CsaV3_1G039370 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_1G039370
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Histone H2A
Location	chr1: 24820055 .. 24823041 (-)
RNA-Seq Expression	CsaV3_1G039370
Synteny	CsaV3_1G039370

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CCCGCGAATGTCAAAATACAAGGCCACGTTGGCGATCCGTGTGATGCAACCCTCAACCAATCACATCTCTCTCTCATCCTATATATACCAAAACCCTCACTCCTCACCTTCCAATCTCATTCTCAAACCTTCATCGCTCTCCAAAAACCCCAACTTAGGGTTCCTGATTTTCATCTTTTTCTCTCAAAGTCCCTCGAATTTTCCCGATTCGACGATGAGTTCCACTGGCGGTTCCACCAAAGGCGGTAGAGGAAAGCCCAAAGCTACCAAATCTGTTTCCCGATCGCACAAAGCCGGACTCCAGTTCCCCGTTGGTAGAATCGCAAGGTTTCTCAAGGCTGGTAAATACGCTGAACGTGTCGGCGCTGGTGCTCCGGTCTACTTATCTGCCGTCCTTGAATATCTCGCTGCTGAGGTAACAATCAATGTCCACACTGGTTTTGATTGAATTCTTTTTTGATCATGTTCGATGGATCTTTATTTTTTGTTTTTGTTGATTTCAATTGGGATTAGGTTTTGGAGCTTGCTGGTAATGCTGCTAGAGACAACAAGAAGAATCGTATTGTGCCGAGACATATTCAGCTTGCTGTGAGAAACGATGAGGAATTGAGTAAGCTTTTGGGATCTGTAACAATTGCTAATGGTGGTGTTTTACCTAATATTCACCAGACTCTTTTGCCTAAAAAGGTTGGTAAAGATAAGGGTGATATTGGTTCTGCATCACAAGAATTCTAGAGGTTTTAGGGTTTTTTTTTGGGTAAGGTTTGTTTCATTACTAGAGATGACAATGTTTTGATATGTGAAAATGGATGTGTGGTTTTGCATCTATGACATTCGCTTCCTCTTTTGTACTTTGTCATCTTGATTTTGTTTAGATGCATATATTTTATATCAATATGGGGTTGTTGGTGGATTTGATTCAAGAATGATGATGACCAACTCCTTTTTACAGTTAGAAGTTCAATGAAATGACTTTCTTGTTGAAAGATTTCAATTTTGATTGAAGTTCCACGAAGTTTGTACTTCGAAAGCTTTGTCTCATCTCTCTGATCTCTGTGTATTGAATTTTGTTTGGCAATTGTTATGATTCTAAATACTGTGAATCATGTCTTAGAATATGAATGGTAAATAATGTGTCAATATTGTTCATTATGAATGATAAGACAAAAGGCAATGAGGAATTTATAAGGAAAATATGTTTAATTTCTTCCTCGAGATTTTCCTATTGCCTAATTTCATGAAGTTAAAGGCTGTGCTTTTGTATGAAAGATCAAAACTAGCTTATATTGTTGCAATAGAGGGAAAAATAATACAAATATAGGTCTACCCTAATCAAAACCCTTTTTTTTTGGGTTTATGTTATATTTGTGTGAAATCAACAAATTGTGTTGATTGGGTTTTTTTCTTTTGCTTTCTTTTGATCTCTACTTTTTTGCTCACTTTTAGTCCTCTCTTCGCCGTCGCATTTTCTCAACCTTGCTCTTACTCTGTCTCCTTGGTTCTCTAGGAAGGAAAATTGAGGCTATAGTGTGTGTGTGTATGATAATAATATTAAATCTCAAAAGAAGCATGTAATAGAGGTAAAAAGGATTCTTCCCAAAAAGAAAAAGAAATGAATGGAAACTTTCAAAATCTATGATTTATTTTGTTAAGCCCAAAGAAGTATTGGGCCACTACCACAAGCATATGAGCCCATGATATAGAATATAAGTCATGTTCAAAGATACCACAAAAATAATGTTGTCAATACATTTATATTATATATATGCAAAGTGTATATATTAAAGTGATTTAGAAGCTGATTCATCGGTTGGGTCTTGACCAAACAAAGCTCTTTGACTGATCCATCGAACAGTTGGCTTGGCTAAATCATACTATCAACATCTTATTAAGAATATAAACGAGGTGAATTTTTAAAATATTTCAACTTATGAGTAAATGACAAAAACCAATAACGATAATTGTAATTGCACCTCAATTTTTAATTTCAAATAAAACTCTTAAACTAATACAATTGTTGCACTTTTTGAAACTATGTAAATCTGAGGTTTCAATTTTAATACTTCATAAGTTGGAGGACTCATTATAATTACTACATTACTTTAAAAGTGATTTTTTCCTTTTGGGTTTAAACTTTACTTTTATTAGATGAGAGGGAGAGAGCCAAAACTTGAGGAGAAAGGAGACAAAGAAGATAGTGAAAGGAGGATGGTGAGGTGTAAACCTTTGGTCCATACATAGCAAAAAAACACAAGGGGTGAGGGGAAAAAAAAGAAAAGAAAAAAGAAGAGTATGATTGATGATATTATTATTAGAATTCAAATTTCTTTTGTTTCTAATTTTATAGAAAAAAATAGAAAATAATATTGATGTAAAGAGAATAAAAGTGATAAAGATCCAAAAACTGTTCCTAGTTGTTGACCTAATTGCCAATGCTGCCAAAGCCATCCCAATGGGAGGGATTCCAATAATTATGGCAGCCCCCCCTCCCTCCCCTCAACACTACCCTTCACCATTCTTCTTATTTTCATCTTTGCCCTTTTGGATTTTTGTTCTAAACATTTCAACTCGAGTTGGGCATCCGAAACTGGATGTCTAGACATAACGCCTAAAACTTGAAATCTTGATATTCTTTGTAATTCAAACGCATCACAGTCTGGTAAAGTGGTGGTGAACTTTACTCAACGCGTAGTGGAAGATGTATTTAAATCTTGTCGCTTGAGTTTGAACACCTAAGATATGCAACCAAAATTCTGCAGAGCAAAAACTTGTCAGGAAAGGTTGAGTTGTGGATCATGCTATGTTTAAGATGTTTAACAGTTATGTTTGGAATGTAAACAGTTCTGATAATCCTACGGTGTCCCATAATAAAACAGAGAATAACTTAATCGGAGCTGCATTGAAACCGATTGGAATTCAAAACACTTTTTGATTTTACTTGGAAACAAACTAGAGAGAAAGAAAATGGAGAGAAGTTTTTGAGAAAT

mRNA sequence

ATGTCAAAATACAAGGCCACGTTGGCGATCCGTGTGATGCAACCCTCAACCAATCACATCTCTCTCTCATCCTATATATACCAAAACCCTCACTCCTCACCTTCCAATCTCATTCTCAAACCTTCATCGCTCTCCAAAAACCCCAACTTAGGGTTCCTGATTTTCATCTTTTTCTCTCAAAGTCCCTCGAATTTTCCCGATTCGACGATGAGTTCCACTGGCGGTTCCACCAAAGGCGGTAGAGGAAAGCCCAAAGCTACCAAATCTGTTTCCCGATCGCACAAAGCCGGACTCCAGTTCCCCGTTGGTAGAATCGCAAGGTTTCTCAAGGCTGGTAAATACGCTGAACGTGTCGGCGCTGGTGCTCCGGTCTACTTATCTGCCGTCCTTGAATATCTCGCTGCTGAGGTTTTGGAGCTTGCTGGTAATGCTGCTAGAGACAACAAGAAGAATCGTATTGTGCCGAGACATATTCAGCTTGCTGTGAGAAACGATGAGGAATTGAGTAAGCTTTTGGGATCTGTAACAATTGCTAATGGTGGTGTTTTACCTAATATTCACCAGACTCTTTTGCCTAAAAAGGTTGGTAAAGATAAGGGTGATATTGGTTCTGCATCACAAGAATTCTAG

Coding sequence (CDS)

ATGTCAAAATACAAGGCCACGTTGGCGATCCGTGTGATGCAACCCTCAACCAATCACATCTCTCTCTCATCCTATATATACCAAAACCCTCACTCCTCACCTTCCAATCTCATTCTCAAACCTTCATCGCTCTCCAAAAACCCCAACTTAGGGTTCCTGATTTTCATCTTTTTCTCTCAAAGTCCCTCGAATTTTCCCGATTCGACGATGAGTTCCACTGGCGGTTCCACCAAAGGCGGTAGAGGAAAGCCCAAAGCTACCAAATCTGTTTCCCGATCGCACAAAGCCGGACTCCAGTTCCCCGTTGGTAGAATCGCAAGGTTTCTCAAGGCTGGTAAATACGCTGAACGTGTCGGCGCTGGTGCTCCGGTCTACTTATCTGCCGTCCTTGAATATCTCGCTGCTGAGGTTTTGGAGCTTGCTGGTAATGCTGCTAGAGACAACAAGAAGAATCGTATTGTGCCGAGACATATTCAGCTTGCTGTGAGAAACGATGAGGAATTGAGTAAGCTTTTGGGATCTGTAACAATTGCTAATGGTGGTGTTTTACCTAATATTCACCAGACTCTTTTGCCTAAAAAGGTTGGTAAAGATAAGGGTGATATTGGTTCTGCATCACAAGAATTCTAG

Protein sequence

MSKYKATLAIRVMQPSTNHISLSSYIYQNPHSSPSNLILKPSSLSKNPNLGFLIFIFFSQSPSNFPDSTMSSTGGSTKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKVGKDKGDIGSASQEF*

Homology

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BLAST of CsaV3_1G039370 vs. NCBI nr
Match: KAE8653389.1 (hypothetical protein Csa_007458 [Cucumis sativus])

HSP 1 Score: 401.4 bits (1030), Expect = 4.9e-108
Identity = 209/209 (100.00%), Postives = 209/209 (100.00%), Query Frame = 0


Query: 1   MSKYKATLAIRVMQPSTNHISLSSYIYQNPHSSPSNLILKPSSLSKNPNLGFLIFIFFSQ 60
           MSKYKATLAIRVMQPSTNHISLSSYIYQNPHSSPSNLILKPSSLSKNPNLGFLIFIFFSQ
Sbjct: 1   MSKYKATLAIRVMQPSTNHISLSSYIYQNPHSSPSNLILKPSSLSKNPNLGFLIFIFFSQ 60

Query: 61  SPSNFPDSTMSSTGGSTKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGA 120
           SPSNFPDSTMSSTGGSTKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGA
Sbjct: 61  SPSNFPDSTMSSTGGSTKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGA 120

Query: 121 GAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANG 180
           GAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANG
Sbjct: 121 GAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANG 180

Query: 181 GVLPNIHQTLLPKKVGKDKGDIGSASQEF 210
           GVLPNIHQTLLPKKVGKDKGDIGSASQEF
Sbjct: 181 GVLPNIHQTLLPKKVGKDKGDIGSASQEF 209

[Close]

BLAST of CsaV3_1G039370 vs. NCBI nr
Match: XP_004135645.1 (histone H2AX [Cucumis sativus] >XP_008450716.1 PREDICTED: histone H2AX [Cucumis melo])

HSP 1 Score: 270.4 bits (690), Expect = 1.3e-68
Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 0


Query: 70  MSSTGGSTKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV 129
           MSSTGGSTKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV
Sbjct: 1   MSSTGGSTKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV 60

Query: 130 LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT 189
           LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT
Sbjct: 61  LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT 120

Query: 190 LLPKKVGKDKGDIGSASQEF 210
           LLPKKVGKDKGDIGSASQEF
Sbjct: 121 LLPKKVGKDKGDIGSASQEF 140

[Close]

BLAST of CsaV3_1G039370 vs. NCBI nr
Match: TYK10200.1 (histone H2AX [Cucumis melo var. makuwa])

HSP 1 Score: 270.4 bits (690), Expect = 1.3e-68
Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 0


Query: 70  MSSTGGSTKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV 129
           MSSTGGSTKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV
Sbjct: 1   MSSTGGSTKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV 60

Query: 130 LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT 189
           LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT
Sbjct: 61  LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT 120

Query: 190 LLPKKVGKDKGDIGSASQEF 210
           LLPKKVGKDKGDIGSASQEF
Sbjct: 121 LLPKKVGKDKGDIGSASQEF 140

[Close]

BLAST of CsaV3_1G039370 vs. NCBI nr
Match: XP_022154594.1 (probable histone H2AXb [Momordica charantia])

HSP 1 Score: 268.5 bits (685), Expect = 5.0e-68
Identity = 139/140 (99.29%), Postives = 139/140 (99.29%), Query Frame = 0


Query: 70  MSSTGGSTKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV 129
           MSS GGSTKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV
Sbjct: 1   MSSAGGSTKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV 60

Query: 130 LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT 189
           LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT
Sbjct: 61  LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT 120

Query: 190 LLPKKVGKDKGDIGSASQEF 210
           LLPKKVGKDKGDIGSASQEF
Sbjct: 121 LLPKKVGKDKGDIGSASQEF 140

[Close]

BLAST of CsaV3_1G039370 vs. NCBI nr
Match: XP_038878621.1 (histone H2AX [Benincasa hispida])

HSP 1 Score: 268.1 bits (684), Expect = 6.5e-68
Identity = 139/140 (99.29%), Postives = 139/140 (99.29%), Query Frame = 0


Query: 70  MSSTGGSTKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV 129
           MSSTG STKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV
Sbjct: 1   MSSTGSSTKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV 60

Query: 130 LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT 189
           LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT
Sbjct: 61  LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT 120

Query: 190 LLPKKVGKDKGDIGSASQEF 210
           LLPKKVGKDKGDIGSASQEF
Sbjct: 121 LLPKKVGKDKGDIGSASQEF 140

[Close]

BLAST of CsaV3_1G039370 vs. ExPASy Swiss-Prot
Match: Q9S9K7 (Probable histone H2AXb OS=Arabidopsis thaliana OX=3702 GN=At1g54690 PE=1 SV=1)

HSP 1 Score: 250.8 bits (639), Expect = 1.4e-65
Identity = 134/142 (94.37%), Postives = 135/142 (95.07%), Query Frame = 0


Query: 70  MSSTGGS--TKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLS 129
           MSS  GS  TKGGRGKPKATKSVSRS KAGLQFPVGRIARFLKAGKYAERVGAGAPVYLS
Sbjct: 1   MSSGAGSGTTKGGRGKPKATKSVSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLS 60

Query: 130 AVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIH 189
           AVLEYLAAEVLELAGNAARDNKK RIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIH
Sbjct: 61  AVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIH 120

Query: 190 QTLLPKKVGKDKGDIGSASQEF 210
           QTLLP KVGK+KGDIGSASQEF
Sbjct: 121 QTLLPSKVGKNKGDIGSASQEF 142

[Close]

BLAST of CsaV3_1G039370 vs. ExPASy Swiss-Prot
Match: O04848 (Probable histone H2AXa OS=Arabidopsis thaliana OX=3702 GN=At1g08880 PE=1 SV=1)

HSP 1 Score: 249.6 bits (636), Expect = 3.1e-65
Identity = 132/141 (93.62%), Postives = 135/141 (95.74%), Query Frame = 0


Query: 72  STG---GSTKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSA 131
           STG   G+TKGGRGKPKATKSVSRS KAGLQFPVGRIARFLK+GKYAERVGAGAPVYLSA
Sbjct: 2   STGAGSGTTKGGRGKPKATKSVSRSSKAGLQFPVGRIARFLKSGKYAERVGAGAPVYLSA 61

Query: 132 VLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQ 191
           VLEYLAAEVLELAGNAARDNKK RIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQ
Sbjct: 62  VLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQ 121

Query: 192 TLLPKKVGKDKGDIGSASQEF 210
           TLLP KVGK+KGDIGSASQEF
Sbjct: 122 TLLPSKVGKNKGDIGSASQEF 142

[Close]

BLAST of CsaV3_1G039370 vs. ExPASy Swiss-Prot
Match: O65759 (Histone H2AX OS=Cicer arietinum OX=3827 GN=HIS2A PE=2 SV=1)

HSP 1 Score: 249.2 bits (635), Expect = 4.1e-65
Identity = 132/140 (94.29%), Postives = 135/140 (96.43%), Query Frame = 0


Query: 70  MSSTGGSTKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV 129
           MSST  +TKGGRGKPKA+KSVSRS KAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV
Sbjct: 1   MSST-ATTKGGRGKPKASKSVSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV 60

Query: 130 LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT 189
           LEYLAAEVLELAGNAARDNK NRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT
Sbjct: 61  LEYLAAEVLELAGNAARDNKNNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT 120

Query: 190 LLPKKVGKDKGDIGSASQEF 210
           LLPKKVGK KG+IGSASQEF
Sbjct: 121 LLPKKVGKGKGEIGSASQEF 139

[Close]

BLAST of CsaV3_1G039370 vs. ExPASy Swiss-Prot
Match: P35063 (Histone H2AX OS=Picea abies OX=3329 PE=2 SV=1)

HSP 1 Score: 243.4 bits (620), Expect = 2.2e-63
Identity = 128/140 (91.43%), Postives = 133/140 (95.00%), Query Frame = 0


Query: 70  MSSTGGSTKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV 129
           MSS+G   KGGRGK K+TKSVSRS KAGLQFPVGRIARFLKAGKYAERVGAGAPVYL+AV
Sbjct: 1   MSSSG--AKGGRGKAKSTKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAV 60

Query: 130 LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT 189
           LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLG+VTIANGGVLPNIHQ 
Sbjct: 61  LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGAVTIANGGVLPNIHQV 120

Query: 190 LLPKKVGKDKGDIGSASQEF 210
           LLPKK GKDKG+IGSASQEF
Sbjct: 121 LLPKKSGKDKGEIGSASQEF 138

[Close]

BLAST of CsaV3_1G039370 vs. ExPASy Swiss-Prot
Match: A2ZL69 (Probable histone H2AXb OS=Oryza sativa subsp. indica OX=39946 GN=OsI_037312 PE=3 SV=1)

HSP 1 Score: 237.3 bits (604), Expect = 1.6e-61
Identity = 126/140 (90.00%), Postives = 130/140 (92.86%), Query Frame = 0


Query: 70  MSSTGGSTKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV 129
           MSS GG   GGRGK K +KSVSRS KAGLQFPVGRIAR+LKAGKYAERVGAGAPVYLSAV
Sbjct: 1   MSSAGGG--GGRGKSKGSKSVSRSSKAGLQFPVGRIARYLKAGKYAERVGAGAPVYLSAV 60

Query: 130 LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT 189
           LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELS+LLG+VTIA GGVLPNIHQT
Sbjct: 61  LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSRLLGAVTIAAGGVLPNIHQT 120

Query: 190 LLPKKVGKDKGDIGSASQEF 210
           LLPKK GKDK DIGSASQEF
Sbjct: 121 LLPKKGGKDKADIGSASQEF 138

[Close]

BLAST of CsaV3_1G039370 vs. ExPASy TrEMBL
Match: A0A5D3CFR7 (Histone H2A OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold16G003450 PE=3 SV=1)

HSP 1 Score: 270.4 bits (690), Expect = 6.3e-69
Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 0


Query: 70  MSSTGGSTKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV 129
           MSSTGGSTKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV
Sbjct: 1   MSSTGGSTKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV 60

Query: 130 LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT 189
           LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT
Sbjct: 61  LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT 120

Query: 190 LLPKKVGKDKGDIGSASQEF 210
           LLPKKVGKDKGDIGSASQEF
Sbjct: 121 LLPKKVGKDKGDIGSASQEF 140

[Close]

BLAST of CsaV3_1G039370 vs. ExPASy TrEMBL
Match: A0A0A0LW51 (Histone H2A OS=Cucumis sativus OX=3659 GN=Csa_1G572950 PE=3 SV=1)

HSP 1 Score: 270.4 bits (690), Expect = 6.3e-69
Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 0


Query: 70  MSSTGGSTKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV 129
           MSSTGGSTKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV
Sbjct: 1   MSSTGGSTKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV 60

Query: 130 LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT 189
           LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT
Sbjct: 61  LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT 120

Query: 190 LLPKKVGKDKGDIGSASQEF 210
           LLPKKVGKDKGDIGSASQEF
Sbjct: 121 LLPKKVGKDKGDIGSASQEF 140

[Close]

BLAST of CsaV3_1G039370 vs. ExPASy TrEMBL
Match: A0A1S3BQI1 (Histone H2A OS=Cucumis melo OX=3656 GN=LOC103492212 PE=3 SV=1)

HSP 1 Score: 270.4 bits (690), Expect = 6.3e-69
Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 0


Query: 70  MSSTGGSTKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV 129
           MSSTGGSTKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV
Sbjct: 1   MSSTGGSTKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV 60

Query: 130 LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT 189
           LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT
Sbjct: 61  LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT 120

Query: 190 LLPKKVGKDKGDIGSASQEF 210
           LLPKKVGKDKGDIGSASQEF
Sbjct: 121 LLPKKVGKDKGDIGSASQEF 140

[Close]

BLAST of CsaV3_1G039370 vs. ExPASy TrEMBL
Match: A0A6J1DMK8 (Histone H2A OS=Momordica charantia OX=3673 GN=LOC111021819 PE=3 SV=1)

HSP 1 Score: 268.5 bits (685), Expect = 2.4e-68
Identity = 139/140 (99.29%), Postives = 139/140 (99.29%), Query Frame = 0


Query: 70  MSSTGGSTKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV 129
           MSS GGSTKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV
Sbjct: 1   MSSAGGSTKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV 60

Query: 130 LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT 189
           LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT
Sbjct: 61  LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT 120

Query: 190 LLPKKVGKDKGDIGSASQEF 210
           LLPKKVGKDKGDIGSASQEF
Sbjct: 121 LLPKKVGKDKGDIGSASQEF 140

[Close]

BLAST of CsaV3_1G039370 vs. ExPASy TrEMBL
Match: V4TA53 (Histone H2A OS=Citrus clementina OX=85681 GN=CICLE_v10002804mg PE=3 SV=1)

HSP 1 Score: 266.2 bits (679), Expect = 1.2e-67
Identity = 138/140 (98.57%), Postives = 139/140 (99.29%), Query Frame = 0


Query: 70  MSSTGGSTKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV 129
           MSSTGGSTKGGRGKPKA+KSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV
Sbjct: 1   MSSTGGSTKGGRGKPKASKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV 60

Query: 130 LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT 189
           LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT
Sbjct: 61  LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT 120

Query: 190 LLPKKVGKDKGDIGSASQEF 210
           LLPKKVGK KGDIGSASQEF
Sbjct: 121 LLPKKVGKGKGDIGSASQEF 140

[Close]

BLAST of CsaV3_1G039370 vs. TAIR 10
Match: AT1G54690.1 (gamma histone variant H2AX )

HSP 1 Score: 250.8 bits (639), Expect = 1.0e-66
Identity = 134/142 (94.37%), Postives = 135/142 (95.07%), Query Frame = 0


Query: 70  MSSTGGS--TKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLS 129
           MSS  GS  TKGGRGKPKATKSVSRS KAGLQFPVGRIARFLKAGKYAERVGAGAPVYLS
Sbjct: 1   MSSGAGSGTTKGGRGKPKATKSVSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLS 60

Query: 130 AVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIH 189
           AVLEYLAAEVLELAGNAARDNKK RIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIH
Sbjct: 61  AVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIH 120

Query: 190 QTLLPKKVGKDKGDIGSASQEF 210
           QTLLP KVGK+KGDIGSASQEF
Sbjct: 121 QTLLPSKVGKNKGDIGSASQEF 142

[Close]

BLAST of CsaV3_1G039370 vs. TAIR 10
Match: AT1G08880.1 (Histone superfamily protein )

HSP 1 Score: 249.6 bits (636), Expect = 2.2e-66
Identity = 132/141 (93.62%), Postives = 135/141 (95.74%), Query Frame = 0


Query: 72  STG---GSTKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSA 131
           STG   G+TKGGRGKPKATKSVSRS KAGLQFPVGRIARFLK+GKYAERVGAGAPVYLSA
Sbjct: 2   STGAGSGTTKGGRGKPKATKSVSRSSKAGLQFPVGRIARFLKSGKYAERVGAGAPVYLSA 61

Query: 132 VLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQ 191
           VLEYLAAEVLELAGNAARDNKK RIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQ
Sbjct: 62  VLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQ 121

Query: 192 TLLPKKVGKDKGDIGSASQEF 210
           TLLP KVGK+KGDIGSASQEF
Sbjct: 122 TLLPSKVGKNKGDIGSASQEF 142

[Close]

BLAST of CsaV3_1G039370 vs. TAIR 10
Match: AT4G27230.1 (histone H2A 2 )

HSP 1 Score: 198.7 bits (504), Expect = 4.5e-51
Identity = 106/124 (85.48%), Postives = 108/124 (87.10%), Query Frame = 0


Query: 80  GRGKP----KATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAA 139
           GRGK      A KS SRS KAGLQFPVGRIARFLKAGKYAERVGAGAPVYL+AVLEYLAA
Sbjct: 3   GRGKQLGSGAAKKSTSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAA 62

Query: 140 EVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKV 199
           EVLELAGNAARDNKK RIVPRHIQLAVRNDEELSKLLG VTIANGGV+PNIH  LLPKK 
Sbjct: 63  EVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKA 122

[Close]

BLAST of CsaV3_1G039370 vs. TAIR 10
Match: AT4G27230.2 (histone H2A 2 )

HSP 1 Score: 198.7 bits (504), Expect = 4.5e-51
Identity = 106/124 (85.48%), Postives = 108/124 (87.10%), Query Frame = 0


Query: 80  GRGKP----KATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAA 139
           GRGK      A KS SRS KAGLQFPVGRIARFLKAGKYAERVGAGAPVYL+AVLEYLAA
Sbjct: 3   GRGKQLGSGAAKKSTSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAA 62

Query: 140 EVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKV 199
           EVLELAGNAARDNKK RIVPRHIQLAVRNDEELSKLLG VTIANGGV+PNIH  LLPKK 
Sbjct: 63  EVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKA 122

[Close]

BLAST of CsaV3_1G039370 vs. TAIR 10
Match: AT5G54640.1 (Histone superfamily protein )

HSP 1 Score: 197.2 bits (500), Expect = 1.3e-50
Identity = 106/125 (84.80%), Postives = 108/125 (86.40%), Query Frame = 0


Query: 75  GSTKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLA 134
           G T G  G  KAT   SRS KAGLQFPVGRIARFLKAGKYAERVGAGAPVYL+AVLEYLA
Sbjct: 5   GKTLGSGGAKKAT---SRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLA 64

Query: 135 AEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKK 194
           AEVLELAGNAARDNKK RIVPRHIQLAVRNDEELSKLLG VTIANGGV+PNIH  LLPKK
Sbjct: 65  AEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKK 124

Query: 195 VGKDK 200
            G  K
Sbjct: 125 AGASK 126

The following BLAST results are available for this feature:

BLAST of CsaV3_1G039370 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8653389.1	4.9e-108	100.00	hypothetical protein Csa_007458 [Cucumis sativus]	[more]
XP_004135645.1	1.3e-68	100.00	histone H2AX [Cucumis sativus] >XP_008450716.1 PREDICTED: histone H2AX [Cucumis ...	[more]
TYK10200.1	1.3e-68	100.00	histone H2AX [Cucumis melo var. makuwa]	[more]
XP_022154594.1	5.0e-68	99.29	probable histone H2AXb [Momordica charantia]	[more]
XP_038878621.1	6.5e-68	99.29	histone H2AX [Benincasa hispida]	[more]

BLAST of CsaV3_1G039370 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9S9K7	1.4e-65	94.37	Probable histone H2AXb OS=Arabidopsis thaliana OX=3702 GN=At1g54690 PE=1 SV=1	[more]
O04848	3.1e-65	93.62	Probable histone H2AXa OS=Arabidopsis thaliana OX=3702 GN=At1g08880 PE=1 SV=1	[more]
O65759	4.1e-65	94.29	Histone H2AX OS=Cicer arietinum OX=3827 GN=HIS2A PE=2 SV=1	[more]
P35063	2.2e-63	91.43	Histone H2AX OS=Picea abies OX=3329 PE=2 SV=1	[more]
A2ZL69	1.6e-61	90.00	Probable histone H2AXb OS=Oryza sativa subsp. indica OX=39946 GN=OsI_037312 PE=3...	[more]

BLAST of CsaV3_1G039370 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CFR7	6.3e-69	100.00	Histone H2A OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold16G003450 PE...	[more]
A0A0A0LW51	6.3e-69	100.00	Histone H2A OS=Cucumis sativus OX=3659 GN=Csa_1G572950 PE=3 SV=1	[more]
A0A1S3BQI1	6.3e-69	100.00	Histone H2A OS=Cucumis melo OX=3656 GN=LOC103492212 PE=3 SV=1	[more]
A0A6J1DMK8	2.4e-68	99.29	Histone H2A OS=Momordica charantia OX=3673 GN=LOC111021819 PE=3 SV=1	[more]
V4TA53	1.2e-67	98.57	Histone H2A OS=Citrus clementina OX=85681 GN=CICLE_v10002804mg PE=3 SV=1	[more]

BLAST of CsaV3_1G039370 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G54690.1	1.0e-66	94.37	gamma histone variant H2AX	[more]
AT1G08880.1	2.2e-66	93.62	Histone superfamily protein	[more]
AT4G27230.1	4.5e-51	85.48	histone H2A 2	[more]
AT4G27230.2	4.5e-51	85.48	histone H2A 2	[more]
AT5G54640.1	1.3e-50	84.80	Histone superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002119	Histone H2A	PRINTS	PR00620	HISTONEH2A	coord: 132..145 score: 89.46 coord: 174..192 score: 70.23 coord: 88..110 score: 69.77 coord: 117..132 score: 84.58 coord: 146..160 score: 75.49
IPR002119	Histone H2A	SMART	SM00414	h2a4	coord: 77..197 e-value: 1.0E-76 score: 270.9
IPR002119	Histone H2A	CDD	cd00074	H2A	coord: 82..194 e-value: 6.46512E-71 score: 209.499
IPR009072	Histone-fold	GENE3D	1.10.20.10	Histone, subunit A	coord: 75..202 e-value: 1.9E-62 score: 210.8
IPR009072	Histone-fold	SUPERFAMILY	47113	Histone-fold	coord: 91..194
IPR032454	Histone H2A, C-terminal domain	PFAM	PF16211	Histone_H2A_C	coord: 166..199 e-value: 5.2E-18 score: 64.5
IPR007125	Histone H2A/H2B/H3	PFAM	PF00125	Histone	coord: 68..163 e-value: 1.5E-14 score: 54.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 67..93
None	No IPR available	PANTHER	PTHR23430	HISTONE H2A	coord: 74..207
None	No IPR available	PANTHER	PTHR23430:SF322	HISTONE H2A	coord: 74..207
IPR032458	Histone H2A conserved site	PROSITE	PS00046	HISTONE_H2A	coord: 96..102

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_1G039370.1	CsaV3_1G039370.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0000786	nucleosome
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046982	protein heterodimerization activity