTED: mediator of RNA polymerase II transcription subunit 22b-like isoform X2 [Cucumis melo] >XP_008459041.1 PREDICTED: mediator of RNA polymerase II transcription subunit 22b-like isoform X2 [Cucumis melo])

HSP 1 Score: 277.3 bits (708), Expect = 7.7e-71
Identity = 148/150 (98.67%), Postives = 150/150 (100.00%), Query Frame = 0


Query: 1   MNKGIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQE 60
           MNKGIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQE
Sbjct: 1   MNKGIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQE 60

Query: 61  SFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRIVEFNQQAQQTDRLLS 120
           SFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRIVEFNQQAQQT+RLLS
Sbjct: 61  SFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRIVEFNQQAQQTERLLS 120

Query: 121 RIGEEAAANLKELESHYYSSTQRTDQNSLT 151
           RIGEEAAANLKELESHYYSSTQRTDQN+LT
Sbjct: 121 RIGEEAAANLKELESHYYSSTQRTDQNNLT 150

[Close]

BLAST of CsaV3_1G046300 vs. NCBI nr
Match: XP_038891249.1 (mediator of RNA polymerase II transcription subunit 22b-like [Benincasa hispida] >XP_038891250.1 mediator of RNA polymerase II transcription subunit 22b-like [Benincasa hispida] >XP_038891251.1 mediator of RNA polymerase II transcription subunit 22b-like [Benincasa hispida] >XP_038891252.1 mediator of RNA polymerase II transcription subunit 22b-like [Benincasa hispida])

HSP 1 Score: 270.0 bits (689), Expect = 1.2e-68
Identity = 145/150 (96.67%), Postives = 147/150 (98.00%), Query Frame = 0


Query: 1   MNKGIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQE 60
           MNKGIGGG GPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQE
Sbjct: 1   MNKGIGGGIGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQE 60

Query: 61  SFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRIVEFNQQAQQTDRLLS 120
           SFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRIVEFNQQAQQTDRLLS
Sbjct: 61  SFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRIVEFNQQAQQTDRLLS 120

Query: 121 RIGEEAAANLKELESHYYSSTQRTDQNSLT 151
            IGEEAAA+LKELESHYYSSTQRT QN+LT
Sbjct: 121 TIGEEAAASLKELESHYYSSTQRTSQNNLT 150

[Close]

BLAST of CsaV3_1G046300 vs. NCBI nr
Match: KAG7029838.1 (Mediator of RNA polymerase II transcription subunit 22b [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 269.6 bits (688), Expect = 1.6e-68
Identity = 143/150 (95.33%), Postives = 147/150 (98.00%), Query Frame = 0


Query: 1   MNKGIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQE 60
           MNKGIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQE
Sbjct: 1   MNKGIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQE 60

Query: 61  SFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRIVEFNQQAQQTDRLLS 120
           SFMMEMRA+RMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRIVEFNQQA+QTDR+LS
Sbjct: 61  SFMMEMRASRMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRIVEFNQQAEQTDRILS 120

Query: 121 RIGEEAAANLKELESHYYSSTQRTDQNSLT 151
           +IGEEAA  LKELESHYYSSTQRT QNSLT
Sbjct: 121 KIGEEAAVGLKELESHYYSSTQRTSQNSLT 150

[Close]

BLAST of CsaV3_1G046300 vs. ExPASy Swiss-Prot
Match: Q8LCH5 (Mediator of RNA polymerase II transcription subunit 22b OS=Arabidopsis thaliana OX=3702 GN=MED22B PE=1 SV=1)

HSP 1 Score: 219.5 bits (558), Expect = 2.5e-56
Identity = 114/140 (81.43%), Postives = 132/140 (94.29%), Query Frame = 0


Query: 4   GIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFM 63
           G GGG+GPTAAAAAAA QKQK LLQRVETDI ++VDNFT +VNVSRV+DPPV+NSQE++M
Sbjct: 10  GSGGGSGPTAAAAAAALQKQKALLQRVETDITSVVDNFTQIVNVSRVSDPPVKNSQETYM 69

Query: 64  MEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRIVEFNQQAQQTDRLLSRIG 123
           MEMRA+RMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRI EF+Q+A++T+RLL+RI 
Sbjct: 70  MEMRASRMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRIEEFDQEAEKTNRLLARIA 129

Query: 124 EEAAANLKELESHYYSSTQR 144
           ++A+ANLKELESHYYSS QR
Sbjct: 130 DDASANLKELESHYYSSAQR 149

[Close]

BLAST of CsaV3_1G046300 vs. ExPASy Swiss-Prot
Match: Q9SA42 (Mediator of RNA polymerase II transcription subunit 22a OS=Arabidopsis thaliana OX=3702 GN=MED22A PE=1 SV=1)

HSP 1 Score: 213.8 bits (543), Expect = 1.4e-54
Identity = 111/146 (76.03%), Postives = 135/146 (92.47%), Query Frame = 0


Query: 1   MNK--GIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNS 60
           MNK  G GGG+GPTAAAAAAA QKQK LLQRV+TDI ++VDNF  +VNV+RV+DPP++NS
Sbjct: 2   MNKGGGSGGGSGPTAAAAAAALQKQKALLQRVDTDITSVVDNFNQIVNVARVSDPPMKNS 61

Query: 61  QESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRIVEFNQQAQQTDRL 120
           QE++MMEMRA+R+VQAADSLLKLVSELKQTAIFSGFASLNDHVEQRI EF+Q+A++T+RL
Sbjct: 62  QEAYMMEMRASRLVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRIAEFDQEAEKTNRL 121

Query: 121 LSRIGEEAAANLKELESHYYSSTQRT 145
           L+RI ++A+A+LKELESHYYSS QR+
Sbjct: 122 LARIADDASASLKELESHYYSSAQRS 147

[Close]

BLAST of CsaV3_1G046300 vs. ExPASy Swiss-Prot
Match: Q62276 (Mediator of RNA polymerase II transcription subunit 22 OS=Mus musculus OX=10090 GN=Med22 PE=1 SV=2)

HSP 1 Score: 82.4 bits (202), Expect = 4.8e-15
Identity = 49/137 (35.77%), Postives = 83/137 (60.58%), Query Frame = 0


Query: 14  AAAAAAAQKQKLLLQ----RVETDIANIVDNFTHLVNVSRVNDP-----PVRNSQESFMM 73
           A   A  Q ++ LLQ    R++ DI +I+DNFT ++  +++ D        +  Q+++ M
Sbjct: 2   AQQRALPQSKETLLQSYNKRLKDDIKSIMDNFTEIIKTAKIEDETQVSRATQGEQDNYEM 61

Query: 74  EMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRIVEFNQQAQQTDRLLSRIGE 133
            +RAA +V+A +SL+KLVS+LKQ  I + F S+N+ ++QR  +     ++ DR L  + +
Sbjct: 62  HVRAANIVRAGESLMKLVSDLKQFLILNDFPSVNEAIDQRNQQLRALQEECDRKLITLRD 121

Query: 134 EAAANLKELESHYYSST 142
           E + +L ELE  YYSS+
Sbjct: 122 EVSIDLYELEEEYYSSS 138

[Close]

BLAST of CsaV3_1G046300 vs. ExPASy Swiss-Prot
Match: A0JPN6 (Mediator of RNA polymerase II transcription subunit 22 OS=Rattus norvegicus OX=10116 GN=Med22 PE=2 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 4.8e-15
Identity = 49/137 (35.77%), Postives = 83/137 (60.58%), Query Frame = 0


Query: 14  AAAAAAAQKQKLLLQ----RVETDIANIVDNFTHLVNVSRVNDP-----PVRNSQESFMM 73
           A   A  Q ++ LLQ    R++ DI +I+DNFT ++  +++ D        +  Q+++ M
Sbjct: 2   AQQRALPQSKETLLQSYNKRLKDDIKSIMDNFTEIIKTAKIEDETQVSRATQGEQDNYEM 61

Query: 74  EMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRIVEFNQQAQQTDRLLSRIGE 133
            +RAA +V+A +SL+KLVS+LKQ  I + F S+N+ ++QR  +     ++ DR L  + +
Sbjct: 62  HVRAANIVRAGESLMKLVSDLKQFLILNDFPSVNEAIDQRNQQLRALQEECDRKLITLRD 121

Query: 134 EAAANLKELESHYYSST 142
           E + +L ELE  YYSS+
Sbjct: 122 EVSIDLYELEEEYYSSS 138

[Close]

BLAST of CsaV3_1G046300 vs. ExPASy Swiss-Prot
Match: Q5E9K2 (Mediator of RNA polymerase II transcription subunit 22 OS=Bos taurus OX=9913 GN=MED22 PE=2 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 6.2e-15
Identity = 48/137 (35.04%), Postives = 83/137 (60.58%), Query Frame = 0


Query: 14  AAAAAAAQKQKLLLQ----RVETDIANIVDNFTHLVNVSRVNDP-----PVRNSQESFMM 73
           A   A  Q ++ LLQ    R++ D+ +I+DNFT ++  +++ D        +  Q+++ M
Sbjct: 2   AQQRALPQSKETLLQSYNKRLKDDVKSIMDNFTEIIKTAKIEDETQVSRATQGEQDNYEM 61

Query: 74  EMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRIVEFNQQAQQTDRLLSRIGE 133
            +RAA +V+A +SL+KLVS+LKQ  I + F S+N+ ++QR  +     ++ DR L  + +
Sbjct: 62  HVRAANIVRAGESLMKLVSDLKQFLILNDFPSVNEAIDQRNQQLRALQEECDRKLIALRD 121

Query: 134 EAAANLKELESHYYSST 142
           E + +L ELE  YYSS+
Sbjct: 122 EVSIDLYELEEEYYSSS 138

[Close]

BLAST of CsaV3_1G046300 vs. ExPASy TrEMBL
Match: A0A0A0M174 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G701970 PE=4 SV=1)

HSP 1 Score: 280.0 bits (715), Expect = 5.7e-72
Identity = 150/150 (100.00%), Postives = 150/150 (100.00%), Query Frame = 0


Query: 1   MNKGIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQE 60
           MNKGIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQE
Sbjct: 1   MNKGIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQE 60

Query: 61  SFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRIVEFNQQAQQTDRLLS 120
           SFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRIVEFNQQAQQTDRLLS
Sbjct: 61  SFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRIVEFNQQAQQTDRLLS 120

Query: 121 RIGEEAAANLKELESHYYSSTQRTDQNSLT 151
           RIGEEAAANLKELESHYYSSTQRTDQNSLT
Sbjct: 121 RIGEEAAANLKELESHYYSSTQRTDQNSLT 150

[Close]

BLAST of CsaV3_1G046300 vs. ExPASy TrEMBL
Match: A0A1S3C993 (mediator of RNA polymerase II transcription subunit 22b-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103498265 PE=4 SV=1)

HSP 1 Score: 277.3 bits (708), Expect = 3.7e-71
Identity = 148/150 (98.67%), Postives = 150/150 (100.00%), Query Frame = 0


Query: 1   MNKGIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQE 60
           MNKGIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQE
Sbjct: 1   MNKGIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQE 60

Query: 61  SFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRIVEFNQQAQQTDRLLS 120
           SFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRIVEFNQQAQQT+RLLS
Sbjct: 61  SFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRIVEFNQQAQQTERLLS 120

Query: 121 RIGEEAAANLKELESHYYSSTQRTDQNSLT 151
           RIGEEAAANLKELESHYYSSTQRTDQN+LT
Sbjct: 121 RIGEEAAANLKELESHYYSSTQRTDQNNLT 150

[Close]

BLAST of CsaV3_1G046300 vs. ExPASy TrEMBL
Match: A0A5A7TMC4 (Mediator of RNA polymerase II transcription subunit 22a-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold302G00280 PE=4 SV=1)

HSP 1 Score: 277.3 bits (708), Expect = 3.7e-71
Identity = 148/150 (98.67%), Postives = 150/150 (100.00%), Query Frame = 0


Query: 1   MNKGIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQE 60
           MNKGIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQE
Sbjct: 48  MNKGIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQE 107

Query: 61  SFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRIVEFNQQAQQTDRLLS 120
           SFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRIVEFNQQAQQT+RLLS
Sbjct: 108 SFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRIVEFNQQAQQTERLLS 167

Query: 121 RIGEEAAANLKELESHYYSSTQRTDQNSLT 151
           RIGEEAAANLKELESHYYSSTQRTDQN+LT
Sbjct: 168 RIGEEAAANLKELESHYYSSTQRTDQNNLT 197

[Close]

BLAST of CsaV3_1G046300 vs. ExPASy TrEMBL
Match: A0A1S3CAG5 (mediator of RNA polymerase II transcription subunit 22a-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103498265 PE=4 SV=1)

HSP 1 Score: 277.3 bits (708), Expect = 3.7e-71
Identity = 148/150 (98.67%), Postives = 150/150 (100.00%), Query Frame = 0


Query: 1   MNKGIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQE 60
           MNKGIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQE
Sbjct: 48  MNKGIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQE 107

Query: 61  SFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRIVEFNQQAQQTDRLLS 120
           SFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRIVEFNQQAQQT+RLLS
Sbjct: 108 SFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRIVEFNQQAQQTERLLS 167

Query: 121 RIGEEAAANLKELESHYYSSTQRTDQNSLT 151
           RIGEEAAANLKELESHYYSSTQRTDQN+LT
Sbjct: 168 RIGEEAAANLKELESHYYSSTQRTDQNNLT 197

[Close]

BLAST of CsaV3_1G046300 vs. ExPASy TrEMBL
Match: A0A6J1DR20 (mediator of RNA polymerase II transcription subunit 22b-like OS=Momordica charantia OX=3673 GN=LOC111022360 PE=4 SV=1)

HSP 1 Score: 267.3 bits (682), Expect = 3.9e-68
Identity = 142/150 (94.67%), Postives = 146/150 (97.33%), Query Frame = 0


Query: 1   MNKGIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQE 60
           MNKG+GGG GPTAAAAAAAAQKQK+LLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQE
Sbjct: 1   MNKGVGGGNGPTAAAAAAAAQKQKVLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQE 60

Query: 61  SFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRIVEFNQQAQQTDRLLS 120
           SFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRIVEFNQQA+QTDRLLS
Sbjct: 61  SFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRIVEFNQQAEQTDRLLS 120

Query: 121 RIGEEAAANLKELESHYYSSTQRTDQNSLT 151
           RIGEEAA +LKELESHYYSSTQRT QN LT
Sbjct: 121 RIGEEAATSLKELESHYYSSTQRTSQNILT 150

[Close]

BLAST of CsaV3_1G046300 vs. TAIR 10
Match: AT1G07950.1 (Surfeit locus protein 5 subunit 22 of Mediator complex )

HSP 1 Score: 219.5 bits (558), Expect = 1.8e-57
Identity = 114/140 (81.43%), Postives = 132/140 (94.29%), Query Frame = 0


Query: 4   GIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFM 63
           G GGG+GPTAAAAAAA QKQK LLQRVETDI ++VDNFT +VNVSRV+DPPV+NSQE++M
Sbjct: 10  GSGGGSGPTAAAAAAALQKQKALLQRVETDITSVVDNFTQIVNVSRVSDPPVKNSQETYM 69

Query: 64  MEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRIVEFNQQAQQTDRLLSRIG 123
           MEMRA+RMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRI EF+Q+A++T+RLL+RI 
Sbjct: 70  MEMRASRMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRIEEFDQEAEKTNRLLARIA 129

Query: 124 EEAAANLKELESHYYSSTQR 144
           ++A+ANLKELESHYYSS QR
Sbjct: 130 DDASANLKELESHYYSSAQR 149

[Close]

BLAST of CsaV3_1G046300 vs. TAIR 10
Match: AT1G16430.1 (Surfeit locus protein 5 subunit 22 of Mediator complex )

HSP 1 Score: 213.8 bits (543), Expect = 9.7e-56
Identity = 111/146 (76.03%), Postives = 135/146 (92.47%), Query Frame = 0


Query: 1   MNK--GIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNS 60
           MNK  G GGG+GPTAAAAAAA QKQK LLQRV+TDI ++VDNF  +VNV+RV+DPP++NS
Sbjct: 2   MNKGGGSGGGSGPTAAAAAAALQKQKALLQRVDTDITSVVDNFNQIVNVARVSDPPMKNS 61

Query: 61  QESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRIVEFNQQAQQTDRL 120
           QE++MMEMRA+R+VQAADSLLKLVSELKQTAIFSGFASLNDHVEQRI EF+Q+A++T+RL
Sbjct: 62  QEAYMMEMRASRLVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRIAEFDQEAEKTNRL 121

Query: 121 LSRIGEEAAANLKELESHYYSSTQRT 145
           L+RI ++A+A+LKELESHYYSS QR+
Sbjct: 122 LARIADDASASLKELESHYYSSAQRS 147

The following BLAST results are available for this feature:

BLAST of CsaV3_1G046300 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004145443.1	1.2e-71	100.00	mediator of RNA polymerase II transcription subunit 22b [Cucumis sativus] >KGN66...	[more]
XP_008459037.1	7.7e-71	98.67	PREDICTED: mediator of RNA polymerase II transcription subunit 22a-like isoform ...	[more]
XP_008459039.1	7.7e-71	98.67	PREDICTED: mediator of RNA polymerase II transcription subunit 22b-like isoform ...	[more]
XP_038891249.1	1.2e-68	96.67	mediator of RNA polymerase II transcription subunit 22b-like [Benincasa hispida]...	[more]
KAG7029838.1	1.6e-68	95.33	Mediator of RNA polymerase II transcription subunit 22b [Cucurbita argyrosperma ...	[more]

BLAST of CsaV3_1G046300 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8LCH5	2.5e-56	81.43	Mediator of RNA polymerase II transcription subunit 22b OS=Arabidopsis thaliana ...	[more]
Q9SA42	1.4e-54	76.03	Mediator of RNA polymerase II transcription subunit 22a OS=Arabidopsis thaliana ...	[more]
Q62276	4.8e-15	35.77	Mediator of RNA polymerase II transcription subunit 22 OS=Mus musculus OX=10090 ...	[more]
A0JPN6	4.8e-15	35.77	Mediator of RNA polymerase II transcription subunit 22 OS=Rattus norvegicus OX=1...	[more]
Q5E9K2	6.2e-15	35.04	Mediator of RNA polymerase II transcription subunit 22 OS=Bos taurus OX=9913 GN=...	[more]

BLAST of CsaV3_1G046300 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0M174	5.7e-72	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G701970 PE=4 SV=1	[more]
A0A1S3C993	3.7e-71	98.67	mediator of RNA polymerase II transcription subunit 22b-like isoform X2 OS=Cucum...	[more]
A0A5A7TMC4	3.7e-71	98.67	Mediator of RNA polymerase II transcription subunit 22a-like isoform X1 OS=Cucum...	[more]
A0A1S3CAG5	3.7e-71	98.67	mediator of RNA polymerase II transcription subunit 22a-like isoform X1 OS=Cucum...	[more]
A0A6J1DR20	3.9e-68	94.67	mediator of RNA polymerase II transcription subunit 22b-like OS=Momordica charan...	[more]

BLAST of CsaV3_1G046300 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G07950.1	1.8e-57	81.43	Surfeit locus protein 5 subunit 22 of Mediator complex	[more]
AT1G16430.1	9.7e-56	76.03	Surfeit locus protein 5 subunit 22 of Mediator complex	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009332	Mediator of RNA polymerase II transcription subunit 22	PFAM	PF06179	Med22	coord: 28..127 e-value: 1.8E-28 score: 98.8
IPR009332	Mediator of RNA polymerase II transcription subunit 22	PANTHER	PTHR12434	MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 22	coord: 1..146

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_1G046300.1	CsaV3_1G046300.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006357	regulation of transcription by RNA polymerase II
cellular_component	GO:0016592	mediator complex
molecular_function	GO:0003712	transcription coregulator activity