CsaV3_1G036920 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_1G036920
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr1: 22831139 .. 22831359 (-)
RNA-Seq Expression	CsaV3_1G036920
Synteny	CsaV3_1G036920

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCGAGTTGTTTGGCGACATTGGTAGTCCAACCAAGAAAGATATCGAAGATGATTCAAAGTGGGAGACAACCATGACAGCGAGCTGTGGGAGCTTAAATGGCTTCTTTGAAAGAGGATTTGATTTCGAGAGAGGAAGAAGCTTGAAAAAGGTGAAGGATGAGGTGATAAGGCACGACATAGTTTTCAAAGGCCCGTGGGAGGCTATGGGAGGAGCTTGA

mRNA sequence

GCCGAGTTGTTTGGCGACATTGGTAGTCCAACCAAGAAAGATATCGAAGATGATTCAAAGTGGGAGACAACCATGACAGCGAGCTGTGGGAGCTTAAATGGCTTCTTTGAAAGAGGATTTGATTTCGAGAGAGGAAGAAGCTTGAAAAAGGTGAAGGATGAGGTGATAAGGCACGACATAGTTTTCAAAGGCCCGTGGGAGGCTATGGGAGGAGCTTGA

Coding sequence (CDS)

GCCGAGTTGTTTGGCGACATTGGTAGTCCAACCAAGAAAGATATCGAAGATGATTCAAAGTGGGAGACAACCATGACAGCGAGCTGTGGGAGCTTAAATGGCTTCTTTGAAAGAGGATTTGATTTCGAGAGAGGAAGAAGCTTGAAAAAGGTGAAGGATGAGGTGATAAGGCACGACATAGTTTTCAAAGGCCCGTGGGAGGCTATGGGAGGAGCTTGA

Protein sequence

AELFGDIGSPTKKDIEDDSKWETTMTASCGSLNGFFERGFDFERGRSLKKVKDEVIRHDIVFKGPWEAMGGA*

Homology

[Close]

BLAST of CsaV3_1G036920 vs. NCBI nr
Match: KAE8653298.1 (hypothetical protein Csa_024005, partial [Cucumis sativus])

HSP 1 Score: 156.8 bits (395), Expect = 7.3e-35
Identity = 72/72 (100.00%), Postives = 72/72 (100.00%), Query Frame = 0


Query: 1  AELFGDIGSPTKKDIEDDSKWETTMTASCGSLNGFFERGFDFERGRSLKKVKDEVIRHDI 60
          AELFGDIGSPTKKDIEDDSKWETTMTASCGSLNGFFERGFDFERGRSLKKVKDEVIRHDI
Sbjct: 1  AELFGDIGSPTKKDIEDDSKWETTMTASCGSLNGFFERGFDFERGRSLKKVKDEVIRHDI 60

Query: 61 VFKGPWEAMGGA 73
          VFKGPWEAMGGA
Sbjct: 61 VFKGPWEAMGGA 72

[Close]

BLAST of CsaV3_1G036920 vs. NCBI nr
Match: KAE8650824.1 (hypothetical protein Csa_017416 [Cucumis sativus])

HSP 1 Score: 83.2 bits (204), Expect = 1.0e-12
Identity = 37/48 (77.08%), Postives = 42/48 (87.50%), Query Frame = 0


Query: 25 MTASCGSLNGFFERGFDFERGRSLKKVKDEVIRHDIVFKGPWEAMGGA 73
          M ASC SLNGF+ERGFDFE+GRSLKK K+EVIR+DIVFKG W+ M GA
Sbjct: 1  MIASCESLNGFYERGFDFEKGRSLKKAKNEVIRNDIVFKGRWKTMRGA 48

[Close]

BLAST of CsaV3_1G036920 vs. ExPASy TrEMBL
Match: A0A0A0LXW0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G537340 PE=4 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 3.5e-35
Identity = 72/72 (100.00%), Postives = 72/72 (100.00%), Query Frame = 0


Query: 1   AELFGDIGSPTKKDIEDDSKWETTMTASCGSLNGFFERGFDFERGRSLKKVKDEVIRHDI 60
           AELFGDIGSPTKKDIEDDSKWETTMTASCGSLNGFFERGFDFERGRSLKKVKDEVIRHDI
Sbjct: 81  AELFGDIGSPTKKDIEDDSKWETTMTASCGSLNGFFERGFDFERGRSLKKVKDEVIRHDI 140

Query: 61  VFKGPWEAMGGA 73
           VFKGPWEAMGGA
Sbjct: 141 VFKGPWEAMGGA 152

[Close]

BLAST of CsaV3_1G036920 vs. ExPASy TrEMBL
Match: A0A0A0LF01 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G800650 PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 1.0e-21
Identity = 52/62 (83.87%), Postives = 56/62 (90.32%), Query Frame = 0


Query: 2  ELFGDIGSPTKKDIEDDSKWETTMTASCGSLNGFFERGFDFERGRSLKKVKDEVIRHDIV 61
          + FG IGSPTKKDIEDD++WETTM ASC SLN FFERGFDFERGRSLKK KDEVIR+DIV
Sbjct: 21 KFFGHIGSPTKKDIEDDTEWETTMIASCESLNDFFERGFDFERGRSLKKAKDEVIRNDIV 80

Query: 62 FK 64
          FK
Sbjct: 81 FK 82

The following BLAST results are available for this feature:

BLAST of CsaV3_1G036920 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8653298.1	7.3e-35	100.00	hypothetical protein Csa_024005, partial [Cucumis sativus]	[more]
KAE8650824.1	1.0e-12	77.08	hypothetical protein Csa_017416 [Cucumis sativus]	[more]

BLAST of CsaV3_1G036920 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_1G036920 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LXW0	3.5e-35	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G537340 PE=4 SV=1	[more]
A0A0A0LF01	1.0e-21	83.87	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G800650 PE=4 SV=1	[more]

BLAST of CsaV3_1G036920 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_1G036920.1	CsaV3_1G036920.1	mRNA