CsaV3_1G038100 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_1G038100
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr1: 23911466 .. 23911939 (-)
RNA-Seq Expression	CsaV3_1G038100
Synteny	CsaV3_1G038100

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGAAACGCTGTGGTTTCCGCCGGAATGGATGGAATCTGGAGGTCAGTGTATTGAGAATAAACAACACGAATGTAGGTGATGCAGCGGAGGGAAGAGAGTACGAAATTATTTTGGACTCCCTGGATGACCGGAAAATGATTTCGAAATTTGTCGTTTTATTTATTTTTTTTATAAAAAAAGTAGATGAGATTACTAAAACGGAGCCCCTCACAACACGGATCAAGCATTCTCGCTCGCCCCCGTTCCCTTTCCATTCTCACATATCATTCTCCTCTCTCCTTTTTCTCACCATCTCCGTCTCCAACACTTCATCTACCTCTGTTGTCTCACATTCTGACGTTCAGTCTCACTCGGCAACACAAACTGAAAAGAGGGAGAGAAGAGGAACAAGAAGTGACATGGAGCTGCTCATGTGGACTCGCGAAGCTGCTTCCAATGCATGGTCTCATCAAGAAGAAAGTACTAAATGA

mRNA sequence

ATGAAGAAACGCTGTGGTTTCCGCCGGAATGGATGGAATCTGGAGGTCAGTGTATTGAGAATAAACAACACGAATGTAGGTGATGCAGCGGAGGGAAGAGAGTACGAAATTATTTTGGACTCCCTGGATGACCGGAAAATGATTTCGAAATTTGTCGTTTTATTTATTTTTTTTATAAAAAAAGTAGATGAGATTACTAAAACGGAGCCCCTCACAACACGGATCAAGCATTCTCGCTCGCCCCCGTTCCCTTTCCATTCTCACATATCATTCTCCTCTCTCCTTTTTCTCACCATCTCCGTCTCCAACACTTCATCTACCTCTGTTGTCTCACATTCTGACGTTCAGTCTCACTCGGCAACACAAACTGAAAAGAGGGAGAGAAGAGGAACAAGAAGTGACATGGAGCTGCTCATGTGGACTCGCGAAGCTGCTTCCAATGCATGGTCTCATCAAGAAGAAAGTACTAAATGA

Coding sequence (CDS)

ATGAAGAAACGCTGTGGTTTCCGCCGGAATGGATGGAATCTGGAGGTCAGTGTATTGAGAATAAACAACACGAATGTAGGTGATGCAGCGGAGGGAAGAGAGTACGAAATTATTTTGGACTCCCTGGATGACCGGAAAATGATTTCGAAATTTGTCGTTTTATTTATTTTTTTTATAAAAAAAGTAGATGAGATTACTAAAACGGAGCCCCTCACAACACGGATCAAGCATTCTCGCTCGCCCCCGTTCCCTTTCCATTCTCACATATCATTCTCCTCTCTCCTTTTTCTCACCATCTCCGTCTCCAACACTTCATCTACCTCTGTTGTCTCACATTCTGACGTTCAGTCTCACTCGGCAACACAAACTGAAAAGAGGGAGAGAAGAGGAACAAGAAGTGACATGGAGCTGCTCATGTGGACTCGCGAAGCTGCTTCCAATGCATGGTCTCATCAAGAAGAAAGTACTAAATGA

Protein sequence

MKKRCGFRRNGWNLEVSVLRINNTNVGDAAEGREYEIILDSLDDRKMISKFVVLFIFFIKKVDEITKTEPLTTRIKHSRSPPFPFHSHISFSSLLFLTISVSNTSSTSVVSHSDVQSHSATQTEKRERRGTRSDMELLMWTREAASNAWSHQEESTK*

Homology

[Close]

BLAST of CsaV3_1G038100 vs. NCBI nr
Match: KGN65994.1 (hypothetical protein Csa_007566 [Cucumis sativus])

HSP 1 Score: 303.9 bits (777), Expect = 8.0e-79
Identity = 157/157 (100.00%), Postives = 157/157 (100.00%), Query Frame = 0


Query: 1   MKKRCGFRRNGWNLEVSVLRINNTNVGDAAEGREYEIILDSLDDRKMISKFVVLFIFFIK 60
           MKKRCGFRRNGWNLEVSVLRINNTNVGDAAEGREYEIILDSLDDRKMISKFVVLFIFFIK
Sbjct: 1   MKKRCGFRRNGWNLEVSVLRINNTNVGDAAEGREYEIILDSLDDRKMISKFVVLFIFFIK 60

Query: 61  KVDEITKTEPLTTRIKHSRSPPFPFHSHISFSSLLFLTISVSNTSSTSVVSHSDVQSHSA 120
           KVDEITKTEPLTTRIKHSRSPPFPFHSHISFSSLLFLTISVSNTSSTSVVSHSDVQSHSA
Sbjct: 61  KVDEITKTEPLTTRIKHSRSPPFPFHSHISFSSLLFLTISVSNTSSTSVVSHSDVQSHSA 120

Query: 121 TQTEKRERRGTRSDMELLMWTREAASNAWSHQEESTK 158
           TQTEKRERRGTRSDMELLMWTREAASNAWSHQEESTK
Sbjct: 121 TQTEKRERRGTRSDMELLMWTREAASNAWSHQEESTK 157

[Close]

BLAST of CsaV3_1G038100 vs. NCBI nr
Match: TYK10315.1 (hypothetical protein E5676_scaffold16G004690 [Cucumis melo var. makuwa])

HSP 1 Score: 56.6 bits (135), Expect = 2.2e-04
Identity = 27/36 (75.00%), Postives = 29/36 (80.56%), Query Frame = 0


Query: 1  MKKRCGFRRNGWNLEVSVLRINNTNVGDAAEGREYE 37
          MKKRCGF RNG N EV ++RINNTNV DAAEG E E
Sbjct: 1  MKKRCGFGRNGGNPEVRLMRINNTNVVDAAEGSEKE 36

[Close]

BLAST of CsaV3_1G038100 vs. ExPASy TrEMBL
Match: A0A0A0LYB8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G560770 PE=4 SV=1)

HSP 1 Score: 303.9 bits (777), Expect = 3.9e-79
Identity = 157/157 (100.00%), Postives = 157/157 (100.00%), Query Frame = 0


Query: 1   MKKRCGFRRNGWNLEVSVLRINNTNVGDAAEGREYEIILDSLDDRKMISKFVVLFIFFIK 60
           MKKRCGFRRNGWNLEVSVLRINNTNVGDAAEGREYEIILDSLDDRKMISKFVVLFIFFIK
Sbjct: 1   MKKRCGFRRNGWNLEVSVLRINNTNVGDAAEGREYEIILDSLDDRKMISKFVVLFIFFIK 60

Query: 61  KVDEITKTEPLTTRIKHSRSPPFPFHSHISFSSLLFLTISVSNTSSTSVVSHSDVQSHSA 120
           KVDEITKTEPLTTRIKHSRSPPFPFHSHISFSSLLFLTISVSNTSSTSVVSHSDVQSHSA
Sbjct: 61  KVDEITKTEPLTTRIKHSRSPPFPFHSHISFSSLLFLTISVSNTSSTSVVSHSDVQSHSA 120

Query: 121 TQTEKRERRGTRSDMELLMWTREAASNAWSHQEESTK 158
           TQTEKRERRGTRSDMELLMWTREAASNAWSHQEESTK
Sbjct: 121 TQTEKRERRGTRSDMELLMWTREAASNAWSHQEESTK 157

[Close]

BLAST of CsaV3_1G038100 vs. ExPASy TrEMBL
Match: A0A5D3CFP2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold16G004690 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 1.1e-04
Identity = 27/36 (75.00%), Postives = 29/36 (80.56%), Query Frame = 0


Query: 1  MKKRCGFRRNGWNLEVSVLRINNTNVGDAAEGREYE 37
          MKKRCGF RNG N EV ++RINNTNV DAAEG E E
Sbjct: 1  MKKRCGFGRNGGNPEVRLMRINNTNVVDAAEGSEKE 36

The following BLAST results are available for this feature:

BLAST of CsaV3_1G038100 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN65994.1	8.0e-79	100.00	hypothetical protein Csa_007566 [Cucumis sativus]	[more]
TYK10315.1	2.2e-04	75.00	hypothetical protein E5676_scaffold16G004690 [Cucumis melo var. makuwa]	[more]

BLAST of CsaV3_1G038100 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_1G038100 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LYB8	3.9e-79	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G560770 PE=4 SV=1	[more]
A0A5D3CFP2	1.1e-04	75.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of CsaV3_1G038100 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 119..133
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 110..133

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_1G038100.1	CsaV3_1G038100.1	mRNA