CsaV3_1G042750 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_1G042750
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr1: 27641745 .. 27641949 (-)
RNA-Seq Expression	CsaV3_1G042750
Synteny	CsaV3_1G042750

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAACAGCTCCCCTCTCCAAACTCTCTCACCTCAACTTCCTCTCTATCGTTCTTCAACCGCCCACCGAAATCCGACCTCCGTTGCGCCGCTCGACTCACCGGACGACGATCACCACGCTGCACCGCAACTCTTCAGGCCGATTTCAAGGGTCAACCGGCCTTGATCGGCGTCGCTCTCTCCGACTTCCTCCACGGATTTCGTC

mRNA sequence

ATGCAACAGCTCCCCTCTCCAAACTCTCTCACCTCAACTTCCTCTCTATCGTTCTTCAACCGCCCACCGAAATCCGACCTCCGTTGCGCCGCTCGACTCACCGGACGACGATCACCACGCTGCACCGCAACTCTTCAGGCCGATTTCAAGGGTCAACCGGCCTTGATCGGCGTCGCTCTCTCCGACTTCCTCCACGGATTTCGTC

Coding sequence (CDS)

ATGCAACAGCTCCCCTCTCCAAACTCTCTCACCTCAACTTCCTCTCTATCGTTCTTCAACCGCCCACCGAAATCCGACCTCCGTTGCGCCGCTCGACTCACCGGACGACGATCACCACGCTGCACCGCAACTCTTCAGGCCGATTTCAAGGGTCAACCGGCCTTGATCGGCGTCGCTCTCTCCGACTTCCTCCACGGATTTCGTC

Protein sequence

MQQLPSPNSLTSTSSLSFFNRPPKSDLRCAARLTGRRSPRCTATLQADFKGQPALIGVALSDFLHGFRX

Homology

[Close]

BLAST of CsaV3_1G042750 vs. NCBI nr
Match: KAE8653509.1 (hypothetical protein Csa_007145, partial [Cucumis sativus])

HSP 1 Score: 137.9 bits (346), Expect = 3.3e-29
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 0


Query: 1  MQQLPSPNSLTSTSSLSFFNRPPKSDLRCAARLTGRRSPRCTATLQADFKGQPALIGVAL 60
          MQQLPSPNSLTSTSSLSFFNRPPKSDLRCAARLTGRRSPRCTATLQADFKGQPALIGVAL
Sbjct: 1  MQQLPSPNSLTSTSSLSFFNRPPKSDLRCAARLTGRRSPRCTATLQADFKGQPALIGVAL 60

Query: 61 SDFLHGFR 69
          SDFLHGFR
Sbjct: 61 SDFLHGFR 68

[Close]

BLAST of CsaV3_1G042750 vs. NCBI nr
Match: KAE8651908.1 (hypothetical protein Csa_023612, partial [Cucumis sativus])

HSP 1 Score: 99.4 bits (246), Expect = 1.3e-17
Identity = 52/67 (77.61%), Postives = 53/67 (79.10%), Query Frame = 0


Query: 2   QQLPSPNSLTSTSSLSFFNRPPKSDLRCAARLTGRRSPRCTATLQADFKGQPALIGVALS 61
           Q LP+ N    T      N PPKSDLRCAARLTGRRSPRCTATLQAD KGQPALIGVALS
Sbjct: 85  QCLPTTNKSQPT------NHPPKSDLRCAARLTGRRSPRCTATLQADLKGQPALIGVALS 144

Query: 62  DFLHGFR 69
           DFLHGFR
Sbjct: 145 DFLHGFR 145

[Close]

BLAST of CsaV3_1G042750 vs. ExPASy TrEMBL
Match: A0A0A0M2R9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G613530 PE=4 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 8.0e-29
Identity = 67/68 (98.53%), Postives = 67/68 (98.53%), Query Frame = 0


Query: 1  MQQLPSPNSLTSTSSLSFFNRPPKSDLRCAARLTGRRSPRCTATLQADFKGQPALIGVAL 60
          MQQLPSPNSLTSTSSLSFFNRPPKSDLRCAARLTGRRSPRCTATLQAD KGQPALIGVAL
Sbjct: 1  MQQLPSPNSLTSTSSLSFFNRPPKSDLRCAARLTGRRSPRCTATLQADLKGQPALIGVAL 60

Query: 61 SDFLHGFR 69
          SDFLHGFR
Sbjct: 61 SDFLHGFR 68

The following BLAST results are available for this feature:

BLAST of CsaV3_1G042750 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8653509.1	3.3e-29	100.00	hypothetical protein Csa_007145, partial [Cucumis sativus]	[more]
KAE8651908.1	1.3e-17	77.61	hypothetical protein Csa_023612, partial [Cucumis sativus]	[more]

BLAST of CsaV3_1G042750 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_1G042750 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0M2R9	8.0e-29	98.53	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G613530 PE=4 SV=1	[more]

BLAST of CsaV3_1G042750 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..23
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..21

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_1G042750.1	CsaV3_1G042750.1	mRNA