CsaV3_1G037970 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_1G037970
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	C3H1-type domain-containing protein
Location	chr1: 23817842 .. 23819025 (-)
RNA-Seq Expression	CsaV3_1G037970
Synteny	CsaV3_1G037970

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCATTGGGAAAATATTATTGCGACTACTGCGATAAGCAATTTCAAGACACTCCCTTTGCTCGAAAACGCCATCTTCAAAGTCTCTCTCATCAGAAGGCCAAAGCTCTTTGGTTCGACTCCTTCAAAGGTCCAACACTGCATCTCCTCTCTTCTTTCTCCATTTTCTCCTCATTTCCCCCCCTCAATTCTTCCTTTTTCCCTTGCAGATTTCAATCAATCTTTCCCTCATTCCTTCCACTTCCGACCACGCATCTGTAATCGATTCCTCTCTACGGTAATTCTCAATTCTTCTTCTTCTCTTCCCTTCGCATCGTCATCCATTTTCTTTTAACCTAATTTTTGCTTCTTCTTCTTCTTCATTTCAAAGGGGTTTTGCCAATACGGCGATTCTTGTAAATATTTTCACCCCAATAACAACAATGACAATACGTACAACTCCAGTTCCTACCCTATGGCAGGTATCCCGAAATTTATTTTCGTTTTCCATCCATTTCCTGTCTAATTTTGAATCTAATTCACAGGTTTCCCGGAAAATTATCAACCCCCAAATGTTCCGGTTAATCGATTTGTAGACGGCAACTCTTCTTCCACAGGTAATTTTAAAGTGAACTTGTTGCTGGTTATTTTTGACAGCTTTATGTGTTCCACATTTTATTTGTTTATTTATTATTGCCATAAGAAACAGCCGTGTATTTGCTTATTCATAGCAACCATTCATCTTCATTGATCGATTTTGAACAGCTCTACATATTGTTTGGCAACCAGGTTTATATTTTTAGTTTTTGAAAATTAACCATCTAAAACACTAATCCACCTCTAAGTTCCTTGCTTTATTGTATAGTTCCTACCAATGTTTTAAAAAATCAGGCCAAGTTGTGAAACTTAAAAAAATTTGCTTTTATCTTTAGAATTAGCTAAAAATTCAACTCTTTTACCCAATAAAAGATGGTATGAGTGTTGTAAGAATTATAGAGAACATGGACTTAATTTTCATGAAACTAAAACTAAATTGTTACCAACCCAGTGTTCAGGTTTCTGTTCCTTACATTAGTTCATAATCTTTATCTTCAGGTAGTTTAATTAGCGATAGACTGGGAACATCATGGGGAAATTTACCTCCATCACTGATGCCTCCTCCAGACGGTGGATACCCACCTCTTCCTTTCGTAGATTGGGGATAA

mRNA sequence

ATGCCATTGGGAAAATATTATTGCGACTACTGCGATAAGCAATTTCAAGACACTCCCTTTGCTCGAAAACGCCATCTTCAAAGTCTCTCTCATCAGAAGGCCAAAGCTCTTTGGTTCGACTCCTTCAAAGATTTCAATCAATCTTTCCCTCATTCCTTCCACTTCCGACCACGCATCTGTAATCGATTCCTCTCTACGGGGTTTTGCCAATACGGCGATTCTTGTAAATATTTTCACCCCAATAACAACAATGACAATACGTACAACTCCAGTTCCTACCCTATGGCAGGTTTCCCGGAAAATTATCAACCCCCAAATGTTCCGGTTAATCGATTTGTAGACGGCAACTCTTCTTCCACAGGTAGTTTAATTAGCGATAGACTGGGAACATCATGGGGAAATTTACCTCCATCACTGATGCCTCCTCCAGACGGTGGATACCCACCTCTTCCTTTCGTAGATTGGGGATAA

Coding sequence (CDS)

ATGCCATTGGGAAAATATTATTGCGACTACTGCGATAAGCAATTTCAAGACACTCCCTTTGCTCGAAAACGCCATCTTCAAAGTCTCTCTCATCAGAAGGCCAAAGCTCTTTGGTTCGACTCCTTCAAAGATTTCAATCAATCTTTCCCTCATTCCTTCCACTTCCGACCACGCATCTGTAATCGATTCCTCTCTACGGGGTTTTGCCAATACGGCGATTCTTGTAAATATTTTCACCCCAATAACAACAATGACAATACGTACAACTCCAGTTCCTACCCTATGGCAGGTTTCCCGGAAAATTATCAACCCCCAAATGTTCCGGTTAATCGATTTGTAGACGGCAACTCTTCTTCCACAGGTAGTTTAATTAGCGATAGACTGGGAACATCATGGGGAAATTTACCTCCATCACTGATGCCTCCTCCAGACGGTGGATACCCACCTCTTCCTTTCGTAGATTGGGGATAA

Protein sequence

MPLGKYYCDYCDKQFQDTPFARKRHLQSLSHQKAKALWFDSFKDFNQSFPHSFHFRPRICNRFLSTGFCQYGDSCKYFHPNNNNDNTYNSSSYPMAGFPENYQPPNVPVNRFVDGNSSSTGSLISDRLGTSWGNLPPSLMPPPDGGYPPLPFVDWG*

Homology

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BLAST of CsaV3_1G037970 vs. NCBI nr
Match: XP_004135569.1 (zinc finger CCCH domain-containing protein 3 [Cucumis sativus] >KGN65981.1 hypothetical protein Csa_007019 [Cucumis sativus])

HSP 1 Score: 345.1 bits (884), Expect = 3.1e-91
Identity = 156/156 (100.00%), Postives = 156/156 (100.00%), Query Frame = 0


Query: 1   MPLGKYYCDYCDKQFQDTPFARKRHLQSLSHQKAKALWFDSFKDFNQSFPHSFHFRPRIC 60
           MPLGKYYCDYCDKQFQDTPFARKRHLQSLSHQKAKALWFDSFKDFNQSFPHSFHFRPRIC
Sbjct: 1   MPLGKYYCDYCDKQFQDTPFARKRHLQSLSHQKAKALWFDSFKDFNQSFPHSFHFRPRIC 60

Query: 61  NRFLSTGFCQYGDSCKYFHPNNNNDNTYNSSSYPMAGFPENYQPPNVPVNRFVDGNSSST 120
           NRFLSTGFCQYGDSCKYFHPNNNNDNTYNSSSYPMAGFPENYQPPNVPVNRFVDGNSSST
Sbjct: 61  NRFLSTGFCQYGDSCKYFHPNNNNDNTYNSSSYPMAGFPENYQPPNVPVNRFVDGNSSST 120

Query: 121 GSLISDRLGTSWGNLPPSLMPPPDGGYPPLPFVDWG 157
           GSLISDRLGTSWGNLPPSLMPPPDGGYPPLPFVDWG
Sbjct: 121 GSLISDRLGTSWGNLPPSLMPPPDGGYPPLPFVDWG 156

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BLAST of CsaV3_1G037970 vs. NCBI nr
Match: XP_008450521.1 (PREDICTED: zinc finger CCCH domain-containing protein 3 [Cucumis melo] >KAA0050958.1 zinc finger CCCH domain-containing protein 3 [Cucumis melo var. makuwa] >TYK10305.1 zinc finger CCCH domain-containing protein 3 [Cucumis melo var. makuwa])

HSP 1 Score: 321.6 bits (823), Expect = 3.7e-84
Identity = 146/157 (92.99%), Postives = 153/157 (97.45%), Query Frame = 0


Query: 1   MPLGKYYCDYCDKQFQDTPFARKRHLQSLSHQKAKALWFDSFKDFNQSFPHSFHFRPRIC 60
           MPLGKYYCDYCDKQFQDTPFARKRHLQSLSHQKAKALWFDSFKD NQ+FPHSFHFRPRIC
Sbjct: 1   MPLGKYYCDYCDKQFQDTPFARKRHLQSLSHQKAKALWFDSFKDSNQTFPHSFHFRPRIC 60

Query: 61  NRFLSTGFCQYGDSCKYFHP-NNNNDNTYNSSSYPMAGFPENYQPPNVPVNRFVDGNSSS 120
           NRFLSTGFCQYGDSCKYFHP NN+NDNT+NSSS+P+AGFPEN QPPNVP NRFVDGNSSS
Sbjct: 61  NRFLSTGFCQYGDSCKYFHPKNNHNDNTHNSSSHPIAGFPENNQPPNVPFNRFVDGNSSS 120

Query: 121 TGSLISDRLGTSWGNLPPSLMPPPDGGYPPLPFVDWG 157
           TGSL+SDRLGTSWGNLPPSLMPPP+GGYPPLPFVDWG
Sbjct: 121 TGSLVSDRLGTSWGNLPPSLMPPPEGGYPPLPFVDWG 157

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BLAST of CsaV3_1G037970 vs. NCBI nr
Match: XP_038879279.1 (zinc finger CCCH domain-containing protein 3 [Benincasa hispida])

HSP 1 Score: 274.2 bits (700), Expect = 6.8e-70
Identity = 130/159 (81.76%), Postives = 142/159 (89.31%), Query Frame = 0


Query: 1   MPLGKYYCDYCDKQFQDTPFARKRHLQSLSHQKAKALWFDSFKDFNQSFPHSFHFRPRIC 60
           MPLGKYYCDYC+KQFQDTPFARKRHLQSLSHQKAKALWFDSFKD NQ   H+  FRP  C
Sbjct: 1   MPLGKYYCDYCEKQFQDTPFARKRHLQSLSHQKAKALWFDSFKDPNQPLFHA--FRPGFC 60

Query: 61  NRFLSTGFCQYGDSCKYFHPNN--NNDNTYNSSSYPMAGFPENYQPPNVPVNRFVDGNSS 120
           NRFL+TGFCQYGDSCKYFHPNN  NN+NT+NS+S+P+AGFPEN QPPN PVN+F DG SS
Sbjct: 61  NRFLTTGFCQYGDSCKYFHPNNNYNNNNTHNSTSHPIAGFPENNQPPNFPVNQFADG-SS 120

Query: 121 STGSLISDRLG-TSWGNLPPSLMPPPDGGYPPLPFVDWG 157
            TGSL+SD +G TSWGNLPPSLMPPP+GGYPPLPFVDWG
Sbjct: 121 FTGSLVSDSMGRTSWGNLPPSLMPPPEGGYPPLPFVDWG 156

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BLAST of CsaV3_1G037970 vs. NCBI nr
Match: XP_022931617.1 (zinc finger CCCH domain-containing protein 3 [Cucurbita moschata] >XP_022931618.1 zinc finger CCCH domain-containing protein 3 [Cucurbita moschata])

HSP 1 Score: 250.0 bits (637), Expect = 1.4e-62
Identity = 120/156 (76.92%), Postives = 132/156 (84.62%), Query Frame = 0


Query: 1   MPLGKYYCDYCDKQFQDTPFARKRHLQSLSHQKAKALWFDSFKDFNQSFPHSFHFRPRIC 60
           MPLGKYYCDYC+KQFQDTPFARKRHLQSLSH KAKALWFDSF+D NQ   H+  F  R+C
Sbjct: 1   MPLGKYYCDYCEKQFQDTPFARKRHLQSLSHHKAKALWFDSFRDSNQPLSHA--FPTRLC 60

Query: 61  NRFLSTGFCQYGDSCKYFHPNNNNDNTYNSSSYPMAGFPENYQPPNVPVNRFVDGNSSST 120
           NRFL+TGFCQYGDSC YFH NN   N   SSS+P+AGFPEN Q PN+PVN+F++G SS T
Sbjct: 61  NRFLTTGFCQYGDSCNYFHSNN---NPQYSSSHPIAGFPENNQAPNIPVNQFMEG-SSLT 120

Query: 121 GSLISDRLGTSWGNLPPSLMPPPDGGYPPLPFVDWG 157
           GSL  DRL TSWGNLPPSLMPPP+GGYPPLPFVDWG
Sbjct: 121 GSL--DRLRTSWGNLPPSLMPPPEGGYPPLPFVDWG 148

[Close]

BLAST of CsaV3_1G037970 vs. NCBI nr
Match: XP_022989487.1 (zinc finger CCCH domain-containing protein 3 isoform X1 [Cucurbita maxima] >XP_022989488.1 zinc finger CCCH domain-containing protein 3 isoform X1 [Cucurbita maxima])

HSP 1 Score: 250.0 bits (637), Expect = 1.4e-62
Identity = 123/156 (78.85%), Postives = 132/156 (84.62%), Query Frame = 0


Query: 1   MPLGKYYCDYCDKQFQDTPFARKRHLQSLSHQKAKALWFDSFKDFNQSFPHSFHFRPRIC 60
           MPLGKYYCDYC+KQFQDTPFARKRHLQSLSHQKAKALWFDSF+D NQ  P S  F  R+C
Sbjct: 1   MPLGKYYCDYCEKQFQDTPFARKRHLQSLSHQKAKALWFDSFRDSNQ--PFSDAFGTRVC 60

Query: 61  NRFLSTGFCQYGDSCKYFHPNNNNDNTYNSSSYPMAGFPENYQPPNVPVNRFVDGNSSST 120
           NRFL+TGFCQYGDSCKYFH  N   N   SSS P+AGFPEN Q PNVPVN+F++G SS T
Sbjct: 61  NRFLTTGFCQYGDSCKYFHSKN---NLQYSSSQPIAGFPENNQAPNVPVNQFMEG-SSLT 120

Query: 121 GSLISDRLGTSWGNLPPSLMPPPDGGYPPLPFVDWG 157
           GSL  DRL TSWGNLPPSLMPPP+GGYPPLPFVDWG
Sbjct: 121 GSL--DRLRTSWGNLPPSLMPPPEGGYPPLPFVDWG 148

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BLAST of CsaV3_1G037970 vs. ExPASy Swiss-Prot
Match: Q0JP11 (Zinc finger CCCH domain-containing protein 3 OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0252200 PE=2 SV=2)

HSP 1 Score: 151.0 bits (380), Expect = 1.1e-35
Identity = 83/171 (48.54%), Postives = 104/171 (60.82%), Query Frame = 0


Query: 1   MPLGKYYCDYCDKQFQDTPFARKRHLQSLSHQKAKALWFDSFK-----DFNQSFPHSFHF 60
           MPLGKYYCDYC+KQFQDTP ARKRHL    H +A+ALW+D+ +           P   H 
Sbjct: 1   MPLGKYYCDYCEKQFQDTPAARKRHLDGAQHHRARALWYDAVRRQELHGGGGGAPPLLH- 60

Query: 61  RP-----RICNRFLSTGFCQYGDSCKYFHPNNNNDNTYNSSSYPMAG---FPENYQ--PP 120
           +P      +C  F+ TG C++GDSC+YFHP     N   + S P++G      N Q   P
Sbjct: 61  QPGAAAIGVCQHFVRTGTCKFGDSCRYFHPKPPPANPGPAPSGPVSGPMAQQSNIQGSQP 120

Query: 121 NVPVNRFVDGNSSSTGSLISDRLGTSWGNLPPSLMPPPDGGYPPLPFVDWG 157
           N    +  DG SS +G+++     TSWGNLPPSL PPP+GGYPP PFVDWG
Sbjct: 121 NFVGYQAADG-SSFSGNILGGH--TSWGNLPPSLRPPPEGGYPPFPFVDWG 167

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BLAST of CsaV3_1G037970 vs. ExPASy Swiss-Prot
Match: Q2TA39 (Zinc finger matrin-type protein 5 OS=Bos taurus OX=9913 GN=ZMAT5 PE=2 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 1.2e-16
Identity = 55/173 (31.79%), Postives = 81/173 (46.82%), Query Frame = 0


Query: 5   KYYCDYCDKQFQDTPFARKRHLQSLSHQKAKALWFDSFKDFNQSFPHSFHFRPRICNRFL 64
           +Y+CDYCD+ FQD    RK+HL  L H KAK LW+D F+D         + RP  C +FL
Sbjct: 4   RYFCDYCDRSFQDNLHNRKKHLNGLQHLKAKKLWYDMFRDAAAILLDEQNKRP--CRKFL 63

Query: 65  STGFCQYGDSCKYFHPNNNN--------DNTYNSSSYPMAGFPENYQPPNVPVNRFVDGN 124
            TG C +G +C++ H +  +        +    +  +P+    +  + P V +  +++  
Sbjct: 64  LTGQCDFGSNCRFSHMSERDLQELSVQVEEERRAREWPL----DVAELPEVCLEDWLEKR 123

Query: 125 SSSTGSLISDR----------LGTSW---GNLPPSLMPPPDGGYPPLPFVDWG 157
           +    S  S R              W     LPPSL  PP GG+P  P V WG
Sbjct: 124 AKRLSSAPSSRAEPVRATVFQYPVGWPPVQELPPSLRAPPPGGWPLQPSVQWG 170

[Close]

BLAST of CsaV3_1G037970 vs. ExPASy Swiss-Prot
Match: Q9UDW3 (Zinc finger matrin-type protein 5 OS=Homo sapiens OX=9606 GN=ZMAT5 PE=1 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 2.9e-15
Identity = 56/169 (33.14%), Postives = 78/169 (46.15%), Query Frame = 0


Query: 5   KYYCDYCDKQFQDTPFARKRHLQSLSHQKAKALWFDSFKDFNQSFPHSFHFRPRICNRFL 64
           +Y+CDYCD+ FQD    RK+HL  L H KAK +W+D F+D         + RP  C +FL
Sbjct: 4   RYFCDYCDRSFQDNLHNRKKHLNGLQHLKAKKVWYDMFRDAAAILLDEQNKRP--CRKFL 63

Query: 65  STGFCQYGDSCKYFHPNNNNDNTYNSSSYPMAGFPE-NYQPPNVPVNRFVD------GNS 124
            TG C +G +C++ H +  +    +          E     P +P     D         
Sbjct: 64  LTGQCDFGSNCRFSHMSERDLQELSIQVEEERRAREWLLDAPELPEGHLEDWLEKRAKRL 123

Query: 125 SSTGSLISDRLGTS-------W---GNLPPSLMPPPDGGYPPLPFVDWG 157
           SS  S  ++ + T+       W     LPPSL  PP GG+P  P V WG
Sbjct: 124 SSAPSSRAEPIRTTVFQYPVGWPPVQELPPSLRAPPPGGWPLQPRVQWG 170

[Close]

BLAST of CsaV3_1G037970 vs. ExPASy Swiss-Prot
Match: Q9CQR5 (Zinc finger matrin-type protein 5 OS=Mus musculus OX=10090 GN=Zmat5 PE=2 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 3.8e-15
Identity = 53/173 (30.64%), Postives = 79/173 (45.66%), Query Frame = 0


Query: 5   KYYCDYCDKQFQDTPFARKRHLQSLSHQKAKALWFDSFKDFNQSFPHSFHFRPRICNRFL 64
           +Y+CDYCD+ FQD    RK+HL  L H KAK +W+D F+D         + RP  C +FL
Sbjct: 4   RYFCDYCDRSFQDNLHNRKKHLNGLQHLKAKKVWYDMFRDAAAILLDEQNKRP--CRKFL 63

Query: 65  STGFCQYGDSCKYFHPNNNN--------DNTYNSSSYPMAGFPENYQPPNVPVNRFVDGN 124
            TG C +G +C++ H +  +        +    +  +P+    E  + P   +  +++  
Sbjct: 64  LTGQCDFGSNCRFSHMSEQDLQELSVQVEEERRAREWPL----ETAELPEGHLEDWLEKR 123

Query: 125 SSSTGSLISDR----------LGTSW---GNLPPSLMPPPDGGYPPLPFVDWG 157
           +    S  S R              W     LPPSL  PP GG+  L  V WG
Sbjct: 124 AKRLSSAPSSRAEPIRTTVFQYPVGWPPMQELPPSLRAPPPGGWSVLSKVQWG 170

[Close]

BLAST of CsaV3_1G037970 vs. ExPASy Swiss-Prot
Match: Q6AXL8 (Zinc finger matrin-type protein 5 OS=Danio rerio OX=7955 GN=zmat5 PE=2 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 2.7e-13
Identity = 49/172 (28.49%), Postives = 73/172 (42.44%), Query Frame = 0


Query: 5   KYYCDYCDKQFQDTPFARKRHLQSLSHQKAKALWFDSFKDFNQSFPHSFHFRPRICNRFL 64
           +YYCDYCD+ FQD    RK+HL  + H +AK  WFD+F+D       +      +C +F+
Sbjct: 4   RYYCDYCDRSFQDNLHNRKKHLNGVQHHRAKKAWFDNFRDAATLL--NDERSKEVCRKFV 63

Query: 65  STGFCQYGDSCKYFHPNNNNDNTYN---SSSYPMAGFPENYQPPNVPVNRFVDGNSSSTG 124
            TG C +G SC++ H +                    P+        V+ ++        
Sbjct: 64  QTGQCVFGTSCRFSHMSEKQMKMLEQKIDDEKRQKEDPDQDGSSERSVDEWLSRREKKLA 123

Query: 125 SLISDRL-----------------GTSWGNLPPSLMPPPDGGYPPLPFVDWG 157
           +L S R+                   S  +LPPSL PPP GG+      +WG
Sbjct: 124 ALTSGRVLRMEEEECTENIEIPPYLLSIPDLPPSLHPPPAGGWRVTVHNEWG 173

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BLAST of CsaV3_1G037970 vs. ExPASy TrEMBL
Match: A0A0A0M1B0 (C3H1-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G560650 PE=4 SV=1)

HSP 1 Score: 345.1 bits (884), Expect = 1.5e-91
Identity = 156/156 (100.00%), Postives = 156/156 (100.00%), Query Frame = 0


Query: 1   MPLGKYYCDYCDKQFQDTPFARKRHLQSLSHQKAKALWFDSFKDFNQSFPHSFHFRPRIC 60
           MPLGKYYCDYCDKQFQDTPFARKRHLQSLSHQKAKALWFDSFKDFNQSFPHSFHFRPRIC
Sbjct: 1   MPLGKYYCDYCDKQFQDTPFARKRHLQSLSHQKAKALWFDSFKDFNQSFPHSFHFRPRIC 60

Query: 61  NRFLSTGFCQYGDSCKYFHPNNNNDNTYNSSSYPMAGFPENYQPPNVPVNRFVDGNSSST 120
           NRFLSTGFCQYGDSCKYFHPNNNNDNTYNSSSYPMAGFPENYQPPNVPVNRFVDGNSSST
Sbjct: 61  NRFLSTGFCQYGDSCKYFHPNNNNDNTYNSSSYPMAGFPENYQPPNVPVNRFVDGNSSST 120

Query: 121 GSLISDRLGTSWGNLPPSLMPPPDGGYPPLPFVDWG 157
           GSLISDRLGTSWGNLPPSLMPPPDGGYPPLPFVDWG
Sbjct: 121 GSLISDRLGTSWGNLPPSLMPPPDGGYPPLPFVDWG 156

[Close]

BLAST of CsaV3_1G037970 vs. ExPASy TrEMBL
Match: A0A5D3CFN3 (Zinc finger CCCH domain-containing protein 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold16G004580 PE=4 SV=1)

HSP 1 Score: 321.6 bits (823), Expect = 1.8e-84
Identity = 146/157 (92.99%), Postives = 153/157 (97.45%), Query Frame = 0


Query: 1   MPLGKYYCDYCDKQFQDTPFARKRHLQSLSHQKAKALWFDSFKDFNQSFPHSFHFRPRIC 60
           MPLGKYYCDYCDKQFQDTPFARKRHLQSLSHQKAKALWFDSFKD NQ+FPHSFHFRPRIC
Sbjct: 1   MPLGKYYCDYCDKQFQDTPFARKRHLQSLSHQKAKALWFDSFKDSNQTFPHSFHFRPRIC 60

Query: 61  NRFLSTGFCQYGDSCKYFHP-NNNNDNTYNSSSYPMAGFPENYQPPNVPVNRFVDGNSSS 120
           NRFLSTGFCQYGDSCKYFHP NN+NDNT+NSSS+P+AGFPEN QPPNVP NRFVDGNSSS
Sbjct: 61  NRFLSTGFCQYGDSCKYFHPKNNHNDNTHNSSSHPIAGFPENNQPPNVPFNRFVDGNSSS 120

Query: 121 TGSLISDRLGTSWGNLPPSLMPPPDGGYPPLPFVDWG 157
           TGSL+SDRLGTSWGNLPPSLMPPP+GGYPPLPFVDWG
Sbjct: 121 TGSLVSDRLGTSWGNLPPSLMPPPEGGYPPLPFVDWG 157

[Close]

BLAST of CsaV3_1G037970 vs. ExPASy TrEMBL
Match: A0A1S3BQ25 (zinc finger CCCH domain-containing protein 3 OS=Cucumis melo OX=3656 GN=LOC103492103 PE=4 SV=1)

HSP 1 Score: 321.6 bits (823), Expect = 1.8e-84
Identity = 146/157 (92.99%), Postives = 153/157 (97.45%), Query Frame = 0


Query: 1   MPLGKYYCDYCDKQFQDTPFARKRHLQSLSHQKAKALWFDSFKDFNQSFPHSFHFRPRIC 60
           MPLGKYYCDYCDKQFQDTPFARKRHLQSLSHQKAKALWFDSFKD NQ+FPHSFHFRPRIC
Sbjct: 1   MPLGKYYCDYCDKQFQDTPFARKRHLQSLSHQKAKALWFDSFKDSNQTFPHSFHFRPRIC 60

Query: 61  NRFLSTGFCQYGDSCKYFHP-NNNNDNTYNSSSYPMAGFPENYQPPNVPVNRFVDGNSSS 120
           NRFLSTGFCQYGDSCKYFHP NN+NDNT+NSSS+P+AGFPEN QPPNVP NRFVDGNSSS
Sbjct: 61  NRFLSTGFCQYGDSCKYFHPKNNHNDNTHNSSSHPIAGFPENNQPPNVPFNRFVDGNSSS 120

Query: 121 TGSLISDRLGTSWGNLPPSLMPPPDGGYPPLPFVDWG 157
           TGSL+SDRLGTSWGNLPPSLMPPP+GGYPPLPFVDWG
Sbjct: 121 TGSLVSDRLGTSWGNLPPSLMPPPEGGYPPLPFVDWG 157

[Close]

BLAST of CsaV3_1G037970 vs. ExPASy TrEMBL
Match: A0A6J1JFY8 (zinc finger CCCH domain-containing protein 3 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111486532 PE=4 SV=1)

HSP 1 Score: 250.0 bits (637), Expect = 6.6e-63
Identity = 123/156 (78.85%), Postives = 132/156 (84.62%), Query Frame = 0


Query: 1   MPLGKYYCDYCDKQFQDTPFARKRHLQSLSHQKAKALWFDSFKDFNQSFPHSFHFRPRIC 60
           MPLGKYYCDYC+KQFQDTPFARKRHLQSLSHQKAKALWFDSF+D NQ  P S  F  R+C
Sbjct: 1   MPLGKYYCDYCEKQFQDTPFARKRHLQSLSHQKAKALWFDSFRDSNQ--PFSDAFGTRVC 60

Query: 61  NRFLSTGFCQYGDSCKYFHPNNNNDNTYNSSSYPMAGFPENYQPPNVPVNRFVDGNSSST 120
           NRFL+TGFCQYGDSCKYFH  N   N   SSS P+AGFPEN Q PNVPVN+F++G SS T
Sbjct: 61  NRFLTTGFCQYGDSCKYFHSKN---NLQYSSSQPIAGFPENNQAPNVPVNQFMEG-SSLT 120

Query: 121 GSLISDRLGTSWGNLPPSLMPPPDGGYPPLPFVDWG 157
           GSL  DRL TSWGNLPPSLMPPP+GGYPPLPFVDWG
Sbjct: 121 GSL--DRLRTSWGNLPPSLMPPPEGGYPPLPFVDWG 148

[Close]

BLAST of CsaV3_1G037970 vs. ExPASy TrEMBL
Match: A0A6J1EU59 (zinc finger CCCH domain-containing protein 3 OS=Cucurbita moschata OX=3662 GN=LOC111437782 PE=4 SV=1)

HSP 1 Score: 250.0 bits (637), Expect = 6.6e-63
Identity = 120/156 (76.92%), Postives = 132/156 (84.62%), Query Frame = 0


Query: 1   MPLGKYYCDYCDKQFQDTPFARKRHLQSLSHQKAKALWFDSFKDFNQSFPHSFHFRPRIC 60
           MPLGKYYCDYC+KQFQDTPFARKRHLQSLSH KAKALWFDSF+D NQ   H+  F  R+C
Sbjct: 1   MPLGKYYCDYCEKQFQDTPFARKRHLQSLSHHKAKALWFDSFRDSNQPLSHA--FPTRLC 60

Query: 61  NRFLSTGFCQYGDSCKYFHPNNNNDNTYNSSSYPMAGFPENYQPPNVPVNRFVDGNSSST 120
           NRFL+TGFCQYGDSC YFH NN   N   SSS+P+AGFPEN Q PN+PVN+F++G SS T
Sbjct: 61  NRFLTTGFCQYGDSCNYFHSNN---NPQYSSSHPIAGFPENNQAPNIPVNQFMEG-SSLT 120

Query: 121 GSLISDRLGTSWGNLPPSLMPPPDGGYPPLPFVDWG 157
           GSL  DRL TSWGNLPPSLMPPP+GGYPPLPFVDWG
Sbjct: 121 GSL--DRLRTSWGNLPPSLMPPPEGGYPPLPFVDWG 148

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BLAST of CsaV3_1G037970 vs. TAIR 10
Match: AT5G26749.1 (C2H2 and C2HC zinc fingers superfamily protein )

HSP 1 Score: 154.1 bits (388), Expect = 9.5e-38
Identity = 78/157 (49.68%), Postives = 99/157 (63.06%), Query Frame = 0


Query: 1   MPLGKYYCDYCDKQFQDTPFARKRHLQSLSHQKAKALWFDSFKDFNQSFPHSFHFRPR-I 60
           MP GKYYCDYC+K+FQDT  ARKRHLQS  H +AKALW+ S    +   P   +F  + +
Sbjct: 1   MPSGKYYCDYCEKEFQDTQVARKRHLQSKPHLRAKALWYSS-SSSDLVNPQVSNFATKGL 60

Query: 61  CNRFLSTGFCQYGDSCKYFHPNNNNDNTYNSSSYPMAGFPENYQPPNVPVNRFVDGNSSS 120
           CNRF+++ FC +GDSC+YFHPNNN  +T         GF  N Q     +N+     S+ 
Sbjct: 61  CNRFITSNFCPFGDSCRYFHPNNNTGST---------GFTNNTQLRVDMLNQQHIQGSTL 120

Query: 121 TGSLISDRLGTSWGNLPPSLMPPPDGGYPPLPFVDWG 157
               +S R GT W +LPPSL PPP+ GYP LPF+DWG
Sbjct: 121 NRDFVSGRPGTGWFDLPPSLKPPPEQGYPQLPFIDWG 147

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BLAST of CsaV3_1G037970 vs. TAIR 10
Match: AT5G26749.2 (C2H2 and C2HC zinc fingers superfamily protein )

HSP 1 Score: 142.5 bits (358), Expect = 2.9e-34
Identity = 78/176 (44.32%), Postives = 99/176 (56.25%), Query Frame = 0


Query: 1   MPLGKYYCDYCDKQFQDTPFARKRHLQSLSHQKAKALWFDSFKDFNQSFPHSFHFRPR-I 60
           MP GKYYCDYC+K+FQDT  ARKRHLQS  H +AKALW+ S    +   P   +F  + +
Sbjct: 1   MPSGKYYCDYCEKEFQDTQVARKRHLQSKPHLRAKALWYSS-SSSDLVNPQVSNFATKGL 60

Query: 61  CNRFLST-------------------GFCQYGDSCKYFHPNNNNDNTYNSSSYPMAGFPE 120
           CNRF+++                    FC +GDSC+YFHPNNN  +T         GF  
Sbjct: 61  CNRFITSVRRIDFVSLCSSFLAISGCNFCPFGDSCRYFHPNNNTGST---------GFTN 120

Query: 121 NYQPPNVPVNRFVDGNSSSTGSLISDRLGTSWGNLPPSLMPPPDGGYPPLPFVDWG 157
           N Q     +N+     S+     +S R GT W +LPPSL PPP+ GYP LPF+DWG
Sbjct: 121 NTQLRVDMLNQQHIQGSTLNRDFVSGRPGTGWFDLPPSLKPPPEQGYPQLPFIDWG 166

The following BLAST results are available for this feature:

BLAST of CsaV3_1G037970 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004135569.1	3.1e-91	100.00	zinc finger CCCH domain-containing protein 3 [Cucumis sativus] >KGN65981.1 hypot...	[more]
XP_008450521.1	3.7e-84	92.99	PREDICTED: zinc finger CCCH domain-containing protein 3 [Cucumis melo] >KAA00509...	[more]
XP_038879279.1	6.8e-70	81.76	zinc finger CCCH domain-containing protein 3 [Benincasa hispida]	[more]
XP_022931617.1	1.4e-62	76.92	zinc finger CCCH domain-containing protein 3 [Cucurbita moschata] >XP_022931618....	[more]
XP_022989487.1	1.4e-62	78.85	zinc finger CCCH domain-containing protein 3 isoform X1 [Cucurbita maxima] >XP_0...	[more]

BLAST of CsaV3_1G037970 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q0JP11	1.1e-35	48.54	Zinc finger CCCH domain-containing protein 3 OS=Oryza sativa subsp. japonica OX=...	[more]
Q2TA39	1.2e-16	31.79	Zinc finger matrin-type protein 5 OS=Bos taurus OX=9913 GN=ZMAT5 PE=2 SV=1	[more]
Q9UDW3	2.9e-15	33.14	Zinc finger matrin-type protein 5 OS=Homo sapiens OX=9606 GN=ZMAT5 PE=1 SV=1	[more]
Q9CQR5	3.8e-15	30.64	Zinc finger matrin-type protein 5 OS=Mus musculus OX=10090 GN=Zmat5 PE=2 SV=1	[more]
Q6AXL8	2.7e-13	28.49	Zinc finger matrin-type protein 5 OS=Danio rerio OX=7955 GN=zmat5 PE=2 SV=1	[more]

BLAST of CsaV3_1G037970 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0M1B0	1.5e-91	100.00	C3H1-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G560650 P...	[more]
A0A5D3CFN3	1.8e-84	92.99	Zinc finger CCCH domain-containing protein 3 OS=Cucumis melo var. makuwa OX=1194...	[more]
A0A1S3BQ25	1.8e-84	92.99	zinc finger CCCH domain-containing protein 3 OS=Cucumis melo OX=3656 GN=LOC10349...	[more]
A0A6J1JFY8	6.6e-63	78.85	zinc finger CCCH domain-containing protein 3 isoform X1 OS=Cucurbita maxima OX=3...	[more]
A0A6J1EU59	6.6e-63	76.92	zinc finger CCCH domain-containing protein 3 OS=Cucurbita moschata OX=3662 GN=LO...	[more]

BLAST of CsaV3_1G037970 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G26749.1	9.5e-38	49.68	C2H2 and C2HC zinc fingers superfamily protein	[more]
AT5G26749.2	2.9e-34	44.32	C2H2 and C2HC zinc fingers superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003604	Matrin/U1-C-like, C2H2-type zinc finger	SMART	SM00451	ZnF_U1_5	coord: 3..38 e-value: 3.6E-5 score: 33.2
IPR000571	Zinc finger, CCCH-type	SMART	SM00356	c3hfinal6	coord: 54..81 e-value: 2.2E-4 score: 30.6
IPR000571	Zinc finger, CCCH-type	PFAM	PF00642	zf-CCCH	coord: 56..80 e-value: 2.7E-7 score: 30.3
IPR000571	Zinc finger, CCCH-type	PROSITE	PS50103	ZF_C3H1	coord: 55..82 score: 14.004407
None	No IPR available	GENE3D	3.30.160.60	Classic Zinc Finger	coord: 3..49 e-value: 4.0E-9 score: 38.4
None	No IPR available	GENE3D	4.10.1000.10		coord: 50..116 e-value: 2.1E-6 score: 29.7
None	No IPR available	PANTHER	PTHR16465	NUCLEASE-RELATED	coord: 1..156
IPR013085	U1-C, C2H2-type zinc finger	PFAM	PF06220	zf-U1	coord: 5..36 e-value: 1.6E-9 score: 37.4
IPR036236	Zinc finger C2H2 superfamily	SUPERFAMILY	57667	beta-beta-alpha zinc fingers	coord: 4..49
IPR036855	Zinc finger, CCCH-type superfamily	SUPERFAMILY	90229	CCCH zinc finger	coord: 52..82

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_1G037970.1	CsaV3_1G037970.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding