CsaV3_1G037420 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_1G037420
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description50S ribosomal protein L33-like
Locationchr1: 23331332 .. 23333047 (+)
RNA-Seq ExpressionCsaV3_1G037420
SyntenyCsaV3_1G037420
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
TAAACCCTAAAAATCAAACCTCATATTCTTCACATTTCTTCCACTAATTCCCTCCATCTACCCTTGCCGCCGATCAGCTGTGCCCCTGCCTTCCCGCCGCCGTCGCCGCCGGTTAGTTTCAACCCTTTATTTTTTTCACTCTCTTTTGAATGTATATGTGTACGTGCGTGAAAATATAGAGAACATGAAGTATCCTCGATGTATCCGTATCTCGTAACTGTATTGCTTCATAGTTGGTTCATAATGTGCCTCTCGCTTATTGGTTTTATTGTAAGAAATCACTCTAATAGGTTTCCACCTGTTTGATCTGCTAAAAAGGGGTGGCTTATTTGTTGTTTTCCTGCTCCTAATAATTGGGTTGAAATATGAATTTAATATCTGAGTTTTCAGCTTTGTGACTATTTGTTACATGAACTTTAAAATATTACCAGTAGGTTCATGAACTTTTAATGGAAGTGTTCAATAAATCTCTGAACGGCTGATGGGTGTTAATGTTCAATTTTGTGTCTAGGTCTCATAGTTTTCAATTTTGATCGAAATATTTAACTTCCTTTAAATCTAGGGACGTGCTAAACACAATTTTGAAAGTTTAGGGAAATAAAATTCAATTCTATATCAGCTAGAATGGTTCATTTTAAAATGTTTAAATGTGTCAAAGACTTACTGAACACATAATTGAATCCATTAGACACTTTTATAGTTTAGGGATCTATTAGACACAAAATTGAAAATTCAAGTACCCATTATACACATGTTGTATAAACAAACATGAAAGAGATTGGTGATTTAGCTATATTTGAGTGAGAAAACCTGTGTTAAAATCCATATAAGTTCATTTAACTTGGCATCTGCACAGTTTCGTTGCAAATAGCTGCTTGAATATGTTTCCGTTTCCTCGGATTTCAATGTATTCGTATTCTTTCAGGGACGCTCTGTTGTTTCATCTTGTATTTGGGCTAATCTTTGGATATTTCATTTATCAATGAAATGGTTTCTTGTGTATATATGTTTTCTTTTCCTCGTTTTCTTCATGCTAAGTCTATAGTATAGCATACGAAGAACTAGCTTTCACAATGACTGGATGAGTTAATTTTGTTTTTCTCTTTTTGGTGTTAGGAAATGGGTGACAAGAAAAAGAAAGCTACTATGTTCATCCGACTTGTATCAGCTGCTGGGACTGGATTCTTCTATGTTAAAAGAAAGCCAACCAAAATTACAGAGAAGCTCGAGTTCCGAAAATACGATCCTCGGGTCAATCGACATGTTTTGTTTACGGAAGCGAAAATGAAATGAAAGAAGAGAGGAATAAAAATCAGTTATCCTCTCAACCTGGACCTATTCTTCTTTTGGTCCATAGGTTTTGAAGCTTTGCAATTAGTCTTCTGCTGCTTCTCCATTTTAGACTGATGTTTCATATTTGCTAGTCTTTTCCCTTGGCTCATCTTCAGCAGTATGTTTGTACATCAAATTCTATGGCCAGGAATTGTTTGCCGCTTGATCTCTTGCGGTCAAATGTGTTGAGATAAATTATAAGATATAGTTTTGAGTTATTAAGCTTGTTGATTCATGATTGCATCTTAGCATTGCAAGCATGTTTGGTGGCTCTTAATGGAATTGGATCTAATGTAATCTAATCCAAAATTCATTTTTCGATTGGTGTTTTGAATACAAAACTTATTCCACAGGATCTTATGCAACACTATTTTTCACTGTTTT

mRNA sequence

ATGGGTGACAAGAAAAAGAAAGCTACTATGTTCATCCGACTTGTATCAGCTGCTGGGACTGGATTCTTCTATGTTAAAAGAAAGCCAACCAAAATTACAGAGAAGCTCGAGTTCCGAAAATACGATCCTCGGGTCAATCGACATGTTTTGTTTACGGAAGCGAAAATGAAATGA

Coding sequence (CDS)

ATGGGTGACAAGAAAAAGAAAGCTACTATGTTCATCCGACTTGTATCAGCTGCTGGGACTGGATTCTTCTATGTTAAAAGAAAGCCAACCAAAATTACAGAGAAGCTCGAGTTCCGAAAATACGATCCTCGGGTCAATCGACATGTTTTGTTTACGGAAGCGAAAATGAAATGA

Protein sequence

MGDKKKKATMFIRLVSAAGTGFFYVKRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK*
Homology
BLAST of CsaV3_1G037420 vs. NCBI nr
Match: KAG6575038.1 (hypothetical protein SDJN03_25677, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 117.5 bits (293), Expect = 3.9e-23
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 0

Query: 1  MGDKKKKATMFIRLVSAAGTGFFYVKRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK 58
          MGDKKKKATMFIRLVSAAGTGFFYVKRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK
Sbjct: 35 MGDKKKKATMFIRLVSAAGTGFFYVKRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK 91

BLAST of CsaV3_1G037420 vs. NCBI nr
Match: XP_004135554.1 (uncharacterized protein LOC101212288 [Cucumis sativus] >XP_008445095.1 PREDICTED: 50S ribosomal protein L33-like [Cucumis melo] >XP_022138424.1 uncharacterized protein LOC111009599 [Momordica charantia] >XP_022958839.1 uncharacterized protein LOC111459991 [Cucurbita moschata] >XP_023006427.1 uncharacterized protein LOC111499157 [Cucurbita maxima] >XP_023548396.1 uncharacterized protein LOC111807061 [Cucurbita pepo subsp. pepo] >XP_038894807.1 50S ribosomal protein L33-like [Benincasa hispida] >KGN65933.1 hypothetical protein Csa_023249 [Cucumis sativus])

HSP 1 Score: 117.5 bits (293), Expect = 3.9e-23
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 0

Query: 1  MGDKKKKATMFIRLVSAAGTGFFYVKRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK 58
          MGDKKKKATMFIRLVSAAGTGFFYVKRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK
Sbjct: 1  MGDKKKKATMFIRLVSAAGTGFFYVKRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK 57

BLAST of CsaV3_1G037420 vs. NCBI nr
Match: KAG7013613.1 (rpmG, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 117.5 bits (293), Expect = 3.9e-23
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 0

Query: 1  MGDKKKKATMFIRLVSAAGTGFFYVKRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK 58
          MGDKKKKATMFIRLVSAAGTGFFYVKRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK
Sbjct: 9  MGDKKKKATMFIRLVSAAGTGFFYVKRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK 65

BLAST of CsaV3_1G037420 vs. NCBI nr
Match: XP_022137876.1 (uncharacterized protein LOC111009198 [Momordica charantia])

HSP 1 Score: 116.7 bits (291), Expect = 6.7e-23
Identity = 56/57 (98.25%), Postives = 57/57 (100.00%), Query Frame = 0

Query: 1  MGDKKKKATMFIRLVSAAGTGFFYVKRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK 58
          MGDKKKKATMFIRLVSAAGTGFFYVKRKPTK+TEKLEFRKYDPRVNRHVLFTEAKMK
Sbjct: 1  MGDKKKKATMFIRLVSAAGTGFFYVKRKPTKLTEKLEFRKYDPRVNRHVLFTEAKMK 57

BLAST of CsaV3_1G037420 vs. NCBI nr
Match: XP_007223555.1 (uncharacterized protein LOC18791548 [Prunus persica] >XP_008223087.1 PREDICTED: 50S ribosomal protein L33 [Prunus mume] >XP_021808617.1 uncharacterized protein LOC110752307 [Prunus avium] >XP_034201389.1 50S ribosomal protein L33 [Prunus dulcis] >ONI28500.1 hypothetical protein PRUPE_1G144200 [Prunus persica] >ONI28501.1 hypothetical protein PRUPE_1G144200 [Prunus persica])

HSP 1 Score: 114.0 bits (284), Expect = 4.3e-22
Identity = 54/57 (94.74%), Postives = 57/57 (100.00%), Query Frame = 0

Query: 1  MGDKKKKATMFIRLVSAAGTGFFYVKRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK 58
          MGDKKKKAT+FIRLVSAAGTGFFYVKRKPTK+TEKLEFRK+DPRVNRHVLFTEAKMK
Sbjct: 1  MGDKKKKATVFIRLVSAAGTGFFYVKRKPTKVTEKLEFRKFDPRVNRHVLFTEAKMK 57

BLAST of CsaV3_1G037420 vs. ExPASy Swiss-Prot
Match: Q2W1A2 (50S ribosomal protein L33 OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) OX=342108 GN=rpmG PE=3 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 1.9e-12
Identity = 36/53 (67.92%), Postives = 42/53 (79.25%), Query Frame = 0

Query: 6  KKATMFIRLVSAAGTGFFYV-KRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK 58
          K AT+ I+L+S AGTGFFYV K+ P K TEKLEFRKYDP V +HV F EAK+K
Sbjct: 3  KPATILIKLLSTAGTGFFYVAKKNPRKTTEKLEFRKYDPVVRKHVQFKEAKIK 55

BLAST of CsaV3_1G037420 vs. ExPASy Swiss-Prot
Match: B6IN38 (50S ribosomal protein L33 OS=Rhodospirillum centenum (strain ATCC 51521 / SW) OX=414684 GN=rpmG PE=3 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 3.2e-12
Identity = 35/53 (66.04%), Postives = 43/53 (81.13%), Query Frame = 0

Query: 6  KKATMFIRLVSAAGTGFFYVKRK-PTKITEKLEFRKYDPRVNRHVLFTEAKMK 58
          K+ T+ I+LVS+A TGFFYVK+K P K TEKLEF+KYDP   +HV+F EAKMK
Sbjct: 3  KQNTVLIKLVSSADTGFFYVKKKNPRKTTEKLEFKKYDPVARKHVVFKEAKMK 55

BLAST of CsaV3_1G037420 vs. ExPASy Swiss-Prot
Match: B3CRY6 (50S ribosomal protein L33 OS=Orientia tsutsugamushi (strain Ikeda) OX=334380 GN=rpmG PE=3 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 3.6e-11
Identity = 33/54 (61.11%), Postives = 42/54 (77.78%), Query Frame = 0

Query: 5  KKKATMFIRLVSAAGTGFFYVK-RKPTKITEKLEFRKYDPRVNRHVLFTEAKMK 58
          +KK  + ++LVS+AGTG F+VK R P   TEKL FRKYDP+V +HV FTEAK+K
Sbjct: 3  RKKKKVLVKLVSSAGTGVFWVKQRNPKTQTEKLSFRKYDPKVRKHVQFTEAKIK 56

BLAST of CsaV3_1G037420 vs. ExPASy Swiss-Prot
Match: A8GY80 (50S ribosomal protein L33 OS=Rickettsia bellii (strain OSU 85-389) OX=391896 GN=rpmG PE=3 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 3.6e-11
Identity = 34/54 (62.96%), Postives = 39/54 (72.22%), Query Frame = 0

Query: 5  KKKATMFIRLVSAAGTGFFYV-KRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK 58
          KK   + +RLVS AGTGFF V KR P   TEKL FRKYDP+V +HVLF E K+K
Sbjct: 3  KKNKNILVRLVSTAGTGFFLVKKRNPKTQTEKLSFRKYDPKVRKHVLFKEEKIK 56

BLAST of CsaV3_1G037420 vs. ExPASy Swiss-Prot
Match: Q1RGQ4 (50S ribosomal protein L33 OS=Rickettsia bellii (strain RML369-C) OX=336407 GN=rpmG PE=3 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 3.6e-11
Identity = 34/54 (62.96%), Postives = 39/54 (72.22%), Query Frame = 0

Query: 5  KKKATMFIRLVSAAGTGFFYV-KRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK 58
          KK   + +RLVS AGTGFF V KR P   TEKL FRKYDP+V +HVLF E K+K
Sbjct: 3  KKNKNILVRLVSTAGTGFFLVKKRNPKTQTEKLSFRKYDPKVRKHVLFKEEKIK 56

BLAST of CsaV3_1G037420 vs. ExPASy TrEMBL
Match: A0A6J1KVU2 (uncharacterized protein LOC111499157 OS=Cucurbita maxima OX=3661 GN=LOC111499157 PE=3 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 1.9e-23
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 0

Query: 1  MGDKKKKATMFIRLVSAAGTGFFYVKRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK 58
          MGDKKKKATMFIRLVSAAGTGFFYVKRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK
Sbjct: 1  MGDKKKKATMFIRLVSAAGTGFFYVKRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK 57

BLAST of CsaV3_1G037420 vs. ExPASy TrEMBL
Match: A0A0A0LVW9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G538800 PE=3 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 1.9e-23
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 0

Query: 1  MGDKKKKATMFIRLVSAAGTGFFYVKRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK 58
          MGDKKKKATMFIRLVSAAGTGFFYVKRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK
Sbjct: 1  MGDKKKKATMFIRLVSAAGTGFFYVKRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK 57

BLAST of CsaV3_1G037420 vs. ExPASy TrEMBL
Match: A0A6J1CA39 (uncharacterized protein LOC111009599 OS=Momordica charantia OX=3673 GN=LOC111009599 PE=3 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 1.9e-23
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 0

Query: 1  MGDKKKKATMFIRLVSAAGTGFFYVKRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK 58
          MGDKKKKATMFIRLVSAAGTGFFYVKRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK
Sbjct: 1  MGDKKKKATMFIRLVSAAGTGFFYVKRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK 57

BLAST of CsaV3_1G037420 vs. ExPASy TrEMBL
Match: A0A6J1H6A1 (uncharacterized protein LOC111459991 OS=Cucurbita moschata OX=3662 GN=LOC111459991 PE=3 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 1.9e-23
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 0

Query: 1  MGDKKKKATMFIRLVSAAGTGFFYVKRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK 58
          MGDKKKKATMFIRLVSAAGTGFFYVKRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK
Sbjct: 1  MGDKKKKATMFIRLVSAAGTGFFYVKRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK 57

BLAST of CsaV3_1G037420 vs. ExPASy TrEMBL
Match: A0A1S3BBV4 (50S ribosomal protein L33-like OS=Cucumis melo OX=3656 GN=LOC103488236 PE=3 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 1.9e-23
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 0

Query: 1  MGDKKKKATMFIRLVSAAGTGFFYVKRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK 58
          MGDKKKKATMFIRLVSAAGTGFFYVKRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK
Sbjct: 1  MGDKKKKATMFIRLVSAAGTGFFYVKRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK 57

BLAST of CsaV3_1G037420 vs. TAIR 10
Match: AT3G06320.1 (Ribosomal protein L33 family protein )

HSP 1 Score: 99.4 bits (246), Expect = 1.0e-21
Identity = 50/58 (86.21%), Postives = 52/58 (89.66%), Query Frame = 0

Query: 1  MGDKKKKATMFIRLVSAAGTGFFYVKRKPTK-ITEKLEFRKYDPRVNRHVLFTEAKMK 58
          MGDK+KK  MFIRLVSAAGTGFFYVKRK TK + EKLEFRKYDPRVNRHVLFTE KMK
Sbjct: 1  MGDKRKKTFMFIRLVSAAGTGFFYVKRKSTKGLLEKLEFRKYDPRVNRHVLFTEQKMK 58

BLAST of CsaV3_1G037420 vs. TAIR 10
Match: AT5G18790.1 (Ribosomal protein L33 family protein )

HSP 1 Score: 99.4 bits (246), Expect = 1.0e-21
Identity = 50/58 (86.21%), Postives = 52/58 (89.66%), Query Frame = 0

Query: 1  MGDKKKKATMFIRLVSAAGTGFFYVKRKPTK-ITEKLEFRKYDPRVNRHVLFTEAKMK 58
          MGDK+KK  MFIRLVSAAGTGFFYVKRK TK + EKLEFRKYDPRVNRHVLFTE KMK
Sbjct: 1  MGDKRKKTFMFIRLVSAAGTGFFYVKRKSTKGLLEKLEFRKYDPRVNRHVLFTEQKMK 58

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG6575038.13.9e-23100.00hypothetical protein SDJN03_25677, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_004135554.13.9e-23100.00uncharacterized protein LOC101212288 [Cucumis sativus] >XP_008445095.1 PREDICTED... [more]
KAG7013613.13.9e-23100.00rpmG, partial [Cucurbita argyrosperma subsp. argyrosperma][more]
XP_022137876.16.7e-2398.25uncharacterized protein LOC111009198 [Momordica charantia][more]
XP_007223555.14.3e-2294.74uncharacterized protein LOC18791548 [Prunus persica] >XP_008223087.1 PREDICTED: ... [more]
Match NameE-valueIdentityDescription
Q2W1A21.9e-1267.9250S ribosomal protein L33 OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 70... [more]
B6IN383.2e-1266.0450S ribosomal protein L33 OS=Rhodospirillum centenum (strain ATCC 51521 / SW) OX... [more]
B3CRY63.6e-1161.1150S ribosomal protein L33 OS=Orientia tsutsugamushi (strain Ikeda) OX=334380 GN=... [more]
A8GY803.6e-1162.9650S ribosomal protein L33 OS=Rickettsia bellii (strain OSU 85-389) OX=391896 GN=... [more]
Q1RGQ43.6e-1162.9650S ribosomal protein L33 OS=Rickettsia bellii (strain RML369-C) OX=336407 GN=rp... [more]
Match NameE-valueIdentityDescription
A0A6J1KVU21.9e-23100.00uncharacterized protein LOC111499157 OS=Cucurbita maxima OX=3661 GN=LOC111499157... [more]
A0A0A0LVW91.9e-23100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G538800 PE=3 SV=1[more]
A0A6J1CA391.9e-23100.00uncharacterized protein LOC111009599 OS=Momordica charantia OX=3673 GN=LOC111009... [more]
A0A6J1H6A11.9e-23100.00uncharacterized protein LOC111459991 OS=Cucurbita moschata OX=3662 GN=LOC1114599... [more]
A0A1S3BBV41.9e-23100.0050S ribosomal protein L33-like OS=Cucumis melo OX=3656 GN=LOC103488236 PE=3 SV=1[more]
Match NameE-valueIdentityDescription
AT3G06320.11.0e-2186.21Ribosomal protein L33 family protein [more]
AT5G18790.11.0e-2186.21Ribosomal protein L33 family protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001705Ribosomal protein L33PFAMPF00471Ribosomal_L33coord: 12..55
e-value: 8.8E-11
score: 42.1
IPR001705Ribosomal protein L33TIGRFAMTIGR01023TIGR01023coord: 4..57
e-value: 7.8E-18
score: 62.6
IPR038584Ribosomal protein L33 superfamilyGENE3D2.20.28.120Ribosomal protein L33coord: 3..57
e-value: 3.7E-24
score: 86.3
NoneNo IPR availablePANTHERPTHR1523854S RIBOSOMAL PROTEIN L39, MITOCHONDRIALcoord: 1..57
NoneNo IPR availablePANTHERPTHR15238:SF154S RIBOSOMAL PROTEIN L39, MITOCHONDRIALcoord: 1..57
IPR011332Zinc-binding ribosomal proteinSUPERFAMILY57829Zn-binding ribosomal proteinscoord: 4..55

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_1G037420.1CsaV3_1G037420.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome