CsaV3_1G039290 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_1G039290
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Protein CUP-SHAPED COTYLEDON 3-like
Location	chr1: 24738869 .. 24739368 (+)
RNA-Seq Expression	CsaV3_1G039290
Synteny	CsaV3_1G039290

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGGCCGAAAGTGATGACTCTGACAAGCAGCTAAGAAATTTCAGGCCTCGACGTAAACTTAAATACCATAAGGAACGAGACCATGTAGAGTCTTCACAAAGTGTTCGATCGATAGATCTTTCCTCTGTCCACCCTCGTAAAGATGCCTGCATAAAATCGTGCGGAAATGATGACTTTGACAGAGCAGTAAGAAATTTCAGCTCTCAACGTCAACCTAAATCCCATAAGGTTCTAGACCATATCAAAGCTTCACAAAATGTCCAGTCGAAGAAGGAAACTCAACTCCAAGTAGTGTCATCCCTTGGCAAGGTGAGAGAACAGAACAAAACGCTAAACATAGGAAAATTTCATATCTGTTTTTATTATTAAAAGCAACTTGAATGACTTTAATTCTTCCATGTTTACATCAAGCGTCGTTCAATTTTCAGGTTAAAGCAGTTCCAGAACGAATTAAAGTTGTCAAACCAGCTGCAACTTCAAATAAAGATACTAAGTGA

mRNA sequence

ATGAAGGCCGAAAGTGATGACTCTGACAAGCAGCTAAGAAATTTCAGGCCTCGACGTAAACTTAAATACCATAAGGAACGAGACCATGTAGAGTCTTCACAAAGTGTTCGATCGATAGATCTTTCCTCTGTCCACCCTCGTAAAGATGCCTGCATAAAATCGTGCGGAAATGATGACTTTGACAGAGCAGTAAGAAATTTCAGCTCTCAACGTCAACCTAAATCCCATAAGGTTCTAGACCATATCAAAGCTTCACAAAATGTCCAGTCGAAGAAGGAAACTCAACTCCAAGTAGTGTCATCCCTTGGCAAGGTTAAAGCAGTTCCAGAACGAATTAAAGTTGTCAAACCAGCTGCAACTTCAAATAAAGATACTAAGTGA

Coding sequence (CDS)

ATGAAGGCCGAAAGTGATGACTCTGACAAGCAGCTAAGAAATTTCAGGCCTCGACGTAAACTTAAATACCATAAGGAACGAGACCATGTAGAGTCTTCACAAAGTGTTCGATCGATAGATCTTTCCTCTGTCCACCCTCGTAAAGATGCCTGCATAAAATCGTGCGGAAATGATGACTTTGACAGAGCAGTAAGAAATTTCAGCTCTCAACGTCAACCTAAATCCCATAAGGTTCTAGACCATATCAAAGCTTCACAAAATGTCCAGTCGAAGAAGGAAACTCAACTCCAAGTAGTGTCATCCCTTGGCAAGGTTAAAGCAGTTCCAGAACGAATTAAAGTTGTCAAACCAGCTGCAACTTCAAATAAAGATACTAAGTGA

Protein sequence

MKAESDDSDKQLRNFRPRRKLKYHKERDHVESSQSVRSIDLSSVHPRKDACIKSCGNDDFDRAVRNFSSQRQPKSHKVLDHIKASQNVQSKKETQLQVVSSLGKVKAVPERIKVVKPAATSNKDTK*

Homology

[Close]

BLAST of CsaV3_1G039290 vs. NCBI nr
Match: KAE8653385.1 (hypothetical protein Csa_007462 [Cucumis sativus])

HSP 1 Score: 240.7 bits (613), Expect = 6.7e-60
Identity = 126/126 (100.00%), Postives = 126/126 (100.00%), Query Frame = 0


Query: 1   MKAESDDSDKQLRNFRPRRKLKYHKERDHVESSQSVRSIDLSSVHPRKDACIKSCGNDDF 60
           MKAESDDSDKQLRNFRPRRKLKYHKERDHVESSQSVRSIDLSSVHPRKDACIKSCGNDDF
Sbjct: 1   MKAESDDSDKQLRNFRPRRKLKYHKERDHVESSQSVRSIDLSSVHPRKDACIKSCGNDDF 60

Query: 61  DRAVRNFSSQRQPKSHKVLDHIKASQNVQSKKETQLQVVSSLGKVKAVPERIKVVKPAAT 120
           DRAVRNFSSQRQPKSHKVLDHIKASQNVQSKKETQLQVVSSLGKVKAVPERIKVVKPAAT
Sbjct: 61  DRAVRNFSSQRQPKSHKVLDHIKASQNVQSKKETQLQVVSSLGKVKAVPERIKVVKPAAT 120

Query: 121 SNKDTK 127
           SNKDTK
Sbjct: 121 SNKDTK 126

[Close]

BLAST of CsaV3_1G039290 vs. NCBI nr
Match: TYK10207.1 (protein CUP-SHAPED COTYLEDON 3-like [Cucumis melo var. makuwa])

HSP 1 Score: 162.2 bits (409), Expect = 3.0e-36
Identity = 91/125 (72.80%), Postives = 102/125 (81.60%), Query Frame = 0


Query: 5   SDDSDKQLRNFRPRRKLKYHKERDHVESSQSVRSIDLSSVHPRKDA----CIKSCGNDDF 64
           S D D+ +RNF  +R+ K HK  DHVESS++ RSID+SS   RKD     CI SCG+ D 
Sbjct: 601 STDFDRAVRNFSSQRQPKSHKVLDHVESSENGRSIDISSARHRKDVMSINCITSCGSADS 660

Query: 65  DRAVRNFSSQRQPKSHKVLDHIKASQNVQSKKETQLQVVSSLGKVKAVPERIKVVKPAAT 124
           DRAVRNFSSQRQPKSHKV DHIKASQNVQSKKETQLQ+VSSL KVKAVPERI+VVKPAA+
Sbjct: 661 DRAVRNFSSQRQPKSHKVRDHIKASQNVQSKKETQLQLVSSLSKVKAVPERIEVVKPAAS 720

Query: 125 SNKDT 126
           SNKDT
Sbjct: 721 SNKDT 725

[Close]

BLAST of CsaV3_1G039290 vs. NCBI nr
Match: XP_016900940.1 (PREDICTED: uncharacterized protein LOC103492204 [Cucumis melo])

HSP 1 Score: 124.0 bits (310), Expect = 9.2e-25
Identity = 65/75 (86.67%), Postives = 69/75 (92.00%), Query Frame = 0


Query: 51  CIKSCGNDDFDRAVRNFSSQRQPKSHKVLDHIKASQNVQSKKETQLQVVSSLGKVKAVPE 110
           CI SCG+ D DRAVRNFS QRQPKSHKV DHIKASQNVQSKKETQLQ+VSSL KVKAVPE
Sbjct: 5   CITSCGSADSDRAVRNFSPQRQPKSHKVRDHIKASQNVQSKKETQLQLVSSLSKVKAVPE 64

Query: 111 RIKVVKPAATSNKDT 126
           RI+VVKPAA+SNKDT
Sbjct: 65  RIEVVKPAASSNKDT 79

[Close]

BLAST of CsaV3_1G039290 vs. NCBI nr
Match: ARA91515.1 (NAC domain transcription factor II [Cucumis melo])

HSP 1 Score: 110.5 bits (275), Expect = 1.0e-20
Identity = 58/67 (86.57%), Postives = 63/67 (94.03%), Query Frame = 0


Query: 59  DFDRAVRNFSSQRQPKSHKVLDHIKASQNVQSKKETQLQVVSSLGKVKAVPERIKVVKPA 118
           D DRAV+NF+SQ QPKSHKV DHIKASQNVQSKKETQLQ+VSSL KVKAVPERI+VVKPA
Sbjct: 340 DSDRAVKNFTSQHQPKSHKVRDHIKASQNVQSKKETQLQLVSSLSKVKAVPERIEVVKPA 399

Query: 119 ATSNKDT 126
           A+SNKDT
Sbjct: 400 ASSNKDT 406

[Close]

BLAST of CsaV3_1G039290 vs. NCBI nr
Match: XP_008450706.1 (PREDICTED: protein CUP-SHAPED COTYLEDON 3-like [Cucumis melo])

HSP 1 Score: 102.1 bits (253), Expect = 3.7e-18
Identity = 54/92 (58.70%), Postives = 67/92 (72.83%), Query Frame = 0


Query: 33  SQSVRSIDLSSVHPRKDACIKSCGNDDFDRAVRNFSSQRQPKSHKVLDHIKASQNVQSKK 92
           ++S+  I  S   P     ++   +DD DR  RNFSSQ QPKSHK LDH+   QNVQSK+
Sbjct: 321 TKSIPMIKESRRSPLTSKILRLDHSDDSDRGTRNFSSQHQPKSHKALDHVDTPQNVQSKR 380

Query: 93  ETQLQVVSSLGKVKAVPERIKVVKPAATSNKD 125
           ETQ+QVVSSL K +AVP+RIK+V+PAATSNKD
Sbjct: 381 ETQIQVVSSLSKAEAVPKRIKIVRPAATSNKD 412

[Close]

BLAST of CsaV3_1G039290 vs. ExPASy TrEMBL
Match: A0A0A0LW42 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G572360 PE=4 SV=1)

HSP 1 Score: 202.2 bits (513), Expect = 1.3e-48
Identity = 104/108 (96.30%), Postives = 107/108 (99.07%), Query Frame = 0


Query: 1   MKAESDDSDKQLRNFRPRRKLKYHKERDHVESSQSVRSIDLSSVHPRKDACIKSCGNDDF 60
           MKAESDDSDKQLRNFRPRRKLKYHKERDHVESSQSVRSIDLSSVHPRKDACIKSCGNDDF
Sbjct: 1   MKAESDDSDKQLRNFRPRRKLKYHKERDHVESSQSVRSIDLSSVHPRKDACIKSCGNDDF 60

Query: 61  DRAVRNFSSQRQPKSHKVLDHIKASQNVQSKKETQLQVVSSLGKVKAV 109
           DRAVRNFSSQRQPKSHKVLDHIKASQNVQSKKETQLQVVSSLGK +++
Sbjct: 61  DRAVRNFSSQRQPKSHKVLDHIKASQNVQSKKETQLQVVSSLGKRRSI 108

[Close]

BLAST of CsaV3_1G039290 vs. ExPASy TrEMBL
Match: A0A5D3CE10 (Protein CUP-SHAPED COTYLEDON 3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold16G003530 PE=4 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 1.5e-36
Identity = 91/125 (72.80%), Postives = 102/125 (81.60%), Query Frame = 0


Query: 5   SDDSDKQLRNFRPRRKLKYHKERDHVESSQSVRSIDLSSVHPRKDA----CIKSCGNDDF 64
           S D D+ +RNF  +R+ K HK  DHVESS++ RSID+SS   RKD     CI SCG+ D 
Sbjct: 601 STDFDRAVRNFSSQRQPKSHKVLDHVESSENGRSIDISSARHRKDVMSINCITSCGSADS 660

Query: 65  DRAVRNFSSQRQPKSHKVLDHIKASQNVQSKKETQLQVVSSLGKVKAVPERIKVVKPAAT 124
           DRAVRNFSSQRQPKSHKV DHIKASQNVQSKKETQLQ+VSSL KVKAVPERI+VVKPAA+
Sbjct: 661 DRAVRNFSSQRQPKSHKVRDHIKASQNVQSKKETQLQLVSSLSKVKAVPERIEVVKPAAS 720

Query: 125 SNKDT 126
           SNKDT
Sbjct: 721 SNKDT 725

[Close]

BLAST of CsaV3_1G039290 vs. ExPASy TrEMBL
Match: A0A1S4DYZ1 (uncharacterized protein LOC103492204 OS=Cucumis melo OX=3656 GN=LOC103492204 PE=4 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 4.4e-25
Identity = 65/75 (86.67%), Postives = 69/75 (92.00%), Query Frame = 0


Query: 51  CIKSCGNDDFDRAVRNFSSQRQPKSHKVLDHIKASQNVQSKKETQLQVVSSLGKVKAVPE 110
           CI SCG+ D DRAVRNFS QRQPKSHKV DHIKASQNVQSKKETQLQ+VSSL KVKAVPE
Sbjct: 5   CITSCGSADSDRAVRNFSPQRQPKSHKVRDHIKASQNVQSKKETQLQLVSSLSKVKAVPE 64

Query: 111 RIKVVKPAATSNKDT 126
           RI+VVKPAA+SNKDT
Sbjct: 65  RIEVVKPAASSNKDT 79

[Close]

BLAST of CsaV3_1G039290 vs. ExPASy TrEMBL
Match: A0A678NU60 (NAC domain transcription factor II OS=Cucumis melo OX=3656 GN=MELO3C015355 PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 5.1e-21
Identity = 58/67 (86.57%), Postives = 63/67 (94.03%), Query Frame = 0


Query: 59  DFDRAVRNFSSQRQPKSHKVLDHIKASQNVQSKKETQLQVVSSLGKVKAVPERIKVVKPA 118
           D DRAV+NF+SQ QPKSHKV DHIKASQNVQSKKETQLQ+VSSL KVKAVPERI+VVKPA
Sbjct: 340 DSDRAVKNFTSQHQPKSHKVRDHIKASQNVQSKKETQLQLVSSLSKVKAVPERIEVVKPA 399

Query: 119 ATSNKDT 126
           A+SNKDT
Sbjct: 400 ASSNKDT 406

[Close]

BLAST of CsaV3_1G039290 vs. ExPASy TrEMBL
Match: A0A1S3BQH1 (protein CUP-SHAPED COTYLEDON 3-like OS=Cucumis melo OX=3656 GN=LOC103492206 PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 1.8e-18
Identity = 54/92 (58.70%), Postives = 67/92 (72.83%), Query Frame = 0


Query: 33  SQSVRSIDLSSVHPRKDACIKSCGNDDFDRAVRNFSSQRQPKSHKVLDHIKASQNVQSKK 92
           ++S+  I  S   P     ++   +DD DR  RNFSSQ QPKSHK LDH+   QNVQSK+
Sbjct: 321 TKSIPMIKESRRSPLTSKILRLDHSDDSDRGTRNFSSQHQPKSHKALDHVDTPQNVQSKR 380

Query: 93  ETQLQVVSSLGKVKAVPERIKVVKPAATSNKD 125
           ETQ+QVVSSL K +AVP+RIK+V+PAATSNKD
Sbjct: 381 ETQIQVVSSLSKAEAVPKRIKIVRPAATSNKD 412

The following BLAST results are available for this feature:

BLAST of CsaV3_1G039290 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8653385.1	6.7e-60	100.00	hypothetical protein Csa_007462 [Cucumis sativus]	[more]
TYK10207.1	3.0e-36	72.80	protein CUP-SHAPED COTYLEDON 3-like [Cucumis melo var. makuwa]	[more]
XP_016900940.1	9.2e-25	86.67	PREDICTED: uncharacterized protein LOC103492204 [Cucumis melo]	[more]
ARA91515.1	1.0e-20	86.57	NAC domain transcription factor II [Cucumis melo]	[more]
XP_008450706.1	3.7e-18	58.70	PREDICTED: protein CUP-SHAPED COTYLEDON 3-like [Cucumis melo]	[more]

BLAST of CsaV3_1G039290 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_1G039290 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LW42	1.3e-48	96.30	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G572360 PE=4 SV=1	[more]
A0A5D3CE10	1.5e-36	72.80	Protein CUP-SHAPED COTYLEDON 3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5...	[more]
A0A1S4DYZ1	4.4e-25	86.67	uncharacterized protein LOC103492204 OS=Cucumis melo OX=3656 GN=LOC103492204 PE=...	[more]
A0A678NU60	5.1e-21	86.57	NAC domain transcription factor II OS=Cucumis melo OX=3656 GN=MELO3C015355 PE=4 ...	[more]
A0A1S3BQH1	1.8e-18	58.70	protein CUP-SHAPED COTYLEDON 3-like OS=Cucumis melo OX=3656 GN=LOC103492206 PE=4...	[more]

BLAST of CsaV3_1G039290 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..43

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_1G039290.1	CsaV3_1G039290.1	mRNA