CsaV3_1G043350 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_1G043350
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr1: 28311488 .. 28311787 (+)
RNA-Seq Expression	CsaV3_1G043350
Synteny	CsaV3_1G043350

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CCGTGCCCCAACCACGTTCAGACGAAGCCACACCCCAAGCTGAAGAGTCTTTCTTCGTCTGAGCCTCGCTCAATGCCGCTCGCAAGCCCCTTAGTATCACGTCGCATGTCTTCCATCGAAGCTGAGCCACTTCTAAGTCCTCTATTTCGTTCGAGTCGAGTTAAGTTGAAGCTTCCGTTCTCGAGCCAACTAGCCGAATTTGCTCTATTCAAGCCTACGATCCAAGCCAATTCTTCTTCTCTCCTAGCCAAACAAGCAAGCGCTCCCTCTCCTCTAGCCGAGATATTAAGCTACTTTTAA

mRNA sequence

CCGTGCCCCAACCACGTTCAGACGAAGCCACACCCCAAGCTGAAGAGTCTTTCTTCGTCTGAGCCTCGCTCAATGCCGCTCGCAAGCCCCTTAGTATCACGTCGCATGTCTTCCATCGAAGCTGAGCCACTTCTAAGTCCTCTATTTCGTTCGAGTCGAGTTAAGTTGAAGCTTCCGTTCTCGAGCCAACTAGCCGAATTTGCTCTATTCAAGCCTACGATCCAAGCCAATTCTTCTTCTCTCCTAGCCAAACAAGCAAGCGCTCCCTCTCCTCTAGCCGAGATATTAAGCTACTTTTAA

Coding sequence (CDS)

CCGTGCCCCAACCACGTTCAGACGAAGCCACACCCCAAGCTGAAGAGTCTTTCTTCGTCTGAGCCTCGCTCAATGCCGCTCGCAAGCCCCTTAGTATCACGTCGCATGTCTTCCATCGAAGCTGAGCCACTTCTAAGTCCTCTATTTCGTTCGAGTCGAGTTAAGTTGAAGCTTCCGTTCTCGAGCCAACTAGCCGAATTTGCTCTATTCAAGCCTACGATCCAAGCCAATTCTTCTTCTCTCCTAGCCAAACAAGCAAGCGCTCCCTCTCCTCTAGCCGAGATATTAAGCTACTTTTAA

Protein sequence

PCPNHVQTKPHPKLKSLSSSEPRSMPLASPLVSRRMSSIEAEPLLSPLFRSSRVKLKLPFSSQLAEFALFKPTIQANSSSLLAKQASAPSPLAEILSYF*

Homology

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BLAST of CsaV3_1G043350 vs. NCBI nr
Match: KAE8653528.1 (hypothetical protein Csa_007446, partial [Cucumis sativus])

HSP 1 Score: 184.9 bits (468), Expect = 3.4e-43
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 0


Query: 1   PCPNHVQTKPHPKLKSLSSSEPRSMPLASPLVSRRMSSIEAEPLLSPLFRSSRVKLKLPF 60
           PCPNHVQTKPHPKLKSLSSSEPRSMPLASPLVSRRMSSIEAEPLLSPLFRSSRVKLKLPF
Sbjct: 1   PCPNHVQTKPHPKLKSLSSSEPRSMPLASPLVSRRMSSIEAEPLLSPLFRSSRVKLKLPF 60

Query: 61  SSQLAEFALFKPTIQANSSSLLAKQASAPSPLAEILSYF 100
           SSQLAEFALFKPTIQANSSSLLAKQASAPSPLAEILSYF
Sbjct: 61  SSQLAEFALFKPTIQANSSSLLAKQASAPSPLAEILSYF 99

The following BLAST results are available for this feature:

BLAST of CsaV3_1G043350 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8653528.1	3.4e-43	100.00	hypothetical protein Csa_007446, partial [Cucumis sativus]	[more]

BLAST of CsaV3_1G043350 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_1G043350 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_1G043350 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 11..26
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..29

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_1G043350.1	CsaV3_1G043350.1	mRNA