CsaV3_1G039450 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_1G039450
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Defensin-like (DEFL) family protein
Location	chr1: 24859757 .. 24860128 (+)
RNA-Seq Expression	CsaV3_1G039450
Synteny	CsaV3_1G039450

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAAAGTTAGGAGCAATCTTCAGTTGGGTCTTTGTTGCCTTCCTTGTTCTATATGCAGGTTTAACTTAATTCTCTCTTCTCAATGTATTAACCTTCAAATTACTGTTTTTTTTGGTTCAAAGGTAAACTTAATCATCTTTATATCATCGTGTCTAACAACGATAGAGTACGTGTACAATTGGAATTGCAGGGAGTATGAATACAAATGCACAGTTGTGCTGCAACAATCATCGTGAGTTGGGATCATGCGTGCCAGGAGTAGACGATGATTATGATGGGAAGTGTTGGCATCATTGCATTGTTGGTTGTGAGAGAGGTGGATTTTGTAAAAAACTTTGGTATGGACATGTCTGTCATTGTTACTGCTGA

mRNA sequence

ATGGCAAAGTTAGGAGCAATCTTCAGTTGGGTCTTTGTTGCCTTCCTTGTTCTATATGCAGGGAGTATGAATACAAATGCACAGTTGTGCTGCAACAATCATCGTGAGTTGGGATCATGCGTGCCAGGAGTAGACGATGATTATGATGGGAAGTGTTGGCATCATTGCATTGTTGGTTGTGAGAGAGGTGGATTTTGTAAAAAACTTTGGTATGGACATGTCTGTCATTGTTACTGCTGA

Coding sequence (CDS)

ATGGCAAAGTTAGGAGCAATCTTCAGTTGGGTCTTTGTTGCCTTCCTTGTTCTATATGCAGGGAGTATGAATACAAATGCACAGTTGTGCTGCAACAATCATCGTGAGTTGGGATCATGCGTGCCAGGAGTAGACGATGATTATGATGGGAAGTGTTGGCATCATTGCATTGTTGGTTGTGAGAGAGGTGGATTTTGTAAAAAACTTTGGTATGGACATGTCTGTCATTGTTACTGCTGA

Protein sequence

MAKLGAIFSWVFVAFLVLYAGSMNTNAQLCCNNHRELGSCVPGVDDDYDGKCWHHCIVGCERGGFCKKLWYGHVCHCYC*

Homology

[Close]

BLAST of CsaV3_1G039450 vs. NCBI nr
Match: KGN66133.1 (hypothetical protein Csa_007601 [Cucumis sativus])

HSP 1 Score: 186.4 bits (472), Expect = 9.5e-44
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 0


Query: 1  MAKLGAIFSWVFVAFLVLYAGSMNTNAQLCCNNHRELGSCVPGVDDDYDGKCWHHCIVGC 60
          MAKLGAIFSWVFVAFLVLYAGSMNTNAQLCCNNHRELGSCVPGVDDDYDGKCWHHCIVGC
Sbjct: 1  MAKLGAIFSWVFVAFLVLYAGSMNTNAQLCCNNHRELGSCVPGVDDDYDGKCWHHCIVGC 60

Query: 61 ERGGFCKKLWYGHVCHCYC 80
          ERGGFCKKLWYGHVCHCYC
Sbjct: 61 ERGGFCKKLWYGHVCHCYC 79

[Close]

BLAST of CsaV3_1G039450 vs. NCBI nr
Match: TYK10190.1 (putative defensin-like protein 20 [Cucumis melo var. makuwa])

HSP 1 Score: 146.4 bits (368), Expect = 1.1e-31
Identity = 63/79 (79.75%), Postives = 68/79 (86.08%), Query Frame = 0


Query: 1  MAKLGAIFSWVFVAFLVLYAGSMNTNAQLCCNNHRELGSCVPGVDDDYDGKCWHHCIVGC 60
          MAKLGAIF WVF+AFLVLY+GS NTNAQLCCNNH ELGSC PGVDD  DGKCW HCI GC
Sbjct: 1  MAKLGAIFGWVFIAFLVLYSGSKNTNAQLCCNNHPELGSCEPGVDDASDGKCWLHCIAGC 60

Query: 61 ERGGFCKKLWYGHVCHCYC 80
          E+GGFCK+L   +VCHCYC
Sbjct: 61 EKGGFCKQLTDKNVCHCYC 79

[Close]

BLAST of CsaV3_1G039450 vs. NCBI nr
Match: KGN66136.1 (hypothetical protein Csa_007074 [Cucumis sativus])

HSP 1 Score: 136.0 bits (341), Expect = 1.5e-28
Identity = 60/79 (75.95%), Postives = 64/79 (81.01%), Query Frame = 0


Query: 1  MAKLGAIFSWVFVAFLVLYAGSMNTNAQLCCNNHRELGSCVPGVDDDYDGKCWHHCIVGC 60
          MAKLGA F  VF+AFLVLY+GSMNTNAQLCCNNH ELG C  GVDD  DGKCW HCI GC
Sbjct: 1  MAKLGATFGLVFIAFLVLYSGSMNTNAQLCCNNHPELGECEAGVDDANDGKCWLHCIAGC 60

Query: 61 ERGGFCKKLWYGHVCHCYC 80
          E+GGFCK L   +VCHCYC
Sbjct: 61 EKGGFCKHLSDKNVCHCYC 79

[Close]

BLAST of CsaV3_1G039450 vs. NCBI nr
Match: TYK10191.1 (putative defensin-like protein 20 [Cucumis melo var. makuwa])

HSP 1 Score: 110.2 bits (274), Expect = 8.6e-21
Identity = 45/58 (77.59%), Postives = 48/58 (82.76%), Query Frame = 0


Query: 22  SMNTNAQLCCNNHRELGSCVPGVDDDYDGKCWHHCIVGCERGGFCKKLWYGHVCHCYC 80
           S NTNAQLCCNNH ELGSC PGVDD  DGKCW HCI GCE+GGFCK+L   +VCHCYC
Sbjct: 74  SKNTNAQLCCNNHPELGSCEPGVDDASDGKCWLHCIAGCEKGGFCKQLSNKNVCHCYC 131

[Close]

BLAST of CsaV3_1G039450 vs. NCBI nr
Match: TYK10192.1 (putative defensin-like protein 20 [Cucumis melo var. makuwa])

HSP 1 Score: 102.1 bits (253), Expect = 2.3e-18
Identity = 40/58 (68.97%), Postives = 46/58 (79.31%), Query Frame = 0


Query: 22 SMNTNAQLCCNNHRELGSCVPGVDDDYDGKCWHHCIVGCERGGFCKKLWYGHVCHCYC 80
          S+NTNAQLCC NH E G+C PGVDD  DG+CW  CI GCE+GGFCK++   HVCHCYC
Sbjct: 38 SLNTNAQLCCINHPEWGACWPGVDDATDGRCWRRCIGGCEKGGFCKRVGRKHVCHCYC 95

[Close]

BLAST of CsaV3_1G039450 vs. ExPASy Swiss-Prot
Match: Q2V2S1 (Putative defensin-like protein 20 OS=Arabidopsis thaliana OX=3702 GN=At5g52605 PE=3 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 1.3e-14
Identity = 30/53 (56.60%), Postives = 36/53 (67.92%), Query Frame = 0


Query: 29 LCCNNHRELGSCVPGVDDD--YDGKCWHHCIVGCERGGFCKKLWYGHVCHCYC 80
          +CC  H  +G C+PG+DDD   DGKCW  CI GCE GGFCK   + H+CHC C
Sbjct: 36 ICCKEHPSVGRCLPGIDDDAEKDGKCWKFCIEGCETGGFCKLFEHKHICHCNC 88

[Close]

BLAST of CsaV3_1G039450 vs. ExPASy Swiss-Prot
Match: P0CAX9 (Defensin-like protein 21 OS=Arabidopsis thaliana OX=3702 GN=At4g14276 PE=2 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 6.2e-14
Identity = 35/87 (40.23%), Postives = 47/87 (54.02%), Query Frame = 0


Query: 7  IFSWVFVAFLVLYAGSMNTNAQ------------LCCNNHRELGSCVPGVDDDYD--GKC 66
          + S+V  A +VL  GS+  + Q            +CC  H  +G C+P +DD  +  GKC
Sbjct: 6  VVSFVLFAAIVLCIGSIQIDGQKHTAPWIPEDNSICCKEHPSVGRCLPNIDDSAEKGGKC 65

Query: 67 WHHCIVGCERGGFCKKLWYGHVCHCYC 80
          W  CI GCE GGFCK   + H+CHC C
Sbjct: 66 WKFCIEGCETGGFCKLFGHKHICHCNC 92

[Close]

BLAST of CsaV3_1G039450 vs. ExPASy Swiss-Prot
Match: Q2V391 (Defensin-like protein 22 OS=Arabidopsis thaliana OX=3702 GN=At5g08315 PE=2 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 5.1e-08
Identity = 24/60 (40.00%), Postives = 34/60 (56.67%), Query Frame = 0


Query: 22 SMNTNAQLCCNNHRELGSCVPGVDDDYDGKCWHHCIVGCE--RGGFCKKLWYGHVCHCYC 80
          ++     LCCNNH + G C    DD    +C   C+ GC+  +GG+CK + +G  CHCYC
Sbjct: 26 NVENGGSLCCNNHPKFGKCNTKNDDQ---RCNSWCLNGCDNGKGGYCKSMSHGGQCHCYC 82

[Close]

BLAST of CsaV3_1G039450 vs. ExPASy Swiss-Prot
Match: Q2L6T3 (Putative defensin-like protein 27 OS=Arabidopsis thaliana OX=3702 GN=At4g18823 PE=3 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 5.6e-07
Identity = 31/80 (38.75%), Postives = 37/80 (46.25%), Query Frame = 0


Query: 10 WVFVAFLVLYA----------GSMNTNAQLCCNNHRELGSCVPGVDDDYDGKCWHHCIVG 69
          +VF AFL L             S N    LCCN+H E G C        +  C   C+ G
Sbjct: 6  FVFFAFLALSVLLAVMNEDSILSSNKGDSLCCNDHPEFGICT-------NKSCNKWCLQG 65

Query: 70 CERGGFCKKLWYGHVCHCYC 80
          C RGGFCK+     +CHCYC
Sbjct: 66 CTRGGFCKR----KICHCYC 74

[Close]

BLAST of CsaV3_1G039450 vs. ExPASy TrEMBL
Match: A0A0A0LWJ9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G573030 PE=3 SV=1)

HSP 1 Score: 186.4 bits (472), Expect = 4.6e-44
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 0


Query: 1  MAKLGAIFSWVFVAFLVLYAGSMNTNAQLCCNNHRELGSCVPGVDDDYDGKCWHHCIVGC 60
          MAKLGAIFSWVFVAFLVLYAGSMNTNAQLCCNNHRELGSCVPGVDDDYDGKCWHHCIVGC
Sbjct: 1  MAKLGAIFSWVFVAFLVLYAGSMNTNAQLCCNNHRELGSCVPGVDDDYDGKCWHHCIVGC 60

Query: 61 ERGGFCKKLWYGHVCHCYC 80
          ERGGFCKKLWYGHVCHCYC
Sbjct: 61 ERGGFCKKLWYGHVCHCYC 79

[Close]

BLAST of CsaV3_1G039450 vs. ExPASy TrEMBL
Match: A0A5D3CFQ3 (Putative defensin-like protein 20 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold16G003350 PE=3 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 5.3e-32
Identity = 63/79 (79.75%), Postives = 68/79 (86.08%), Query Frame = 0


Query: 1  MAKLGAIFSWVFVAFLVLYAGSMNTNAQLCCNNHRELGSCVPGVDDDYDGKCWHHCIVGC 60
          MAKLGAIF WVF+AFLVLY+GS NTNAQLCCNNH ELGSC PGVDD  DGKCW HCI GC
Sbjct: 1  MAKLGAIFGWVFIAFLVLYSGSKNTNAQLCCNNHPELGSCEPGVDDASDGKCWLHCIAGC 60

Query: 61 ERGGFCKKLWYGHVCHCYC 80
          E+GGFCK+L   +VCHCYC
Sbjct: 61 EKGGFCKQLTDKNVCHCYC 79

[Close]

BLAST of CsaV3_1G039450 vs. ExPASy TrEMBL
Match: A0A0A0M1N0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G573060 PE=3 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 7.1e-29
Identity = 60/79 (75.95%), Postives = 64/79 (81.01%), Query Frame = 0


Query: 1  MAKLGAIFSWVFVAFLVLYAGSMNTNAQLCCNNHRELGSCVPGVDDDYDGKCWHHCIVGC 60
          MAKLGA F  VF+AFLVLY+GSMNTNAQLCCNNH ELG C  GVDD  DGKCW HCI GC
Sbjct: 1  MAKLGATFGLVFIAFLVLYSGSMNTNAQLCCNNHPELGECEAGVDDANDGKCWLHCIAGC 60

Query: 61 ERGGFCKKLWYGHVCHCYC 80
          E+GGFCK L   +VCHCYC
Sbjct: 61 EKGGFCKHLSDKNVCHCYC 79

[Close]

BLAST of CsaV3_1G039450 vs. ExPASy TrEMBL
Match: A0A0A0LYL5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G573040 PE=3 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 2.0e-23
Identity = 50/79 (63.29%), Postives = 59/79 (74.68%), Query Frame = 0


Query: 1  MAKLGAIFSWVFVAFLVLYAGSMNTNAQLCCNNHRELGSCVPGVDDDYDGKCWHHCIVGC 60
          MAK+G I   VF+ FL  Y+GS+NTNAQLCC NH E G+C PGVDD  DG+CW  CI GC
Sbjct: 1  MAKVGVISWVVFIVFLAFYSGSLNTNAQLCCINHPEWGACKPGVDDATDGRCWLKCIGGC 60

Query: 61 ERGGFCKKLWYGHVCHCYC 80
          E+GG CK++   HVCHCYC
Sbjct: 61 EKGGICKRVGKKHVCHCYC 79

[Close]

BLAST of CsaV3_1G039450 vs. ExPASy TrEMBL
Match: A0A5D3CEJ1 (Putative defensin-like protein 20 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold16G003360 PE=3 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 4.2e-21
Identity = 45/58 (77.59%), Postives = 48/58 (82.76%), Query Frame = 0


Query: 22  SMNTNAQLCCNNHRELGSCVPGVDDDYDGKCWHHCIVGCERGGFCKKLWYGHVCHCYC 80
           S NTNAQLCCNNH ELGSC PGVDD  DGKCW HCI GCE+GGFCK+L   +VCHCYC
Sbjct: 74  SKNTNAQLCCNNHPELGSCEPGVDDASDGKCWLHCIAGCEKGGFCKQLSNKNVCHCYC 131

[Close]

BLAST of CsaV3_1G039450 vs. TAIR 10
Match: AT5G52605.1 (Defensin-like (DEFL) family protein )

HSP 1 Score: 80.1 bits (196), Expect = 8.9e-16
Identity = 30/53 (56.60%), Postives = 36/53 (67.92%), Query Frame = 0


Query: 29 LCCNNHRELGSCVPGVDDD--YDGKCWHHCIVGCERGGFCKKLWYGHVCHCYC 80
          +CC  H  +G C+PG+DDD   DGKCW  CI GCE GGFCK   + H+CHC C
Sbjct: 36 ICCKEHPSVGRCLPGIDDDAEKDGKCWKFCIEGCETGGFCKLFEHKHICHCNC 88

[Close]

BLAST of CsaV3_1G039450 vs. TAIR 10
Match: AT4G14276.1 (Defensin-like (DEFL) family protein )

HSP 1 Score: 77.8 bits (190), Expect = 4.4e-15
Identity = 35/87 (40.23%), Postives = 47/87 (54.02%), Query Frame = 0


Query: 7  IFSWVFVAFLVLYAGSMNTNAQ------------LCCNNHRELGSCVPGVDDDYD--GKC 66
          + S+V  A +VL  GS+  + Q            +CC  H  +G C+P +DD  +  GKC
Sbjct: 6  VVSFVLFAAIVLCIGSIQIDGQKHTAPWIPEDNSICCKEHPSVGRCLPNIDDSAEKGGKC 65

Query: 67 WHHCIVGCERGGFCKKLWYGHVCHCYC 80
          W  CI GCE GGFCK   + H+CHC C
Sbjct: 66 WKFCIEGCETGGFCKLFGHKHICHCNC 92

[Close]

BLAST of CsaV3_1G039450 vs. TAIR 10
Match: AT5G08315.1 (Defensin-like (DEFL) family protein )

HSP 1 Score: 58.2 bits (139), Expect = 3.6e-09
Identity = 24/60 (40.00%), Postives = 34/60 (56.67%), Query Frame = 0


Query: 22 SMNTNAQLCCNNHRELGSCVPGVDDDYDGKCWHHCIVGCE--RGGFCKKLWYGHVCHCYC 80
          ++     LCCNNH + G C    DD    +C   C+ GC+  +GG+CK + +G  CHCYC
Sbjct: 26 NVENGGSLCCNNHPKFGKCNTKNDDQ---RCNSWCLNGCDNGKGGYCKSMSHGGQCHCYC 82

[Close]

BLAST of CsaV3_1G039450 vs. TAIR 10
Match: AT4G18823.1 (Defensin-like (DEFL) family protein )

HSP 1 Score: 54.7 bits (130), Expect = 4.0e-08
Identity = 31/80 (38.75%), Postives = 37/80 (46.25%), Query Frame = 0


Query: 10 WVFVAFLVLYA----------GSMNTNAQLCCNNHRELGSCVPGVDDDYDGKCWHHCIVG 69
          +VF AFL L             S N    LCCN+H E G C        +  C   C+ G
Sbjct: 6  FVFFAFLALSVLLAVMNEDSILSSNKGDSLCCNDHPEFGICT-------NKSCNKWCLQG 65

Query: 70 CERGGFCKKLWYGHVCHCYC 80
          C RGGFCK+     +CHCYC
Sbjct: 66 CTRGGFCKR----KICHCYC 74

[Close]

BLAST of CsaV3_1G039450 vs. TAIR 10
Match: AT1G33607.1 (Defensin-like (DEFL) family protein )

HSP 1 Score: 43.5 bits (101), Expect = 9.2e-05
Identity = 24/77 (31.17%), Postives = 36/77 (46.75%), Query Frame = 0


Query: 7  IFSWVFVAFLVLYAGSMNTNAQ----LCCNNHRELGSCVPGVDDDYDGKCWHHCIVGCER 66
          +FS+  +  L      M  N +    LCCN+H + G C    D+    + W H   G  +
Sbjct: 6  VFSFALLIVLTFSVIGMIYNVESGGSLCCNSHPKFGKCNTNNDEQRCNR-WCHNGCGNGK 65

Query: 67 GGFCKKLWYGHVCHCYC 80
          GG+ K + +G  CH YC
Sbjct: 66 GGYYKSMSHGGQCHYYC 81

The following BLAST results are available for this feature:

BLAST of CsaV3_1G039450 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN66133.1	9.5e-44	100.00	hypothetical protein Csa_007601 [Cucumis sativus]	[more]
TYK10190.1	1.1e-31	79.75	putative defensin-like protein 20 [Cucumis melo var. makuwa]	[more]
KGN66136.1	1.5e-28	75.95	hypothetical protein Csa_007074 [Cucumis sativus]	[more]
TYK10191.1	8.6e-21	77.59	putative defensin-like protein 20 [Cucumis melo var. makuwa]	[more]
TYK10192.1	2.3e-18	68.97	putative defensin-like protein 20 [Cucumis melo var. makuwa]	[more]

BLAST of CsaV3_1G039450 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q2V2S1	1.3e-14	56.60	Putative defensin-like protein 20 OS=Arabidopsis thaliana OX=3702 GN=At5g52605 P...	[more]
P0CAX9	6.2e-14	40.23	Defensin-like protein 21 OS=Arabidopsis thaliana OX=3702 GN=At4g14276 PE=2 SV=1	[more]
Q2V391	5.1e-08	40.00	Defensin-like protein 22 OS=Arabidopsis thaliana OX=3702 GN=At5g08315 PE=2 SV=1	[more]
Q2L6T3	5.6e-07	38.75	Putative defensin-like protein 27 OS=Arabidopsis thaliana OX=3702 GN=At4g18823 P...	[more]

BLAST of CsaV3_1G039450 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LWJ9	4.6e-44	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G573030 PE=3 SV=1	[more]
A0A5D3CFQ3	5.3e-32	79.75	Putative defensin-like protein 20 OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A0A0M1N0	7.1e-29	75.95	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G573060 PE=3 SV=1	[more]
A0A0A0LYL5	2.0e-23	63.29	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G573040 PE=3 SV=1	[more]
A0A5D3CEJ1	4.2e-21	77.59	Putative defensin-like protein 20 OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]

BLAST of CsaV3_1G039450 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G52605.1	8.9e-16	56.60	Defensin-like (DEFL) family protein	[more]
AT4G14276.1	4.4e-15	40.23	Defensin-like (DEFL) family protein	[more]
AT5G08315.1	3.6e-09	40.00	Defensin-like (DEFL) family protein	[more]
AT4G18823.1	4.0e-08	38.75	Defensin-like (DEFL) family protein	[more]
AT1G33607.1	9.2e-05	31.17	Defensin-like (DEFL) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR022618	Defensin-like protein 20-27	PFAM	PF10868	Defensin_like	coord: 29..79 e-value: 2.9E-13 score: 50.3
IPR022618	Defensin-like protein 20-27	PANTHER	PTHR34453	DEFENSIN-LIKE (DEFL) FAMILY PROTEIN-RELATED	coord: 1..79

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_1G039450.1	CsaV3_1G039450.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0050832	defense response to fungus
cellular_component	GO:0005576	extracellular region