CsaV3_1G036700 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_1G036700
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	PseudoU_synth_1 domain-containing protein
Location	chr1: 22524354 .. 22535677 (+)
RNA-Seq Expression	CsaV3_1G036700
Synteny	CsaV3_1G036700

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GCATCCTTCCTAAACAAACCTAATTTTGTTAGCCCCTCGAATTCCCGTCCCCCAAGAATAGGGTGCAATGTCAGTCTCTTCTTTGCGACTCCCACTTTCCCCATGGATAACCAAAGCTTCATCTTCATGTTTTCGTTTCCCCGACCCTGTTTTCGTTTCCCGGACTCCTCCTCTTAGGCCTGCACTGCTCCACTTTTTCTCATCTTCTACTGCCTCCACCGATGCTTTTTCCACTCGGTGCGCTCCGGATCAGCTCCGGAAATGGCAAGCTTTCCGTAAGAAAAAGGTCGTTTTGCGAATCGGCTATGTCGGGACTGATTATCGAGGTCCTCATTTCACGTTACTCTCTGTTTCTCTTGACCATCCTCTTGTGAATCCTTCACCATTTCTCATTAACTCACTAGTTTTGACAATTCAGGGCTACAAATGCAACGCAACCAACTGTCACATCCAAGTAAGTTTTTCTCTACATTATATCAGGAAAATTCCTATCGATGGATTGACCATGGCATCCCCTGAATATTCTGTTGCTGTGTTATGATTTAATACTACTCGCACTTTGAATGTGATTGTGGTTTGCTCTACTTACTTATCCAATGTAGGGTTCAATTCAACAACTAATTTATTTCACAATGACCAACTGAAACTATTGAGATTCTGTAAGCAATTAACTACTTTATAGCTGGTTCATTACATTTTAACTAATTAACCATGTAATTACTTAGCATTCCCCTGGCAAGCTCAGTTTAGGGGAGGAATCTCAAACAGTAGTGGCTACTGAAAGTGGGTTTGTGAACATATCGTGATGGAACATTTTGAATCGTTTATGACCCAAGTGGAACTTTCTCAAGCTCATTGCATTCGATTCAAGACTGTTGAACTGAATTTGCACTTAAAGGCACCTTTGAAGAACCACAAAATATGTAACGCATCCTTTTAACAAATCTCTAGTCTCTAGCTCTAAAAGGGGTGTTTGGAGATTTCGGCTTGTGATTGGGTTTTATAAACTCACGAATACTTTGGCTTTACATTATGTAATATGAGTTTGGGTTTTTGTAGCCTTCCTGCAAGCATCCAATCCCATGCAAAAATCGTGGAATTAATTAACTTTGCAGGCAGTTCTTCAATCAAAGTTGACTCTTGGTGCTCACCCTGCTGCATAACAAGTGAAAGAAATTTCATTTTTCTAAAATAGTTTTACATTGGTAAACTGCCTTTGTTTTTGTTCTTCAAGTTGATTTTTGTACTGTGCCACTTTTACATAACACCTCATAGTGAAAGCCTTTTCCAAAGTACTCCACAAGATGTGAAAATATTCACTACTCTAGTTCTAATGCTTCCTATCATTGAGGCAAATAACCATGAATATCATTTTTTTTCCTTAGCTCCAAAACCAGGAATCTGGTTTTTTACTTGACTTGTCAGCATTTTTAAGTTTTTGAAGGTGGGTGTTACATCTTCGATTGTGTATCCTTCTTGGGGGGAGGAAGAGGATCTTTGACCATTTTGTTTGGGATTGTGAGTTTGTTACCTCTTAGTTGAACAGGTTCTTTAGAACCTTTGGGCTTGTGCTTTCTTGTATTAGAGGTTGTTGTTCAATGTTTTAGGAGTTGCTCTCAAATCCTCCTTTTCGTGAAAAACGACGTTCTTTGGCCGTTTGTTTTTTAATATTACTATTATTATTGGTTCGTTGTGGGGCATTTGGCTTGATAGGAATTGTAGAACGTTTCATAGTATCAAGCAGTCTATCTTTAGGATGTGATTAGGTTTAATTCATCCCTGTGAGCAATTATTAATACAATTTTTTTGTAATTATTAGCTCAGTGTAATTCTTCTGGATTGGAACCCCCCTTTTGTAGTTTGTCACGAGAGCTGTCATTTTTTACTTGTCTTTTGTATTGCCCTTGTATATCTTTTTTTTTTTTTAAATGGAGACAAAACTTCTTTATTAATATGAGCTCAAAGTACAAAAGAGTTATACAAAGAGAGCAATAAAGAAGTTGTAATCAAGGGAGTCCTAGAGGGATCCAGGTACACCTAGACATCTCAACTAGGTTGGCACTCTCATAGCGCCAATGATCATATCTCGTGTAAAAGCATAGAAACCAAACAAAGATACAATACTAAAGCATCCAACTTATTACAATGGTCCAGAAAACAATACAGGACCAGAAAAAACAGCATGAAACAAAAGGGAAGGCCCAAAAATACAATCTCAAAATTAAAGGCTAAAACAGAGGCAATCCTCCAAAGCTTCAAAATGCAGAAAAGGGCTTCAGACTGTGTAATCTGCAAACAATGGATCTAATGCAGCATCGAATAGGCAGGCTAAGTAAGAAAAGCAGCCCAATTGAGGTGAATGTCTTGAATGGAATGATTAACGGACTCCTTTTTTACGGAACACCAAGCTGCAGCTGGGATCTACTGCACACATAATTTTTGCCCTTGGTCTTACTTTATCATGGAAGATACGTTGATTTCGCTCGAACCATAATTCTGTGAGTAAAGCTTTTGACAAAATTTCCAATATGATACGAGATTTTTTGGGTAAAATCGGACCCGACAAAAATTGAACTACACTAGCGCTTATGGAATGATCAAATACCCAAACTAAATTGAACAAGGAGAAAATCCTTACCCAGCAGAAGGAAGAGACGAGGCAGTTCAACAAAATACGAGGAAGATTCTCACTAGCCTTCAAACATAGAGGACAAATCGAAGGAGAGAGGCTTTTATTGGGGGATTTCTTTTGCAAAATTTCTAAATTATTGAGGGACCCGAAGACCATAATTCAAATAAAAATGTTAATTCTCCAGGGGCTGCCTAATTTTCAAATTGCTGAAGAAAAGAAATGTCTATCCATCGGGGAGGCAGATTTTAAGTTGGCTGAAAGAGACTTAACGGAAAATTGGCCTTGGGATCAATGGACCATGATCTATAATTGTTGGAAGTAACCACTTCTTCAGTTGAGAGGAGGGATAGTAGTGATTGAAATTCAGCAATTTCATCATCCTTCAAACATCTTCTAAAGGCCAATAACCAAGATGAAGTGTCATGGTCCCAATGTGCTGCTACTGAACCGGTGGGCAAAAGGGCAATTCTAAAGAGCCTATAAAATTACTCCTTGATAGGGACATTACCAACCCAAGGATCTATCCAAAATCTGATTCTATGGCCATTACAAAAATTAAAGGAGGCTAACGAGTCAATCGACCTCCAAACTCTAGCAATATTAACCCAAGGACTCCTTAGGCTGTTATTGGACTTCCCTTTAGTGAACCAATCAAAACCCTCCTTACCGTGGATGCTTCTTATTATTTGCCTCCAAAGAGCTAACTCTTCTTTTGAGAATCTCCAACCCCATTTATCGAGCAAAGCAATGTTATGGATTTTAATTCCTCCTAGGCCGAGTCCCTCATCTTTTAGAGGAGATGAGACCTTGTTCCATTTAACAAGGTGGTTGATTTTGCTACCAGCATGACCTTTCCAAAAGAATTTTGGCATGATTCTCTCCAAAGTGACAGTCACACTTTTAGGTATTGAAAATAAAGATAGGTAATACTTGGGAAGAGTAACCAGAACTGAGTTGCACAAGGTATGTCTTCCGCCTCTAGACATGTTATATCTTTTCCACCTATCTAGTTTCCTTTTGAATTCAATCGATGACTGGTTGCCAGAACACCTTTTGCTAAGGGTAGCCTCCCAAAGGGAGACTTAAATATATAAGCGGTAACTTTTCTGCCTTGCACCCTAGTAGATTTTCTGTTTGAATCAAATCATCCTCTCCCACATTAACACCGCTAAGGGCTGATTTCTCCCAGTTTACTTTCTGCCCCGAACATCATTTGAATAACCTAATGGCATCCTTAAGCTTAAGAAGCATCTTCACATCATACTTACAAAATAGGAGAGTGTCATCGGCAAATTGAAGCAAAGGGAGGTGGATCATATCTTTGCCAACAGGGAAACCTTCAAACTGGTTGTCACTACAAAGCTTATTTATGATTTCTCCTAGAACCTCACTTACTAAGAGAAATAAAAAGGGGGAGATGATTTCTCCTAGAACCTCACTTACTAAGAGAAATAAAAAGGGGGAGATGATTTCTCCTAGAACCTCACTTACTAAGAGAAATAAAAAGGGGGAGAGGGGTCCCCTTGGCGGATACCTCGAGATGCTGTTCTTTGGCCTCTTGGCTTACCATTAATGAAGACTGAAAATTTTGGACTCCTTAGGCAGCCATTATCTATGAAATCCACGTGGAGCTAAACTTTTTAAGAGATAAAATCTTTTCTAGAAAGTTCCAATTCACCCTATCAAAGCCTTTTTCAAGATCAAATTTTAAAATGCAGCCTTTTTCCTTTTTGCTCTATAATATTCCACTGCCTCGTTAGCAATTAATATTGTGTCAAGAATCTGCCTACCTTCGATAAAAGCACTTTGGGTAACTTATAATTGCATCCATAACGTGTTTTAGTCGTTCAGATAGAACCTTTGCAATTACCTTACATGTTAAGGTAGTATGGCTGATTGGGCGGAAATCCTTGACTAGAGTTGCGTTCTCTTTTTTTGCACTAAACAAATGAAGTTTTCTTGAATGCAAGCATTTAATCTTCCATTTATGTGGAAATCATCCATTAAGGATTTGAAAATATCCTTGAAATTAGACCAATGTTTGATTAGGAACTTTGCTATGAATCCATCCGGGCTTGGAGCTTTATTGCTGCCAAGTGCCTTTAAAGCTTTAAAAATTTCCTCCACTGAAAATTGAGCAACAAGAGCCACATTCTAAATTGAGGAAACACATGACTAATTGCTATTAATAGGTATGAAGCTGTCCCTCGGAATTCTTGTATAAAGTGTCTCAAAAAATCTAGCACAAGTCTTTCAATGTCTCAGAACGAAGTTGACGCTATCCCATTATCGTCTCTTAATTCTGTTATGAGATTCCTTCTTTTCTTTGCATTTAAAAAGCAGTGGAAATAACCCGTGTTCTCATCACCCAAAGACAACCAATTAAGTTTACTTTTCTGAAAATAATTACGCTCTTCACTTTGGTAAATGTAGCTTGTAGAGTTGTTCTAGAACACAATTCCTCTTCATTTAGCCCAATCAACTCAGCCACAAAAGCATATTTTTCTAACTCTAATAGCAAGTTTTTTCTATTTCTTTTAACTTGGCTTGCGCTGCCATATTCCATTCTTTTACTACCATTTTAACTTATCTCAACTGCTCATAAAGTATGAAACTGGCCCATCCATGGAAGTTTGAACTACTAACTGTTTCAGCAATAATCTGATTACATTCACTGGACAGCAACCAACTGTTACAGAACCGAAAAGGATGACCCCAAAGAAAAGCACCAGCCTCTAAAATTAAAGGAAAGTGATTCGAGAAAATACGTGCTTTGCAAGAAACCCGAGAATTATTCAAAAGAACATCCCACTCCTGATTTATGAAAAATATGTCTAATAATGATCTGGAAGGAGAACTACCTTCTTTAGACCAAGTAAACCTTCCATTTTGCAATGGAATTTCTATGAGATTAACCAAATCAATGAACTTATTAAACAATGACAGTCGTTGAGTGCTCCAGTGGATTGGAAATCTTTCATGGGCCCAACAAGTTATATTAAAATCCCCACCTACACACCAAGTCACAGCTGAACAAGCAGCTAAGGAAGACAATTCAGGCCAAACCAATTTCCAAACTAGACATTTGTAATCCAACAGACCTTTTTGCACAAAGTGAGGCATTTGATAGACAGAGAGAAACGTCTTTTAATAACCTCAGTTACTGAAATTTTACTACTGTCCCACATGGTAAGAATTCCACCAAAAGACTCGATAGAGGCCACAAATTCCCCGCCAATATCCTTGGAACTCCACAGTGATTTTATAAAAACCGAAGTCAAGTTATCCTTCTTGGACTCTTGGATCACAACTACATCCAGACTGCAATTTTTATGAACTGTTTGAATGTTGCATGTTAAGAGGAATCATTAAGCCAGAATAATTCCACGATCACCGGTGCCGGCCATTGTATTCTTCTCCGGCGCCGGTGCGATAGTTGGAAAATTCTTCAAAATTTCAAATGGATTTCTGATTCTAGGGAGAGATGCAAACGCTCATTTTGGGATTTTCTATTGATGGAAAGAGGGAGGAATCAAGATCTTCATCAAGCATAAATTATCTAACTCTCAAACAATCAAGAGAGTTCTTAAAATCATCCCGGAAGTTAGGGGCTTTGAGGGGACTAGTAGGATTTAAAAATTCAAAATCACCAAAATGAAGGTAGATATTTCCCCTCTTTAGATCGGTGATTTCAATCGTGGACGGCACAAAGCCACATAAGTTCTTAACTTGAATTCGGGCTTCACTAACATTGATTAAATTCAAAATTTCGAAGGCTATATCTAAGAGACCTCCAAAATGATCCTCAATGACCTCAAAGATACTTCTACACCAGTAATCGAGAGGAAGGTTTTTAACCTTGAGCCAGTCGCCATATCCTTTTTGAACAAGTTGCCGGTTGTGTTTGAGGTTATCCCATCTTTTGAATTTGAGGTGAACATTACCCTAGGCCTGCCATTTTCCTTCCTCATGGATGGAATCTAAAATTGATCCTTGGTCAATGCTAATGAGGGCATTCTCATCATATAGAAGATTTATAACAATTTTTGTTTGGAAAAGAACTTCCAGCCTCTTTCAGATCAGTTTTCAGTTGTCTGAATCAAATAATTTTGTTATAATCCATAAATTTTTGAAATTGACATTCACAACTTCATGATTCTTAATCAGCCAATCCTTTTATTTTGAAAGGGGAAGGACTGGCTCTTGAATCTTCCTTTTTTGACTAGGAATCTGGCCTGTTACCTTAACTTGTAACCTTGGGACGGGGGAGTTGGAAAGACTTGATTTTGCGATTTCTAACATAACTTAGTTTCCTACTCGAATTCGGAGAAGGTATCTTGGAGGAATTACCAGAAAACCATCTAGCGTAATCCAGTTTTTCAACGAACTTACCCAGCATTGAGCAAAACAGCTTCCATCCTTGCTGCTCATTACCTAAGCACACTCTAATATTGTAGAGCCCCCCTGAATATGGCCAACGATCACAGCTGAGTATCCAACCAAACTTAGCTTGAAACTTTGAAATTCTCAATCTTCATCTGTCAATGTCCCTGAGTTTCCTAAAATGTCTGTCCATCGGAAATCTGATAAGATCAGTTAAAGCTGATAGGATCCATCTAAGTTGGCTAACCGAGAGAGATGCTTCTGCCGGCTTCTACATCTTCCTTCTTGCCAGTCAATTTTACAACTAACAACCTCCATAATGTGCTCTGAGACTTAACGGAGAGGACTGCTGAAAAACCTGGCTGCCAGAGAGGGGAGGAGAGGGGAGGTTGGTGATGGTCAACAGGGAATAATAAGATGTAAGCCTTATTCCTTTGCCCTTGTATATTCTTTCATCTATCTTGATGAAGTTTGTTTGTTTCTAATATATAAGGACTCGTCAATGACTCAATAGAGCATTCATAGTTTAAGCTATTTTTTCAACTTTCACAAGAGGAACTTTCAATCCATCTTCTTATGATGGACTGACGGATTGGGTTCCATGTACTGAAGACAGTGCATTCTAATAGGCAAATTTTCAAGAAGTGTTAAACAATCTTGCTGGTACATGCTTTGGGAGAACTGAAGACGTGTGGCAGAATAGTTACTGCTAAAAGAGTTGATGAAAAGGATTATAAACATTACCAATGCCATTAAATTTTGTTCTCACCATATGTCAGTTCCTAATTACAACTATTTCATTACAATCTAGTTGCATAATGATTGACTGAAATAATCGAACTTAGTATGTATGTCACCAGATCAATAACTGATTAAATACACGTAAACTGATTATCCACTTAACCATTTAACTAACCTTGACATTTATATATATATATATATTACACTTCTCTAAGTATCCTAGATAAGCATTTTTTTTCCTTTCAATGTTTCTTTTACCATGGCATCAAACAATATTAAAGGGTTTCCGTTGGCTATGATAATAAAGTACTAAGGCATGGAATATGATAATACTGTGTAAAGACTCTTTTTATCTTCCTTTTGCTGGGAATTACAATGCAGAAAATTAACCTCATAAAGTTTTGGTGTATAGCAATCGAACAAGAATTGGAAGATGCAATATATAAAGCTGGTGGAATTTGTGATAGCAACTATGGAAATCTGAACAAAATCTCATGGGCAAGGAGTAGCCGCACTGATAAAGGAGTAAATATCTTGAATGTCTTAGTACCTCATTTTATGACTTCTATAAACTTATTGGTTGTTTTGAATTGTTATTTCATCTCTTTCTAATTCAAGGTTCATTCTTTGGCTACAACAATAACCTTAAAAATGGAAATCCCTGGAAGTGCATGGATAGACGACCCTTGTGGTATTTCACTTGCTGATTACATCAACTCTTATCTTCCTGATAATATCAAGGTTTTTGGCATTGTACCTGCACAGAAGTGAGTGTTCTGAGGTTTTTTCATTGGTGCTTTTTAAGTGAGTAAATGAAGTGTTAGCACTAGCATGATACACTTTTACGCATAAACTACAAAGTGGTAACATTGCATCAATTTTGTTACTTGTCAAGGAGGTTTGATCCTAGAAAGGAGTGTGATGTTCGGATGTATTCGTATCTCCTCCCTGCTAAGCTTATTGGAATTGAAAGTAAACTTAAAACTACTGAAATTGATTGCCACATCTCAGACTTTAAAGATATATTAAAATCCTTTGAGGTACGTTATGATCTCCTTCAATTAATTACATACGCATCATATTGCCCCTTCCTTCACTGCAAGAAACATGATTTGTTATTTGATACAGTATAGTGCTGTTATTTGGGAAGACAATTATATGTCGTTGAAGAACAAAGGTGAATTCTTTTTGGCCACAGGGGGACCATCCTTTTCATAATTATACAGTACGCTCCATTTATAGAACGAGAATTCGAGCCAAGCAACTAGTATATGCCCTTAAGTCAGGCAAGAAGGTATCACCCGGTGATATGTCAAACTCTGAGTTTGAGGGAAGTGATCAAGAAAATGATACTTTTGTTGAAGGAATCAAGGAACCAGATCAACGTTCTCCAAGCTTAAGCGTCTGTGAAAATCTAACTGAAGTATGCAGTAAACTTGAAGATGGATCAGAACTTCTGAAGGGTGTTCGTGCAAGATGGCTTCATGAGCCAGATGAGAAAGATCGTATAGGCGCCTCACACTTCAGAAGGATTCTTTACTGTTCTTGTGGGAAGCTGGAAACATATTTTGGATGTGATTTCATTGAGATATCCATTTGGGGAGAATCATTCATGTTGCATCAAGTTAGTCTTTCTCTAACATTGTTTTTATGGTACATAATTTGTTCTCATCCATTTTCATTCCAATTTGTAAGTTAATCTATATTTACTCCATTTATTCTTGATTTCAGTTGGTAGCTCTATTGCTTAGATAGGTTTTCCGTTGTAATGCCTCCGGTAGCTTATATCTTGCTTCTGGCCATGTGGGAGCCAAATTTTGGTTTTATAACTGTACTTTGGTGCTCACTCGACAACTTTTTTGCTGCATTATTTCACTTTTTAGACTCTTTTCCCTCTTTGGAAATCAATGCTGGCTTAATGGACTTTTTCCTGTGCTAGTAGTCCAAAAAATTAAGAAATAGCTATGGGTTTATGTTTTAGGAAATTAAATTAAATTCTAAAATATTACCATCGATTAAATAATTTGATGGTCCTATCCATTCCTGGACGAAAGATAGTAGTTAATGGGTTCAAGTTTTATGAGCTTGACTTGTTCAATATCTACCATTATAACCTTCATTTACTTCCTGAGGTTATAAATTTGTAGGATCAGCATGGTCCCTGTGCATTGGTGGACAGAAGATATGAGTTGATGAGTTCAAGCTTTATGAGCTTGACTTGTTAACTATATACCATCATAACCTTCATTTACTCCCTAAGGTTCATAATTCATGAGTTCAAGCTTTATGAGAAACTAGAATCTATTATTAAGTTTAGGAATTGGAAGGAGAGTGGGAGGTGAAAAGGTGTCAGGCTTTCTTTTGGCAGATTTCTCATTTCCATTCTTTTTGTAACTTTTGAGCTGATAATATGATGTTTTCTTATTAAAAAAGAACATCAATAACATATCTTATGAACAATGAAGTTGTTTTCATTAGTAATTAATAAAGGGTAGTTAATGTTCTAGTTTTAAAACGAAAGGACCATTCTGATGCAACTTTTATTACATCCTTGGCAGATTCGGAAAATGATAGCAACGGCTGTGGCAGTGAAGCGGAAACTTCTCCCAAGAGATATTATAACATTGTCACTGACCAAGTTTTCTAGAATAGTTTTACCCATTGCTCCAGCTGAAGTCTTAGTCCTAAGAGGGAACAGTTTTTCCAACAGAAAACGGCCAGGAGCTCCAATGAGGTCAGAGTTGTTCACACTGAATGAATCAGATGACATAGTCAATTCAGTGAATGAATTCTACAGATCAGCGATATTGCCCGAGGTAACTAAGTTCCTGGACACAGAAAGCCCCCCATGGAAAGAATGGGTGGAGAAATTGGACAAGTACACAAGCATTCCGAATGAAGAATTGGATGAAGTTAGGAGTGCTTGGAAAGCATGGAAGTACAGGGAACATTGATCTGATCATGAGAAATCAAGATGGCCTTTGAATTATGTTGATGTGTTTTTTTGTCTGCCCCTCTGTTGTTGGAAGTCGTCAAAAACTTGAATGTTGAAGAAGGATGGGAAGCAGTTGAGTTTGAGTTAGGGGAGTTATTAATGGCATAAATTATGGGAATTGGGCATTGAATGGACGTGGTCTGTGGCCACCCACCAGCCGGGGGGCGTTTTAATAAGCTCAGCATCAACTGCAGACAATCAACTGGGGAATTGGCACAAGCCACAAGGGAGTGAGCTCACATTCAATGTAAATGGCTTAAAAGGCGAAATATGTAGGTGAGCCTTTGACACAGGGCTGTACTGATGTTGATTCAACTTCATTTCTGATGGAAATTTGGATCTAAACTTTGACTAATACCCATTATGAACATTTCATGTTGCTTTCCCTCTTAATTTACAATGATATACTGTTTATTGTTTTTTTGTTGTAGAATATGCATTTATTATCTTATGGTTGGTCTTTCATTAATCTTGGTAGAAAACCTCCCTTCAGAATGGAGTAATACATGTCTAGACAGTCTATCCAACCCCATTTCTTATCTAGTGCTTCTTTTTCAAAAAGCAATAAACAAT

mRNA sequence

ATGTCAGTCTCTTCTTTGCGACTCCCACTTTCCCCATGGATAACCAAAGCTTCATCTTCATGTTTTCGTTTCCCCGACCCTGTTTTCGTTTCCCGGACTCCTCCTCTTAGGCCTGCACTGCTCCACTTTTTCTCATCTTCTACTGCCTCCACCGATGCTTTTTCCACTCGGTGCGCTCCGGATCAGCTCCGGAAATGGCAAGCTTTCCGTAAGAAAAAGGTCGTTTTGCGAATCGGCTATGTCGGGACTGATTATCGAGGGCTACAAATGCAACGCAACCAACTGTCACATCCAACAATCGAACAAGAATTGGAAGATGCAATATATAAAGCTGGTGGAATTTGTGATAGCAACTATGGAAATCTGAACAAAATCTCATGGGCAAGGAGTAGCCGCACTGATAAAGGAGTTCATTCTTTGGCTACAACAATAACCTTAAAAATGGAAATCCCTGGAAGTGCATGGATAGACGACCCTTGTGGTATTTCACTTGCTGATTACATCAACTCTTATCTTCCTGATAATATCAAGGTTTTTGGCATTGTACCTGCACAGAAGAGGTTTGATCCTAGAAAGGAGTGTGATGTTCGGATGTATTCGTATCTCCTCCCTGCTAAGCTTATTGGAATTGAAAGTAAACTTAAAACTACTGAAATTGATTGCCACATCTCAGACTTTAAAGATATATTAAAATCCTTTGAGGGGGACCATCCTTTTCATAATTATACAGTACGCTCCATTTATAGAACGAGAATTCGAGCCAAGCAACTAGTATATGCCCTTAAGTCAGGCAAGAAGGTATCACCCGGTGATATGTCAAACTCTGAGTTTGAGGGAAGTGATCAAGAAAATGATACTTTTGTTGAAGGAATCAAGGAACCAGATCAACGTTCTCCAAGCTTAAGCGTCTGTGAAAATCTAACTGAAGTATGCAGTAAACTTGAAGATGGATCAGAACTTCTGAAGGGTGTTCGTGCAAGATGGCTTCATGAGCCAGATGAGAAAGATCGTATAGGCGCCTCACACTTCAGAAGGATTCTTTACTGTTCTTGTGGGAAGCTGGAAACATATTTTGGATGTGATTTCATTGAGATATCCATTTGGGGAGAATCATTCATGTTGCATCAAATTCGGAAAATGATAGCAACGGCTGTGGCAGTGAAGCGGAAACTTCTCCCAAGAGATATTATAACATTGTCACTGACCAAGTTTTCTAGAATAGTTTTACCCATTGCTCCAGCTGAAGTCTTAGTCCTAAGAGGGAACAGTTTTTCCAACAGAAAACGGCCAGGAGCTCCAATGAGGTCAGAGTTGTTCACACTGAATGAATCAGATGACATAGTCAATTCAGTGAATGAATTCTACAGATCAGCGATATTGCCCGAGGTAACTAAGTTCCTGGACACAGAAAGCCCCCCATGGAAAGAATGGGTGGAGAAATTGGACAAGTACACAAGCATTCCGAATGAAGAATTGGATGAAGTTAGGAGTGCTTGGAAAGCATGGAAGTACAGGGAACATTGA

Coding sequence (CDS)

ATGTCAGTCTCTTCTTTGCGACTCCCACTTTCCCCATGGATAACCAAAGCTTCATCTTCATGTTTTCGTTTCCCCGACCCTGTTTTCGTTTCCCGGACTCCTCCTCTTAGGCCTGCACTGCTCCACTTTTTCTCATCTTCTACTGCCTCCACCGATGCTTTTTCCACTCGGTGCGCTCCGGATCAGCTCCGGAAATGGCAAGCTTTCCGTAAGAAAAAGGTCGTTTTGCGAATCGGCTATGTCGGGACTGATTATCGAGGGCTACAAATGCAACGCAACCAACTGTCACATCCAACAATCGAACAAGAATTGGAAGATGCAATATATAAAGCTGGTGGAATTTGTGATAGCAACTATGGAAATCTGAACAAAATCTCATGGGCAAGGAGTAGCCGCACTGATAAAGGAGTTCATTCTTTGGCTACAACAATAACCTTAAAAATGGAAATCCCTGGAAGTGCATGGATAGACGACCCTTGTGGTATTTCACTTGCTGATTACATCAACTCTTATCTTCCTGATAATATCAAGGTTTTTGGCATTGTACCTGCACAGAAGAGGTTTGATCCTAGAAAGGAGTGTGATGTTCGGATGTATTCGTATCTCCTCCCTGCTAAGCTTATTGGAATTGAAAGTAAACTTAAAACTACTGAAATTGATTGCCACATCTCAGACTTTAAAGATATATTAAAATCCTTTGAGGGGGACCATCCTTTTCATAATTATACAGTACGCTCCATTTATAGAACGAGAATTCGAGCCAAGCAACTAGTATATGCCCTTAAGTCAGGCAAGAAGGTATCACCCGGTGATATGTCAAACTCTGAGTTTGAGGGAAGTGATCAAGAAAATGATACTTTTGTTGAAGGAATCAAGGAACCAGATCAACGTTCTCCAAGCTTAAGCGTCTGTGAAAATCTAACTGAAGTATGCAGTAAACTTGAAGATGGATCAGAACTTCTGAAGGGTGTTCGTGCAAGATGGCTTCATGAGCCAGATGAGAAAGATCGTATAGGCGCCTCACACTTCAGAAGGATTCTTTACTGTTCTTGTGGGAAGCTGGAAACATATTTTGGATGTGATTTCATTGAGATATCCATTTGGGGAGAATCATTCATGTTGCATCAAATTCGGAAAATGATAGCAACGGCTGTGGCAGTGAAGCGGAAACTTCTCCCAAGAGATATTATAACATTGTCACTGACCAAGTTTTCTAGAATAGTTTTACCCATTGCTCCAGCTGAAGTCTTAGTCCTAAGAGGGAACAGTTTTTCCAACAGAAAACGGCCAGGAGCTCCAATGAGGTCAGAGTTGTTCACACTGAATGAATCAGATGACATAGTCAATTCAGTGAATGAATTCTACAGATCAGCGATATTGCCCGAGGTAACTAAGTTCCTGGACACAGAAAGCCCCCCATGGAAAGAATGGGTGGAGAAATTGGACAAGTACACAAGCATTCCGAATGAAGAATTGGATGAAGTTAGGAGTGCTTGGAAAGCATGGAAGTACAGGGAACATTGA

Protein sequence

MSVSSLRLPLSPWITKASSSCFRFPDPVFVSRTPPLRPALLHFFSSSTASTDAFSTRCAPDQLRKWQAFRKKKVVLRIGYVGTDYRGLQMQRNQLSHPTIEQELEDAIYKAGGICDSNYGNLNKISWARSSRTDKGVHSLATTITLKMEIPGSAWIDDPCGISLADYINSYLPDNIKVFGIVPAQKRFDPRKECDVRMYSYLLPAKLIGIESKLKTTEIDCHISDFKDILKSFEGDHPFHNYTVRSIYRTRIRAKQLVYALKSGKKVSPGDMSNSEFEGSDQENDTFVEGIKEPDQRSPSLSVCENLTEVCSKLEDGSELLKGVRARWLHEPDEKDRIGASHFRRILYCSCGKLETYFGCDFIEISIWGESFMLHQIRKMIATAVAVKRKLLPRDIITLSLTKFSRIVLPIAPAEVLVLRGNSFSNRKRPGAPMRSELFTLNESDDIVNSVNEFYRSAILPEVTKFLDTESPPWKEWVEKLDKYTSIPNEELDEVRSAWKAWKYREH*

Homology

[Close]

BLAST of CsaV3_1G036700 vs. NCBI nr
Match: XP_004145230.1 (putative tRNA pseudouridine synthase isoform X2 [Cucumis sativus] >KGN66289.2 hypothetical protein Csa_023335 [Cucumis sativus])

HSP 1 Score: 1032.3 bits (2668), Expect = 1.4e-297
Identity = 507/507 (100.00%), Postives = 507/507 (100.00%), Query Frame = 0


Query: 1   MSVSSLRLPLSPWITKASSSCFRFPDPVFVSRTPPLRPALLHFFSSSTASTDAFSTRCAP 60
           MSVSSLRLPLSPWITKASSSCFRFPDPVFVSRTPPLRPALLHFFSSSTASTDAFSTRCAP
Sbjct: 1   MSVSSLRLPLSPWITKASSSCFRFPDPVFVSRTPPLRPALLHFFSSSTASTDAFSTRCAP 60

Query: 61  DQLRKWQAFRKKKVVLRIGYVGTDYRGLQMQRNQLSHPTIEQELEDAIYKAGGICDSNYG 120
           DQLRKWQAFRKKKVVLRIGYVGTDYRGLQMQRNQLSHPTIEQELEDAIYKAGGICDSNYG
Sbjct: 61  DQLRKWQAFRKKKVVLRIGYVGTDYRGLQMQRNQLSHPTIEQELEDAIYKAGGICDSNYG 120

Query: 121 NLNKISWARSSRTDKGVHSLATTITLKMEIPGSAWIDDPCGISLADYINSYLPDNIKVFG 180
           NLNKISWARSSRTDKGVHSLATTITLKMEIPGSAWIDDPCGISLADYINSYLPDNIKVFG
Sbjct: 121 NLNKISWARSSRTDKGVHSLATTITLKMEIPGSAWIDDPCGISLADYINSYLPDNIKVFG 180

Query: 181 IVPAQKRFDPRKECDVRMYSYLLPAKLIGIESKLKTTEIDCHISDFKDILKSFEGDHPFH 240
           IVPAQKRFDPRKECDVRMYSYLLPAKLIGIESKLKTTEIDCHISDFKDILKSFEGDHPFH
Sbjct: 181 IVPAQKRFDPRKECDVRMYSYLLPAKLIGIESKLKTTEIDCHISDFKDILKSFEGDHPFH 240

Query: 241 NYTVRSIYRTRIRAKQLVYALKSGKKVSPGDMSNSEFEGSDQENDTFVEGIKEPDQRSPS 300
           NYTVRSIYRTRIRAKQLVYALKSGKKVSPGDMSNSEFEGSDQENDTFVEGIKEPDQRSPS
Sbjct: 241 NYTVRSIYRTRIRAKQLVYALKSGKKVSPGDMSNSEFEGSDQENDTFVEGIKEPDQRSPS 300

Query: 301 LSVCENLTEVCSKLEDGSELLKGVRARWLHEPDEKDRIGASHFRRILYCSCGKLETYFGC 360
           LSVCENLTEVCSKLEDGSELLKGVRARWLHEPDEKDRIGASHFRRILYCSCGKLETYFGC
Sbjct: 301 LSVCENLTEVCSKLEDGSELLKGVRARWLHEPDEKDRIGASHFRRILYCSCGKLETYFGC 360

Query: 361 DFIEISIWGESFMLHQIRKMIATAVAVKRKLLPRDIITLSLTKFSRIVLPIAPAEVLVLR 420
           DFIEISIWGESFMLHQIRKMIATAVAVKRKLLPRDIITLSLTKFSRIVLPIAPAEVLVLR
Sbjct: 361 DFIEISIWGESFMLHQIRKMIATAVAVKRKLLPRDIITLSLTKFSRIVLPIAPAEVLVLR 420

Query: 421 GNSFSNRKRPGAPMRSELFTLNESDDIVNSVNEFYRSAILPEVTKFLDTESPPWKEWVEK 480
           GNSFSNRKRPGAPMRSELFTLNESDDIVNSVNEFYRSAILPEVTKFLDTESPPWKEWVEK
Sbjct: 421 GNSFSNRKRPGAPMRSELFTLNESDDIVNSVNEFYRSAILPEVTKFLDTESPPWKEWVEK 480

Query: 481 LDKYTSIPNEELDEVRSAWKAWKYREH 508
           LDKYTSIPNEELDEVRSAWKAWKYREH
Sbjct: 481 LDKYTSIPNEELDEVRSAWKAWKYREH 507

[Close]

BLAST of CsaV3_1G036700 vs. NCBI nr
Match: XP_031742713.1 (putative tRNA pseudouridine synthase isoform X1 [Cucumis sativus])

HSP 1 Score: 1019.2 bits (2634), Expect = 1.2e-293
Identity = 506/526 (96.20%), Postives = 507/526 (96.39%), Query Frame = 0


Query: 1   MSVSSLRLPLSPWITKASSSCFRFPDPVFVSRTPPLRPALLHFFSSSTASTDAFSTRCAP 60
           MSVSSLRLPLSPWITKASSSCFRFPDPVFVSRTPPLRPALLHFFSSSTASTDAFSTRCAP
Sbjct: 1   MSVSSLRLPLSPWITKASSSCFRFPDPVFVSRTPPLRPALLHFFSSSTASTDAFSTRCAP 60

Query: 61  DQLRKWQAFRKKKVVLRIGYVGTDYRGLQMQRNQLSHP-------------------TIE 120
           DQLRKWQAFRKKKVVLRIGYVGTDYRGLQMQRNQLSHP                   +IE
Sbjct: 61  DQLRKWQAFRKKKVVLRIGYVGTDYRGLQMQRNQLSHPRFNSTTNLFHNDQLKLLRFSIE 120

Query: 121 QELEDAIYKAGGICDSNYGNLNKISWARSSRTDKGVHSLATTITLKMEIPGSAWIDDPCG 180
           QELEDAIYKAGGICDSNYGNLNKISWARSSRTDKGVHSLATTITLKMEIPGSAWIDDPCG
Sbjct: 121 QELEDAIYKAGGICDSNYGNLNKISWARSSRTDKGVHSLATTITLKMEIPGSAWIDDPCG 180

Query: 181 ISLADYINSYLPDNIKVFGIVPAQKRFDPRKECDVRMYSYLLPAKLIGIESKLKTTEIDC 240
           ISLADYINSYLPDNIKVFGIVPAQKRFDPRKECDVRMYSYLLPAKLIGIESKLKTTEIDC
Sbjct: 181 ISLADYINSYLPDNIKVFGIVPAQKRFDPRKECDVRMYSYLLPAKLIGIESKLKTTEIDC 240

Query: 241 HISDFKDILKSFEGDHPFHNYTVRSIYRTRIRAKQLVYALKSGKKVSPGDMSNSEFEGSD 300
           HISDFKDILKSFEGDHPFHNYTVRSIYRTRIRAKQLVYALKSGKKVSPGDMSNSEFEGSD
Sbjct: 241 HISDFKDILKSFEGDHPFHNYTVRSIYRTRIRAKQLVYALKSGKKVSPGDMSNSEFEGSD 300

Query: 301 QENDTFVEGIKEPDQRSPSLSVCENLTEVCSKLEDGSELLKGVRARWLHEPDEKDRIGAS 360
           QENDTFVEGIKEPDQRSPSLSVCENLTEVCSKLEDGSELLKGVRARWLHEPDEKDRIGAS
Sbjct: 301 QENDTFVEGIKEPDQRSPSLSVCENLTEVCSKLEDGSELLKGVRARWLHEPDEKDRIGAS 360

Query: 361 HFRRILYCSCGKLETYFGCDFIEISIWGESFMLHQIRKMIATAVAVKRKLLPRDIITLSL 420
           HFRRILYCSCGKLETYFGCDFIEISIWGESFMLHQIRKMIATAVAVKRKLLPRDIITLSL
Sbjct: 361 HFRRILYCSCGKLETYFGCDFIEISIWGESFMLHQIRKMIATAVAVKRKLLPRDIITLSL 420

Query: 421 TKFSRIVLPIAPAEVLVLRGNSFSNRKRPGAPMRSELFTLNESDDIVNSVNEFYRSAILP 480
           TKFSRIVLPIAPAEVLVLRGNSFSNRKRPGAPMRSELFTLNESDDIVNSVNEFYRSAILP
Sbjct: 421 TKFSRIVLPIAPAEVLVLRGNSFSNRKRPGAPMRSELFTLNESDDIVNSVNEFYRSAILP 480

Query: 481 EVTKFLDTESPPWKEWVEKLDKYTSIPNEELDEVRSAWKAWKYREH 508
           EVTKFLDTESPPWKEWVEKLDKYTSIPNEELDEVRSAWKAWKYREH
Sbjct: 481 EVTKFLDTESPPWKEWVEKLDKYTSIPNEELDEVRSAWKAWKYREH 526

[Close]

BLAST of CsaV3_1G036700 vs. NCBI nr
Match: XP_008457308.1 (PREDICTED: putative tRNA pseudouridine synthase [Cucumis melo])

HSP 1 Score: 922.2 bits (2382), Expect = 2.0e-264
Identity = 457/508 (89.96%), Postives = 475/508 (93.50%), Query Frame = 0


Query: 1   MSVSSLRLPLSPWITKASSSCFRFPDPVFVSRTPPLRPALLHFFSSSTASTDAFSTRCAP 60
           MSVSSLRLPLSPWITK+SSSCFRFP PVFV RTP LRP LL+ FSS+ ASTDAFST+CAP
Sbjct: 1   MSVSSLRLPLSPWITKSSSSCFRFPYPVFVPRTPRLRPTLLYCFSSAAASTDAFSTQCAP 60

Query: 61  DQLRKWQAFRKKKVVLRIGYVGTDYRGLQMQRNQLSHPTIEQELEDAIYKAGGICDSNYG 120
           DQLRKWQAFRKKKVVLRIGYVGTDYRGLQMQRNQLSHPTIEQELE AIYKAGGI +SNYG
Sbjct: 61  DQLRKWQAFRKKKVVLRIGYVGTDYRGLQMQRNQLSHPTIEQELEAAIYKAGGIRESNYG 120

Query: 121 NLNKISWARSSRTDKGVHSLATTITLKMEIPGSAWIDDPCGISLADYINSYLPDNIKVFG 180
           NLNKISWARSSRTDKGVHSLATTITLKMEIP SAW+ DPCGISLADYINSYLPDNIKVFG
Sbjct: 121 NLNKISWARSSRTDKGVHSLATTITLKMEIPESAWMGDPCGISLADYINSYLPDNIKVFG 180

Query: 181 IVPAQKRFDPRKECDVRMYSYLLPAKLIGIESKLKTTEIDCHISDFKDILKSFEGDHPFH 240
           IVP+Q+ FDPRKECDVR YSYLLPAKLIGIESKLKTTEIDCHISDFKDIL SFEG+HPFH
Sbjct: 181 IVPSQRSFDPRKECDVRKYSYLLPAKLIGIESKLKTTEIDCHISDFKDILNSFEGEHPFH 240

Query: 241 NYTVRSIYRTRIRAKQLV-YALKSGKKVSPGDMSNSEFEGSDQENDTFVEGIKEPDQRSP 300
           NYT+RS YRTRIRAKQ   YALKSG KVSPG+MSN EFE SD+E+DTFVEG+KEPDQ SP
Sbjct: 241 NYTIRSNYRTRIRAKQSPGYALKSGNKVSPGEMSNFEFEESDREDDTFVEGVKEPDQCSP 300

Query: 301 SLSVCENLTEVCSKLEDGSELLKGVRARWLHEPDEKDRIGASHFRRILYCSCGKLETYFG 360
           SLSVCENLTEVCSKLEDGSELLKGVRARWLHEPDEKDRIGASHFRRIL CSCGKLET FG
Sbjct: 301 SLSVCENLTEVCSKLEDGSELLKGVRARWLHEPDEKDRIGASHFRRILCCSCGKLETSFG 360

Query: 361 CDFIEISIWGESFMLHQIRKMIATAVAVKRKLLPRDIITLSLTKFSRIVLPIAPAEVLVL 420
            DFIEISIWGESFMLHQIRKMI TAVAVKRKLLPRD+I LSLTKFSRIVLPIAPAEVLVL
Sbjct: 361 YDFIEISIWGESFMLHQIRKMIGTAVAVKRKLLPRDVIALSLTKFSRIVLPIAPAEVLVL 420

Query: 421 RGNSFSNRKRPGAPMRSELFTLNESDDIVNSVNEFYRSAILPEVTKFLDTESPPWKEWVE 480
           RGNSFS RKRPG P R +L TLNESDDI+ SVNEFYRSAILPEVT+FLDTESPPWKEWVE
Sbjct: 421 RGNSFSTRKRPGVPTRPDLVTLNESDDIIKSVNEFYRSAILPEVTEFLDTESPPWKEWVE 480

Query: 481 KLDKYTSIPNEELDEVRSAWKAWKYREH 508
           KLDKYTSIPNEELDEVRSAWKAWKYR H
Sbjct: 481 KLDKYTSIPNEELDEVRSAWKAWKYRVH 508

[Close]

BLAST of CsaV3_1G036700 vs. NCBI nr
Match: XP_038894774.1 (putative tRNA pseudouridine synthase isoform X1 [Benincasa hispida])

HSP 1 Score: 844.3 bits (2180), Expect = 5.3e-241
Identity = 422/508 (83.07%), Postives = 452/508 (88.98%), Query Frame = 0


Query: 1   MSVSSLRLPLSPWITKASSSCFRFPDPVFVSRTPPLRPALLHFFSSSTASTDAFSTRCAP 60
           M+VSSLRLPLSPWITK SSSCF FP P FVSRT  L P L    +SSTASTDAFST+CAP
Sbjct: 1   MAVSSLRLPLSPWITKTSSSCFLFPYPTFVSRTHRLGPTLSGCSASSTASTDAFSTQCAP 60

Query: 61  DQLRKWQAFRKKKVVLRIGYVGTDYRGLQMQRNQLSHPTIEQELEDAIYKAGGICDSNYG 120
           +QLRKW+AFRKKKVVLRIGYVGTDYRGLQMQR Q SHPTIEQELE AIYKAGGI +SNYG
Sbjct: 61  NQLRKWEAFRKKKVVLRIGYVGTDYRGLQMQREQQSHPTIEQELEAAIYKAGGIRESNYG 120

Query: 121 NLNKISWARSSRTDKGVHSLATTITLKMEIPGSAWIDDPCGISLADYINSYLPDNIKVFG 180
           NLNKISWARSSRTDKGVHSLATTI LKMEIP SAW+ DPCGISLA+YIN YLPDNIKVFG
Sbjct: 121 NLNKISWARSSRTDKGVHSLATTIALKMEIPESAWMGDPCGISLANYINFYLPDNIKVFG 180

Query: 181 IVPAQKRFDPRKECDVRMYSYLLPAKLIGIESKLKTTEIDCHISDFKDILKSFEGDHPFH 240
           IVP+QK FDPRKECDVR YSY+LPAKLIGI +KLKTTE+D HISDFKDIL SF+G+HPFH
Sbjct: 181 IVPSQKSFDPRKECDVRKYSYVLPAKLIGIGNKLKTTEVDYHISDFKDILNSFQGEHPFH 240

Query: 241 NYTVRSIYRTRIRAKQLVYALKSGKKVSPGDMSNSEFEGSDQENDTFVEGIKEPDQRSPS 300
           NYT+RS YRTRIRAK+   +   G +VSP D+SNSEFE SD E+DTFVEG+KEPDQ SPS
Sbjct: 241 NYTIRSKYRTRIRAKR---SPGYGHEVSPSDVSNSEFEESDGEDDTFVEGVKEPDQGSPS 300

Query: 301 LSVC-ENLTEVCSKLEDGSELLKGVRARWLHEPDEKDRIGASHFRRILYCSCGKLETYFG 360
           LSVC EN TEVCSKL DGSEL K VRARWLHEPDEKDRIGASHFR+IL CSCGKLET FG
Sbjct: 301 LSVCYENPTEVCSKLGDGSELPKDVRARWLHEPDEKDRIGASHFRKILCCSCGKLETSFG 360

Query: 361 CDFIEISIWGESFMLHQIRKMIATAVAVKRKLLPRDIITLSLTKFSRIVLPIAPAEVLVL 420
            DF+EISIWGESFMLHQIRKMI TA+AVKRKLLPRD+I LSL+KFSRIVLPIAPAEVLVL
Sbjct: 361 YDFVEISIWGESFMLHQIRKMIGTAIAVKRKLLPRDVIALSLSKFSRIVLPIAPAEVLVL 420

Query: 421 RGNSFSNRKRPGAPMRSELFTLNESDDIVNSVNEFYRSAILPEVTKFLDTESPPWKEWVE 480
           RGNSFSNRKRPG P R +L TLNESDDIV SVNEFYRSAILPEVT FLDTE PPWKEWVE
Sbjct: 421 RGNSFSNRKRPGVPKRPDLLTLNESDDIVKSVNEFYRSAILPEVTNFLDTERPPWKEWVE 480

Query: 481 KLDKYTSIPNEELDEVRSAWKAWKYREH 508
           KLDKYTSIP+E+LDEVR+AWKAW YR H
Sbjct: 481 KLDKYTSIPSEQLDEVRNAWKAWNYRVH 505

[Close]

BLAST of CsaV3_1G036700 vs. NCBI nr
Match: XP_022970646.1 (putative tRNA pseudouridine synthase [Cucurbita maxima])

HSP 1 Score: 810.8 bits (2093), Expect = 6.5e-231
Identity = 409/505 (80.99%), Postives = 440/505 (87.13%), Query Frame = 0


Query: 1   MSVSSLRLPLSPWITKASSSCFRFPDPVFVSRTPPLRPALLHFFSSSTASTDAFSTRCAP 60
           M+VSSLR PLSPW TK S  CFRFP P FVS T  LRP LL   SSSTASTDA ST+CAP
Sbjct: 1   MAVSSLRFPLSPWATKTSFPCFRFPYPNFVSWTSRLRPRLLCCSSSSTASTDALSTQCAP 60

Query: 61  DQLRKWQAFRKKKVVLRIGYVGTDYRGLQMQRNQLSHPTIEQELEDAIYKAGGICDSNYG 120
           DQLRKW+AFRKKKVV+RIGYVGTDYRGLQMQR Q SHPTIEQELE AIYKAGGI +SNYG
Sbjct: 61  DQLRKWEAFRKKKVVMRIGYVGTDYRGLQMQREQSSHPTIEQELEAAIYKAGGIRESNYG 120

Query: 121 NLNKISWARSSRTDKGVHSLATTITLKMEIPGSAWIDDPCGISLADYINSYLPDNIKVFG 180
           NLNKISWARSSRTDKGVHSLATTITLKMEIP SAW+ DPCGI LA+YIN YLP+NIKVFG
Sbjct: 121 NLNKISWARSSRTDKGVHSLATTITLKMEIPDSAWMGDPCGILLANYINFYLPENIKVFG 180

Query: 181 IVPAQKRFDPRKECDVRMYSYLLPAKLIGIESKLKTTEIDCHISDFKDILKSFEGDHPFH 240
           IVP+Q+ FDPR+ECDVR Y+YLLPAKLIGIESKL TTEID HIS+FKDIL SF+G+HPFH
Sbjct: 181 IVPSQRSFDPRRECDVRKYTYLLPAKLIGIESKLTTTEIDYHISEFKDILNSFQGEHPFH 240

Query: 241 NYTVRSIYRTRIRAKQLV-YALKSGKKVSPGDMSNSEFEGSDQENDTFV-EGIKEPDQRS 300
           NYT+RS YRTRIRA Q   Y  KSG  VS  D+SNSEFE SD END FV  GIKEP+Q S
Sbjct: 241 NYTIRSKYRTRIRANQSPGYVHKSGDGVSSSDLSNSEFEESDGENDIFVGGGIKEPNQHS 300

Query: 301 PSLSVC-ENLTEVCSKLEDGSELLKGVRARWLHEPDEKDRIGASHFRRILYCSCGKLETY 360
           PSLS C EN  EVCSKL +GSEL +GVRARWLHEPDE+DRIGASHFR+IL CSCGKLET 
Sbjct: 301 PSLSGCNENTFEVCSKLGNGSELPQGVRARWLHEPDERDRIGASHFRKILCCSCGKLETS 360

Query: 361 FGCDFIEISIWGESFMLHQIRKMIATAVAVKRKLLPRDIITLSLTKFSRIVLPIAPAEVL 420
            G DF+EISIWGESFMLHQIRKM+ TA+AVKRKLLPRDII LSL+KFSRIVLPIAPAEVL
Sbjct: 361 LGYDFVEISIWGESFMLHQIRKMVGTAIAVKRKLLPRDIIALSLSKFSRIVLPIAPAEVL 420

Query: 421 VLRGNSFSNRKRPGAPMRSELFTLNESDDIVNSVNEFYRSAILPEVTKFLDTESPPWKEW 480
           VLRGN FSNRKRPGAP R +L TLN+SDDIV SVNEFYRSAILPEVT FLD E PPWKEW
Sbjct: 421 VLRGNRFSNRKRPGAPKRPDLLTLNKSDDIVKSVNEFYRSAILPEVTNFLDIERPPWKEW 480

Query: 481 VEKLDKYTSIPNEELDEVRSAWKAW 503
           VEKLDKYTSIPNE+L+EVR+AWKAW
Sbjct: 481 VEKLDKYTSIPNEQLEEVRNAWKAW 505

[Close]

BLAST of CsaV3_1G036700 vs. ExPASy Swiss-Prot
Match: O22928 (Putative tRNA pseudouridine synthase OS=Arabidopsis thaliana OX=3702 GN=At2g30320 PE=3 SV=1)

HSP 1 Score: 485.0 bits (1247), Expect = 1.1e-135
Identity = 259/508 (50.98%), Postives = 345/508 (67.91%), Query Frame = 0


Query: 1   MSVSSLRLPLSPWITKASSSCFRFPDPVFVSRTPPLRPALLHFFSSSTASTDAFSTRCAP 60
           M+VS LR+P+        S  F +P     +R   + PALL F  SS+A+    ST  +P
Sbjct: 1   MAVSFLRIPI-------PSRVFWYP-----TRLIRVTPALLRF--SSSAAFQPSSTSLSP 60

Query: 61  DQ-----LRKWQAFRKKKVVLRIGYVGTDYRGLQMQRNQLSHPTIEQELEDAIYKAGGIC 120
                    KW+++RKKKVV+RIGYVGTDYRGLQ+QR+  S  TIE ELE AIYKAGGI 
Sbjct: 61  PSSDNFLADKWESYRKKKVVIRIGYVGTDYRGLQIQRDDPSIKTIEGELEVAIYKAGGIR 120

Query: 121 DSNYGNLNKISWARSSRTDKGVHSLATTITLKMEIPGSAWIDDPCGISLADYINSYLPDN 180
           DSNYG+L+KI WARSSRTDKGVHSLAT+I+LKMEIP +AW DDP G  LA  I+ +LP+N
Sbjct: 121 DSNYGDLHKIGWARSSRTDKGVHSLATSISLKMEIPETAWKDDPQGTVLAKCISKHLPEN 180

Query: 181 IKVFGIVPAQKRFDPRKECDVRMYSYLLPAKLIGIESKLKTTEIDCHISDFKDILKSFEG 240
           I+VF ++P+ +RFDPR+EC +R YSYLLP  ++GI++   + EID HI+DF +ILK FEG
Sbjct: 181 IRVFSVLPSNRRFDPRRECTLRKYSYLLPVDVLGIKNSFTSDEIDYHITDFNEILKEFEG 240

Query: 241 DHPFHNYTVRSIYRTRIRAKQLVYALKSGKKVSPGDMSNSEFEGSDQENDTFVEGIKEPD 300
           ++PFHNYT RS YR +   K     +K      P +  + +   S+   +  +E  +E +
Sbjct: 241 EYPFHNYTQRSRYRRKSEQK-----IKQRNGRPPREPKSIKASESEFREENHIEIGEEEE 300

Query: 301 QRSPSLSVCENLTEVCSKLEDGSELLKGVRARWLHEPDEKDRIGASHFRRILYCSCGKLE 360
           ++       E+   V +   D S++    RA+WL+EPDE D+I  +HFR++  C  GKLE
Sbjct: 301 EKEVD---GESDEHVVTPDSDNSQVYS--RAKWLYEPDETDKISGAHFRKVFRCRSGKLE 360

Query: 361 TYFGCDFIEISIWGESFMLHQIRKMIATAVAVKRKLLPRDIITLSLTKFSRIVLPIAPAE 420
              G  F+EISIWGESFMLHQIRKMI TAVAVKR+LLPRDII LSL KF+RIVLP+AP+E
Sbjct: 361 NSLGFGFVEISIWGESFMLHQIRKMIGTAVAVKRELLPRDIIRLSLNKFTRIVLPLAPSE 420

Query: 421 VLVLRGNSFSNRKRPGAPMRSELFTLNESDDIVNSVNEFYRSAILPEVTKFLDTESPPWK 480
           VL+LRGNSF  R+ P  P    +    ES+++   + EFYR+ ++P+V+ FLD+E  PWK
Sbjct: 421 VLILRGNSFEVRRLPERP---GMEATGESEEVEKEIEEFYRAVMVPQVSIFLDSEKSPWK 480

Query: 481 EWVEKLDKYTSIPNEELDEVRSAWKAWK 504
           EWV+ LD+   + +EEL++VR  W+ WK
Sbjct: 481 EWVDHLDRNDGLIDEELEDVRKGWEEWK 481

[Close]

BLAST of CsaV3_1G036700 vs. ExPASy Swiss-Prot
Match: Q59S63 (tRNA pseudouridine synthase 1 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) OX=237561 GN=PUS1 PE=3 SV=2)

HSP 1 Score: 123.2 bits (308), Expect = 8.2e-27
Identity = 115/372 (30.91%), Postives = 172/372 (46.24%), Query Frame = 0


Query: 71  KKKVVLRIGYVGTDYRGLQMQRNQLSHPTIEQELEDAIYKAGGICDSNYGNLNKISWARS 130
           K+KV + +GY GT Y G+Q+Q N  +  TIE+++ DA+  AG I   N  +L K  + R+
Sbjct: 148 KRKVAVMLGYCGTGYNGMQVQ-NDPNVKTIEKDIYDAMATAGAISAENAVDLKKSGFQRA 207

Query: 131 SRTDKGVHSLATTITLKMEIPGSAWIDDPCGISLADYINSYLPDNIKVFGIVPAQKRFDP 190
           +RTDKGVH+    I+LKM       I+DP    + + IN  LP  I+++GI    K FD 
Sbjct: 208 ARTDKGVHAAGNVISLKM------IIEDP---EIINKINDLLPKQIRIWGIQRTTKGFDC 267

Query: 191 RKECDVRMYSYLLPA-KLIGIESKLKTTEIDCHISDFKDILKSFEGDHPFHNYTVRSIYR 250
           RK C  R+Y YLLP   L+  + K   +E+       K+  K  E    F +      + 
Sbjct: 268 RKCCSSRIYEYLLPTFSLLPPKPKSVLSEL------VKE--KKLENPDLFEDDQEGIDWW 327

Query: 251 TRIRAKQLVYALKSGKKVSPGDMSNSEFEGSDQENDTFVEGIKEPDQRSPSLSVCENLTE 310
             +++K     L SG      D   S ++   Q+     +   + ++R  S      L +
Sbjct: 328 ENVKSK----ILASGITQEQIDSITSSYDEQQQQQQQQQQQQADEEERDISELSFTKLIK 387

Query: 311 VCSKLEDGSELLKGVRARWLHEPDE--KDRIGASHFRRILYCSCGK--------LETYF- 370
               +E+ S     + +  L    E  K   G  +F         K        ++T   
Sbjct: 388 QIKTIENQSRRSYRISSSRLQHFREVMKQYEGTHNFHNFTVGKPFKDTSANRFMIKTIVS 447

Query: 371 ------GCDFIEISIWGESFMLHQIRKMIATAVAVKRKLLPRDIITLSLTKFSRIVLPIA 425
                 G ++I I I G+SFMLHQIRKMIA A  V R  LP  II  +  + ++I +P A
Sbjct: 448 DPFVIEGTEWISIKIHGQSFMLHQIRKMIAMAALVVRLSLPCGIIN-NFFQSTKINIPKA 496

[Close]

BLAST of CsaV3_1G036700 vs. ExPASy Swiss-Prot
Match: Q6CC39 (tRNA pseudouridine synthase 1 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) OX=284591 GN=PUS1 PE=3 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 5.0e-24
Identity = 109/405 (26.91%), Postives = 186/405 (45.93%), Query Frame = 0


Query: 71  KKKVVLRIGYVGTDYRGLQMQRNQLSHPTIEQELEDAIYKAGGICDSNYGNLNKISWARS 130
           K+KV   IGY GT Y G+Q+   Q    TIE ++  A  KAG I  +N  +  K ++ R+
Sbjct: 84  KRKVACMIGYCGTGYHGMQLNPPQ---KTIEGDIFQAFVKAGAISQNNADDPKKSAFMRA 143

Query: 131 SRTDKGVHSLATTITLKMEIPGSAWIDDPCGISLADYINSYLPDNIKVFGIVPAQKRFDP 190
           +RTDKGVH+    I+LKM I            ++ + INS+LP+ ++V+G+    K F+ 
Sbjct: 144 ARTDKGVHAAGNVISLKMIIEDE---------NIVEKINSHLPEQLRVWGVSRTNKAFEC 203

Query: 191 RKECDVRMYSYLLPA--------KLIGIESKLK--TTEIDCHISDFKDILKSFEGDHPFH 250
           RK C  R+Y YL+P           +  E  LK  T+  +     ++ +    E     +
Sbjct: 204 RKLCSSRVYEYLMPTYSFLNPRPGTVMSEKLLKDGTSPDEEGKKYWESVAADLESQGVSY 263

Query: 251 NYTVRSIYRTRIRAKQLVYALKSGKKVSPGDMSNSEFEGSDQENDTFVEGIKEPDQRSPS 310
           +  ++      I+ ++              +++ SE +   + +   +E IK  ++R   
Sbjct: 264 DEWMKRACIDEIKGEE------------TKEVAESEVKTDSKTDAATLEKIKAVERRHRE 323

Query: 311 LSVCENLTEVCSKLEDGSELLKGVRARWLHEPDEKDRIGASHFRRILYCSCGKLETYFGC 370
                   E  +K+ +  ++ +G    + +    K     S  R +   +C       G 
Sbjct: 324 EFRISG--ERLAKIREILKIYEGTH-NFHNFTLGKAFKDPSAMRTMKSLTCSDPFLIDGT 383

Query: 371 DFIEISIWGESFMLHQIRKMIA-TAVAVKRKLLPRDIITLSLTKFSRIVLPIAPAEVLVL 430
           +++ I I G+SFMLHQIRKMI+  A++V+    P+ +I  +  K +RI +P APA  L+L
Sbjct: 384 EWVSIKIHGQSFMLHQIRKMISMVALSVRCNADPQKLIPQTFEK-ARINIPKAPALGLLL 443

Query: 431 RGNSFS--NRKRPGAPMRSELFTLNESDDIVNSVNEFYRSAILPE 463
               +   N+K  G   R  +   N +D I    ++F    I  E
Sbjct: 444 ERPVYDSYNKKLQGEFGREGVHFDNWNDQIEAFKHKFIYDKIYAE 460

[Close]

BLAST of CsaV3_1G036700 vs. ExPASy Swiss-Prot
Match: Q6CWQ8 (tRNA pseudouridine synthase 1 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) OX=284590 GN=PUS1 PE=3 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 8.5e-24
Identity = 105/362 (29.01%), Postives = 171/362 (47.24%), Query Frame = 0


Query: 71  KKKVVLRIGYVGTDYRGLQMQRNQLSHPTIEQELEDAIYKAGGICDSNYGNLNKISWARS 130
           K+KV + IGY GT Y G+Q       + TIE+EL +A  +AG I  +N  +L K  + R+
Sbjct: 98  KRKVAVMIGYCGTGYHGMQYNP---PNDTIEKELFEAFVRAGAISKANSTDLKKNGFQRA 157

Query: 131 SRTDKGVHSLATTITLKMEIPGSAWIDDPCGISLADYINSYLPDNIKVFGIVPAQKRFDP 190
           +RTDKGVH+    I+LK+       I+DP    + + IN+ LPD I+V+ I    K FD 
Sbjct: 158 ARTDKGVHAGGNVISLKL------IIEDP---EVKEKINNELPDQIRVWDISRVNKAFDC 217

Query: 191 RKECDVRMYSYLLPA-KLIGIE-SKLKTTEIDCHISDFKDILKSFEGDHPFHNYTVRSIY 250
           RK C  R Y YLLP   LIG + S     EI+    +  ++++       F        +
Sbjct: 218 RKMCSSRWYEYLLPTYSLIGPKPSTYLYNEIEASKKEIPNVIQDDVESAQFW-----EAF 277

Query: 251 RTRIRAKQLVYALKSGKKVSPGDMSNSEFEGSDQENDTFVEG-----IKEPDQRSPSLSV 310
            T   +K   +  +  ++++   M    F   D+ N+T+ +      ++   +R+  +S 
Sbjct: 278 STEAESK---FTKEELEEIAAFVMPKDSF---DENNETYQKSKAFKKLEAEHKRAYRISK 337

Query: 311 --CENLTEVCSKLEDGSELLKGVRARWLHEPDEKDRIGASHFRRILYCS----CGKLETY 370
              +       + E           +  ++P       A  F + +  S     G+ +T 
Sbjct: 338 ERLDRFRSALKQYEGTFNFHNFTLGKDFNDP------SAKRFMKQITVSEPFVIGEAKT- 397

Query: 371 FGCDFIEISIWGESFMLHQIRKMIATAVAVKRKLLPRDIITLSLTKFSRIVLPIAPAEVL 420
              +++ I I G+SFMLHQIRKMI+ A  + R   P + I  +  +  +I +P APA  L
Sbjct: 398 ---EWVSIKIHGQSFMLHQIRKMISMATLITRCFSPLERIRQAYGQ-EKINIPKAPALGL 425

[Close]

BLAST of CsaV3_1G036700 vs. ExPASy Swiss-Prot
Match: Q755C8 (tRNA pseudouridine synthase 1 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) OX=284811 GN=PUS1 PE=3 SV=2)

HSP 1 Score: 104.4 bits (259), Expect = 3.9e-21
Identity = 110/360 (30.56%), Postives = 163/360 (45.28%), Query Frame = 0


Query: 71  KKKVVLRIGYVGTDYRGLQMQRNQLSHPTIEQELEDAIYKAGGICDSNYGNLNKISWARS 130
           K+KV + +GY GT Y G+Q       + TIE EL +A  KAG I  +N  +L K  + R+
Sbjct: 66  KRKVAVMVGYCGTGYHGMQYNP---PNRTIEAELFEAFVKAGAISRANSTDLKKNGFMRA 125

Query: 131 SRTDKGVHSLATTITLKMEIPGSAWIDDPCGISLADYINSYLPDNIKVFGIVPAQKRFDP 190
           +RTDKGVH+    I+LK+       I+DP   ++ D IN +LP  I+V+GI    K FD 
Sbjct: 126 ARTDKGVHAGGNVISLKL------IIEDP---AIKDKINEHLPPGIRVWGISRVNKAFDC 185

Query: 191 RKECDVRMYSYLLPA-KLIGIE--SKLKTTEIDCHISDFKDILKSFEGDHPFHNYTVRSI 250
           RK C  R Y YLLP    IG +  + L  T   C  +       S + D    +      
Sbjct: 186 RKLCGSRWYEYLLPTYSFIGPKPNTYLARTIEQCGEA------ASEKPDRDQESLDFWEA 245

Query: 251 YRTRIRAKQLVYALKSGKKVSPGDMSNSEFEGSDQENDTFVEGIKEPDQRSPSLSVCENL 310
           +R  +  K      +    V+    S  +F+    EN    + +K+  Q   +      +
Sbjct: 246 FRKAVDEK--FTQEEQDAIVNYVAPSKEDFD----ENSGLYQKVKQYKQMENAHRRSYRV 305

Query: 311 TEVCSKLEDGSELLKGVRA-----RWLHEPDEKDRIGASHFRRILYCS---CGKLETYFG 370
           +   +KL    E +K          +    D KD       + I        G+++T   
Sbjct: 306 SS--AKLARFREAMKQYLGPHNFHNYTLGKDFKDPSTVRFMKDITVSDPFVIGEMKT--- 365

Query: 371 CDFIEISIWGESFMLHQIRKMIATAVAVKRKLLPRDIITLSLTKFSRIVLPIAPAEVLVL 420
            +++ I I G+SFMLHQIRKMI+ A  V R     + I  S     +I +P APA  L+L
Sbjct: 366 -EWVSIKIHGQSFMLHQIRKMISMATLVARCNCSPERIAQSYGP-QKINIPKAPALGLLL 394

[Close]

BLAST of CsaV3_1G036700 vs. ExPASy TrEMBL
Match: A0A1S3C5W1 (putative tRNA pseudouridine synthase OS=Cucumis melo OX=3656 GN=LOC103497029 PE=3 SV=1)

HSP 1 Score: 922.2 bits (2382), Expect = 9.7e-265
Identity = 457/508 (89.96%), Postives = 475/508 (93.50%), Query Frame = 0


Query: 1   MSVSSLRLPLSPWITKASSSCFRFPDPVFVSRTPPLRPALLHFFSSSTASTDAFSTRCAP 60
           MSVSSLRLPLSPWITK+SSSCFRFP PVFV RTP LRP LL+ FSS+ ASTDAFST+CAP
Sbjct: 1   MSVSSLRLPLSPWITKSSSSCFRFPYPVFVPRTPRLRPTLLYCFSSAAASTDAFSTQCAP 60

Query: 61  DQLRKWQAFRKKKVVLRIGYVGTDYRGLQMQRNQLSHPTIEQELEDAIYKAGGICDSNYG 120
           DQLRKWQAFRKKKVVLRIGYVGTDYRGLQMQRNQLSHPTIEQELE AIYKAGGI +SNYG
Sbjct: 61  DQLRKWQAFRKKKVVLRIGYVGTDYRGLQMQRNQLSHPTIEQELEAAIYKAGGIRESNYG 120

Query: 121 NLNKISWARSSRTDKGVHSLATTITLKMEIPGSAWIDDPCGISLADYINSYLPDNIKVFG 180
           NLNKISWARSSRTDKGVHSLATTITLKMEIP SAW+ DPCGISLADYINSYLPDNIKVFG
Sbjct: 121 NLNKISWARSSRTDKGVHSLATTITLKMEIPESAWMGDPCGISLADYINSYLPDNIKVFG 180

Query: 181 IVPAQKRFDPRKECDVRMYSYLLPAKLIGIESKLKTTEIDCHISDFKDILKSFEGDHPFH 240
           IVP+Q+ FDPRKECDVR YSYLLPAKLIGIESKLKTTEIDCHISDFKDIL SFEG+HPFH
Sbjct: 181 IVPSQRSFDPRKECDVRKYSYLLPAKLIGIESKLKTTEIDCHISDFKDILNSFEGEHPFH 240

Query: 241 NYTVRSIYRTRIRAKQLV-YALKSGKKVSPGDMSNSEFEGSDQENDTFVEGIKEPDQRSP 300
           NYT+RS YRTRIRAKQ   YALKSG KVSPG+MSN EFE SD+E+DTFVEG+KEPDQ SP
Sbjct: 241 NYTIRSNYRTRIRAKQSPGYALKSGNKVSPGEMSNFEFEESDREDDTFVEGVKEPDQCSP 300

Query: 301 SLSVCENLTEVCSKLEDGSELLKGVRARWLHEPDEKDRIGASHFRRILYCSCGKLETYFG 360
           SLSVCENLTEVCSKLEDGSELLKGVRARWLHEPDEKDRIGASHFRRIL CSCGKLET FG
Sbjct: 301 SLSVCENLTEVCSKLEDGSELLKGVRARWLHEPDEKDRIGASHFRRILCCSCGKLETSFG 360

Query: 361 CDFIEISIWGESFMLHQIRKMIATAVAVKRKLLPRDIITLSLTKFSRIVLPIAPAEVLVL 420
            DFIEISIWGESFMLHQIRKMI TAVAVKRKLLPRD+I LSLTKFSRIVLPIAPAEVLVL
Sbjct: 361 YDFIEISIWGESFMLHQIRKMIGTAVAVKRKLLPRDVIALSLTKFSRIVLPIAPAEVLVL 420

Query: 421 RGNSFSNRKRPGAPMRSELFTLNESDDIVNSVNEFYRSAILPEVTKFLDTESPPWKEWVE 480
           RGNSFS RKRPG P R +L TLNESDDI+ SVNEFYRSAILPEVT+FLDTESPPWKEWVE
Sbjct: 421 RGNSFSTRKRPGVPTRPDLVTLNESDDIIKSVNEFYRSAILPEVTEFLDTESPPWKEWVE 480

Query: 481 KLDKYTSIPNEELDEVRSAWKAWKYREH 508
           KLDKYTSIPNEELDEVRSAWKAWKYR H
Sbjct: 481 KLDKYTSIPNEELDEVRSAWKAWKYRVH 508

[Close]

BLAST of CsaV3_1G036700 vs. ExPASy TrEMBL
Match: A0A0A0M0Z2 (PseudoU_synth_1 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G533680 PE=3 SV=1)

HSP 1 Score: 832.4 bits (2149), Expect = 1.0e-237
Identity = 408/408 (100.00%), Postives = 408/408 (100.00%), Query Frame = 0


Query: 100 IEQELEDAIYKAGGICDSNYGNLNKISWARSSRTDKGVHSLATTITLKMEIPGSAWIDDP 159
           IEQELEDAIYKAGGICDSNYGNLNKISWARSSRTDKGVHSLATTITLKMEIPGSAWIDDP
Sbjct: 14  IEQELEDAIYKAGGICDSNYGNLNKISWARSSRTDKGVHSLATTITLKMEIPGSAWIDDP 73

Query: 160 CGISLADYINSYLPDNIKVFGIVPAQKRFDPRKECDVRMYSYLLPAKLIGIESKLKTTEI 219
           CGISLADYINSYLPDNIKVFGIVPAQKRFDPRKECDVRMYSYLLPAKLIGIESKLKTTEI
Sbjct: 74  CGISLADYINSYLPDNIKVFGIVPAQKRFDPRKECDVRMYSYLLPAKLIGIESKLKTTEI 133

Query: 220 DCHISDFKDILKSFEGDHPFHNYTVRSIYRTRIRAKQLVYALKSGKKVSPGDMSNSEFEG 279
           DCHISDFKDILKSFEGDHPFHNYTVRSIYRTRIRAKQLVYALKSGKKVSPGDMSNSEFEG
Sbjct: 134 DCHISDFKDILKSFEGDHPFHNYTVRSIYRTRIRAKQLVYALKSGKKVSPGDMSNSEFEG 193

Query: 280 SDQENDTFVEGIKEPDQRSPSLSVCENLTEVCSKLEDGSELLKGVRARWLHEPDEKDRIG 339
           SDQENDTFVEGIKEPDQRSPSLSVCENLTEVCSKLEDGSELLKGVRARWLHEPDEKDRIG
Sbjct: 194 SDQENDTFVEGIKEPDQRSPSLSVCENLTEVCSKLEDGSELLKGVRARWLHEPDEKDRIG 253

Query: 340 ASHFRRILYCSCGKLETYFGCDFIEISIWGESFMLHQIRKMIATAVAVKRKLLPRDIITL 399
           ASHFRRILYCSCGKLETYFGCDFIEISIWGESFMLHQIRKMIATAVAVKRKLLPRDIITL
Sbjct: 254 ASHFRRILYCSCGKLETYFGCDFIEISIWGESFMLHQIRKMIATAVAVKRKLLPRDIITL 313

Query: 400 SLTKFSRIVLPIAPAEVLVLRGNSFSNRKRPGAPMRSELFTLNESDDIVNSVNEFYRSAI 459
           SLTKFSRIVLPIAPAEVLVLRGNSFSNRKRPGAPMRSELFTLNESDDIVNSVNEFYRSAI
Sbjct: 314 SLTKFSRIVLPIAPAEVLVLRGNSFSNRKRPGAPMRSELFTLNESDDIVNSVNEFYRSAI 373

Query: 460 LPEVTKFLDTESPPWKEWVEKLDKYTSIPNEELDEVRSAWKAWKYREH 508
           LPEVTKFLDTESPPWKEWVEKLDKYTSIPNEELDEVRSAWKAWKYREH
Sbjct: 374 LPEVTKFLDTESPPWKEWVEKLDKYTSIPNEELDEVRSAWKAWKYREH 421

[Close]

BLAST of CsaV3_1G036700 vs. ExPASy TrEMBL
Match: A0A6J1I156 (putative tRNA pseudouridine synthase OS=Cucurbita maxima OX=3661 GN=LOC111469569 PE=3 SV=1)

HSP 1 Score: 810.8 bits (2093), Expect = 3.1e-231
Identity = 409/505 (80.99%), Postives = 440/505 (87.13%), Query Frame = 0


Query: 1   MSVSSLRLPLSPWITKASSSCFRFPDPVFVSRTPPLRPALLHFFSSSTASTDAFSTRCAP 60
           M+VSSLR PLSPW TK S  CFRFP P FVS T  LRP LL   SSSTASTDA ST+CAP
Sbjct: 1   MAVSSLRFPLSPWATKTSFPCFRFPYPNFVSWTSRLRPRLLCCSSSSTASTDALSTQCAP 60

Query: 61  DQLRKWQAFRKKKVVLRIGYVGTDYRGLQMQRNQLSHPTIEQELEDAIYKAGGICDSNYG 120
           DQLRKW+AFRKKKVV+RIGYVGTDYRGLQMQR Q SHPTIEQELE AIYKAGGI +SNYG
Sbjct: 61  DQLRKWEAFRKKKVVMRIGYVGTDYRGLQMQREQSSHPTIEQELEAAIYKAGGIRESNYG 120

Query: 121 NLNKISWARSSRTDKGVHSLATTITLKMEIPGSAWIDDPCGISLADYINSYLPDNIKVFG 180
           NLNKISWARSSRTDKGVHSLATTITLKMEIP SAW+ DPCGI LA+YIN YLP+NIKVFG
Sbjct: 121 NLNKISWARSSRTDKGVHSLATTITLKMEIPDSAWMGDPCGILLANYINFYLPENIKVFG 180

Query: 181 IVPAQKRFDPRKECDVRMYSYLLPAKLIGIESKLKTTEIDCHISDFKDILKSFEGDHPFH 240
           IVP+Q+ FDPR+ECDVR Y+YLLPAKLIGIESKL TTEID HIS+FKDIL SF+G+HPFH
Sbjct: 181 IVPSQRSFDPRRECDVRKYTYLLPAKLIGIESKLTTTEIDYHISEFKDILNSFQGEHPFH 240

Query: 241 NYTVRSIYRTRIRAKQLV-YALKSGKKVSPGDMSNSEFEGSDQENDTFV-EGIKEPDQRS 300
           NYT+RS YRTRIRA Q   Y  KSG  VS  D+SNSEFE SD END FV  GIKEP+Q S
Sbjct: 241 NYTIRSKYRTRIRANQSPGYVHKSGDGVSSSDLSNSEFEESDGENDIFVGGGIKEPNQHS 300

Query: 301 PSLSVC-ENLTEVCSKLEDGSELLKGVRARWLHEPDEKDRIGASHFRRILYCSCGKLETY 360
           PSLS C EN  EVCSKL +GSEL +GVRARWLHEPDE+DRIGASHFR+IL CSCGKLET 
Sbjct: 301 PSLSGCNENTFEVCSKLGNGSELPQGVRARWLHEPDERDRIGASHFRKILCCSCGKLETS 360

Query: 361 FGCDFIEISIWGESFMLHQIRKMIATAVAVKRKLLPRDIITLSLTKFSRIVLPIAPAEVL 420
            G DF+EISIWGESFMLHQIRKM+ TA+AVKRKLLPRDII LSL+KFSRIVLPIAPAEVL
Sbjct: 361 LGYDFVEISIWGESFMLHQIRKMVGTAIAVKRKLLPRDIIALSLSKFSRIVLPIAPAEVL 420

Query: 421 VLRGNSFSNRKRPGAPMRSELFTLNESDDIVNSVNEFYRSAILPEVTKFLDTESPPWKEW 480
           VLRGN FSNRKRPGAP R +L TLN+SDDIV SVNEFYRSAILPEVT FLD E PPWKEW
Sbjct: 421 VLRGNRFSNRKRPGAPKRPDLLTLNKSDDIVKSVNEFYRSAILPEVTNFLDIERPPWKEW 480

Query: 481 VEKLDKYTSIPNEELDEVRSAWKAW 503
           VEKLDKYTSIPNE+L+EVR+AWKAW
Sbjct: 481 VEKLDKYTSIPNEQLEEVRNAWKAW 505

[Close]

BLAST of CsaV3_1G036700 vs. ExPASy TrEMBL
Match: A0A6J1HM83 (putative tRNA pseudouridine synthase OS=Cucurbita moschata OX=3662 GN=LOC111464888 PE=3 SV=1)

HSP 1 Score: 806.2 bits (2081), Expect = 7.8e-230
Identity = 405/504 (80.36%), Postives = 436/504 (86.51%), Query Frame = 0


Query: 1   MSVSSLRLPLSPWITKASSSCFRFPDPVFVSRTPPLRPALLHFFSSSTASTDAFSTRCAP 60
           M+VSSLR PLSPW  K S  CFRFP P FVS T  L P LL   SSSTASTDA ST+CAP
Sbjct: 1   MAVSSLRFPLSPWANKTSFPCFRFPYPNFVSWTSRLSPRLLCCSSSSTASTDALSTQCAP 60

Query: 61  DQLRKWQAFRKKKVVLRIGYVGTDYRGLQMQRNQLSHPTIEQELEDAIYKAGGICDSNYG 120
           DQLRKW+AFRKKKVV+RIGYVGTDYRGLQMQR Q SHPTIEQELE AIYKAGGI +SNYG
Sbjct: 61  DQLRKWEAFRKKKVVMRIGYVGTDYRGLQMQREQSSHPTIEQELEAAIYKAGGIRESNYG 120

Query: 121 NLNKISWARSSRTDKGVHSLATTITLKMEIPGSAWIDDPCGISLADYINSYLPDNIKVFG 180
           +LNKISWARSSRTDKGVHSLATTITLKMEIP SAW+ DPCGI LA+YIN YLP+NI+VFG
Sbjct: 121 DLNKISWARSSRTDKGVHSLATTITLKMEIPDSAWMGDPCGILLANYINFYLPENIRVFG 180

Query: 181 IVPAQKRFDPRKECDVRMYSYLLPAKLIGIESKLKTTEIDCHISDFKDILKSFEGDHPFH 240
           IVP+Q+ FDPR+ECDVR Y+YLLPAKLIGIESKL TTEID HIS+FKDIL SF+G+HPFH
Sbjct: 181 IVPSQRSFDPRRECDVRKYTYLLPAKLIGIESKLTTTEIDYHISEFKDILNSFQGEHPFH 240

Query: 241 NYTVRSIYRTRIRAKQLV-YALKSGKKVSPGDMSNSEFEGSDQENDTFVEGIKEPDQRSP 300
           NYT+RS YRTRIR  Q   Y  KSG  VS  D+SNSEFE SD END FV GIKEP+Q SP
Sbjct: 241 NYTIRSKYRTRIRTNQSPGYVHKSGDGVSSSDLSNSEFEESDGENDIFVGGIKEPNQHSP 300

Query: 301 SLS-VCENLTEVCSKLEDGSELLKGVRARWLHEPDEKDRIGASHFRRILYCSCGKLETYF 360
           SLS   EN  EVCSKL +GSEL +GVRARWLHEPDEKDRIGASHFR+ILYCSCGKLET  
Sbjct: 301 SLSGSYENTFEVCSKLGNGSELPQGVRARWLHEPDEKDRIGASHFRKILYCSCGKLETSL 360

Query: 361 GCDFIEISIWGESFMLHQIRKMIATAVAVKRKLLPRDIITLSLTKFSRIVLPIAPAEVLV 420
           G DF+EISIWGESFMLHQIRKM+ TA+AVKRKLLPRDII LSL+KFSRIVLPIAPAEVLV
Sbjct: 361 GYDFVEISIWGESFMLHQIRKMVGTAIAVKRKLLPRDIIALSLSKFSRIVLPIAPAEVLV 420

Query: 421 LRGNSFSNRKRPGAPMRSELFTLNESDDIVNSVNEFYRSAILPEVTKFLDTESPPWKEWV 480
           LRGN FSNRKRPGAP R +L TLNES DIV SVNEFYRSAILPEVT FLD E PPWKEWV
Sbjct: 421 LRGNRFSNRKRPGAPKRPDLLTLNESHDIVKSVNEFYRSAILPEVTNFLDIERPPWKEWV 480

Query: 481 EKLDKYTSIPNEELDEVRSAWKAW 503
           EKLDKYTSIPNE+L+EVR+AWKAW
Sbjct: 481 EKLDKYTSIPNEQLEEVRNAWKAW 504

[Close]

BLAST of CsaV3_1G036700 vs. ExPASy TrEMBL
Match: A0A6J1DMV6 (putative tRNA pseudouridine synthase isoform X2 OS=Momordica charantia OX=3673 GN=LOC111022025 PE=3 SV=1)

HSP 1 Score: 793.1 bits (2047), Expect = 6.8e-226
Identity = 398/505 (78.81%), Postives = 436/505 (86.34%), Query Frame = 0


Query: 1   MSVSSLRLPLSPWITKASSSCFRFPDPVFVSRTPPLRPALLHFFSSSTASTDAFSTRCAP 60
           M+VSSLR PLSPW TK SS+CFR P   FVSR+P LRP LL   SS +ASTDA STRCAP
Sbjct: 1   MAVSSLRFPLSPW-TKTSSTCFRLPYIAFVSRSPHLRPRLLCCCSSPSASTDASSTRCAP 60

Query: 61  DQLRKWQAFRKKKVVLRIGYVGTDYRGLQMQRNQLSHPTIEQELEDAIYKAGGICDSNYG 120
           DQLR W+AFRKKKVV+RIGY GTDYRGLQMQR Q SHPTIEQELE AI+KAGGI DSNYG
Sbjct: 61  DQLRTWEAFRKKKVVMRIGYAGTDYRGLQMQREQQSHPTIEQELEAAIFKAGGIRDSNYG 120

Query: 121 NLNKISWARSSRTDKGVHSLATTITLKMEIPGSAWIDDPCGISLADYINSYLPDNIKVFG 180
           NL KISWARSSRTDKGVHSLATTI+LKMEIP +AW+ DPCGI LA+YIN YLPDNIKVFG
Sbjct: 121 NLYKISWARSSRTDKGVHSLATTISLKMEIPENAWMGDPCGILLANYINFYLPDNIKVFG 180

Query: 181 IVPAQKRFDPRKECDVRMYSYLLPAKLIGIESKLKTTEIDCHISDFKDILKSFEGDHPFH 240
           IVP+Q+ FDPR+ECDVR YSYLLPAKLIGIESK  TTEID HIS+FKDIL SF+G+HPFH
Sbjct: 181 IVPSQRSFDPRRECDVRKYSYLLPAKLIGIESKFNTTEIDHHISEFKDILNSFQGEHPFH 240

Query: 241 NYTVRSIYRTRIRAKQLV-YALKSGKKVSPGDMSNSEFEGSDQENDTFVEGIKEPDQRSP 300
           NYT+RS YR  IRA+Q   Y   SG++VSP  MSNS FE SD E++ FVEG+K P+Q +P
Sbjct: 241 NYTIRSKYRKTIRARQSPGYGHNSGEEVSPSGMSNSGFEESDSEDNFFVEGVKGPNQHAP 300

Query: 301 SLSV-CENLTEVCSKLEDGSELLKGVRARWLHEPDEKDRIGASHFRRILYCSCGKLETYF 360
            LSV CE+  EVCSKL +GSEL KGVRARWLHEPDEKDRIGASHFR+IL CSCGKLET  
Sbjct: 301 RLSVCCEDPVEVCSKLGNGSELQKGVRARWLHEPDEKDRIGASHFRKILCCSCGKLETSL 360

Query: 361 GCDFIEISIWGESFMLHQIRKMIATAVAVKRKLLPRDIITLSLTKFSRIVLPIAPAEVLV 420
           G DF+EISIWGESFMLHQIRKM+ TAVAVKRKLLPRDII LSLTKFSRIVLPIAPAEVLV
Sbjct: 361 GYDFVEISIWGESFMLHQIRKMVGTAVAVKRKLLPRDIIALSLTKFSRIVLPIAPAEVLV 420

Query: 421 LRGNSFSNRKRPGAPMRSELFTLNESDDIVNSVNEFYRSAILPEVTKFLDTESPPWKEWV 480
           LRGNSFSN KRPGAP R +L TLN+SDDI+ SV+EFYRSAILPE+T FLDTE  PW EWV
Sbjct: 421 LRGNSFSNGKRPGAPKRPDLLTLNKSDDIIKSVDEFYRSAILPELTNFLDTEKAPWNEWV 480

Query: 481 EKLDKYTSIPNEELDEVRSAWKAWK 504
           EKLDKYTSIPNE+LDEVR+AWKAWK
Sbjct: 481 EKLDKYTSIPNEQLDEVRNAWKAWK 504

[Close]

BLAST of CsaV3_1G036700 vs. TAIR 10
Match: AT2G30320.1 (Pseudouridine synthase family protein )

HSP 1 Score: 485.0 bits (1247), Expect = 7.6e-137
Identity = 259/508 (50.98%), Postives = 345/508 (67.91%), Query Frame = 0


Query: 1   MSVSSLRLPLSPWITKASSSCFRFPDPVFVSRTPPLRPALLHFFSSSTASTDAFSTRCAP 60
           M+VS LR+P+        S  F +P     +R   + PALL F  SS+A+    ST  +P
Sbjct: 1   MAVSFLRIPI-------PSRVFWYP-----TRLIRVTPALLRF--SSSAAFQPSSTSLSP 60

Query: 61  DQ-----LRKWQAFRKKKVVLRIGYVGTDYRGLQMQRNQLSHPTIEQELEDAIYKAGGIC 120
                    KW+++RKKKVV+RIGYVGTDYRGLQ+QR+  S  TIE ELE AIYKAGGI 
Sbjct: 61  PSSDNFLADKWESYRKKKVVIRIGYVGTDYRGLQIQRDDPSIKTIEGELEVAIYKAGGIR 120

Query: 121 DSNYGNLNKISWARSSRTDKGVHSLATTITLKMEIPGSAWIDDPCGISLADYINSYLPDN 180
           DSNYG+L+KI WARSSRTDKGVHSLAT+I+LKMEIP +AW DDP G  LA  I+ +LP+N
Sbjct: 121 DSNYGDLHKIGWARSSRTDKGVHSLATSISLKMEIPETAWKDDPQGTVLAKCISKHLPEN 180

Query: 181 IKVFGIVPAQKRFDPRKECDVRMYSYLLPAKLIGIESKLKTTEIDCHISDFKDILKSFEG 240
           I+VF ++P+ +RFDPR+EC +R YSYLLP  ++GI++   + EID HI+DF +ILK FEG
Sbjct: 181 IRVFSVLPSNRRFDPRRECTLRKYSYLLPVDVLGIKNSFTSDEIDYHITDFNEILKEFEG 240

Query: 241 DHPFHNYTVRSIYRTRIRAKQLVYALKSGKKVSPGDMSNSEFEGSDQENDTFVEGIKEPD 300
           ++PFHNYT RS YR +   K     +K      P +  + +   S+   +  +E  +E +
Sbjct: 241 EYPFHNYTQRSRYRRKSEQK-----IKQRNGRPPREPKSIKASESEFREENHIEIGEEEE 300

Query: 301 QRSPSLSVCENLTEVCSKLEDGSELLKGVRARWLHEPDEKDRIGASHFRRILYCSCGKLE 360
           ++       E+   V +   D S++    RA+WL+EPDE D+I  +HFR++  C  GKLE
Sbjct: 301 EKEVD---GESDEHVVTPDSDNSQVYS--RAKWLYEPDETDKISGAHFRKVFRCRSGKLE 360

Query: 361 TYFGCDFIEISIWGESFMLHQIRKMIATAVAVKRKLLPRDIITLSLTKFSRIVLPIAPAE 420
              G  F+EISIWGESFMLHQIRKMI TAVAVKR+LLPRDII LSL KF+RIVLP+AP+E
Sbjct: 361 NSLGFGFVEISIWGESFMLHQIRKMIGTAVAVKRELLPRDIIRLSLNKFTRIVLPLAPSE 420

Query: 421 VLVLRGNSFSNRKRPGAPMRSELFTLNESDDIVNSVNEFYRSAILPEVTKFLDTESPPWK 480
           VL+LRGNSF  R+ P  P    +    ES+++   + EFYR+ ++P+V+ FLD+E  PWK
Sbjct: 421 VLILRGNSFEVRRLPERP---GMEATGESEEVEKEIEEFYRAVMVPQVSIFLDSEKSPWK 480

Query: 481 EWVEKLDKYTSIPNEELDEVRSAWKAWK 504
           EWV+ LD+   + +EEL++VR  W+ WK
Sbjct: 481 EWVDHLDRNDGLIDEELEDVRKGWEEWK 481

[Close]

BLAST of CsaV3_1G036700 vs. TAIR 10
Match: AT1G20370.1 (Pseudouridine synthase family protein )

HSP 1 Score: 124.8 bits (312), Expect = 2.0e-28
Identity = 108/403 (26.80%), Postives = 177/403 (43.92%), Query Frame = 0


Query: 64  RKWQAFRKKKVVLRIGYVGTDYRGLQMQRNQLSHPTIEQELEDAIYKAGGICDSNYGNLN 123
           R+   +R++KV +   + G  Y+G  MQ+N     TIE ELE+A++ AG + D++     
Sbjct: 50  RRAPKYRRRKVAIVFAFCGVGYQG--MQKNP-GAKTIEGELEEALFHAGAVPDADRNKPR 109

Query: 124 KISWARSSRTDKGVHSLATTITLKMEIPGSAWIDDPCGISLADYINSYLPDNIKVFGIVP 183
              WARS+RTDKGV ++   ++      G  ++D P      + +NS LPD I+VFG   
Sbjct: 110 NYEWARSARTDKGVSAVGQVVS------GRFYVDPP---GFVERLNSKLPDQIRVFGYKR 169

Query: 184 AQKRFDPRKECDVRMYSYLLPA----KLIGIESKLKTTE--------IDCHISDFKDIL- 243
               F  +K CD R Y YL+P       +  E+++  T+        ++C    +K  L 
Sbjct: 170 VAPSFSSKKFCDRRRYVYLIPVFALDPCVHGEAEMVRTDLGYEYVKCVECSEKGYKIPLG 229

Query: 244 -----------KSFEGDHPFHNYTVRSIYRTRIRAKQLVYALKSGKKVSPGDMSNSEFEG 303
                      KS E      + T  +     I A      L S    +  ++++   +G
Sbjct: 230 VMGKDTDCCDTKSLEIQSDISSSTCDA-----IGADVKCETLSSSVPSAENNLNSEVLDG 289

Query: 304 SDQENDTFVEGIKEPDQRSPSLSVCENLTEVCSKLEDGSELLKGVRARWLHEPDEKDR-- 363
           +D         +     ++  +     L +V     +G ++ K   +++ +   EK+R  
Sbjct: 290 AD---------VSALSSKAEGMEESNTLAKVEMNNGEGEDMTKS-ESKFCYGEKEKERFN 349

Query: 364 ------IGASHF---------------RRILYCSCGKLETYFGCDFIEISIWGESFMLHQ 420
                 +G+ +F               R IL  +   +    G DF++  + G+SFMLHQ
Sbjct: 350 RILSYYVGSHNFHNFTTRTKAADPAANRYILSFNANTVINLDGKDFVKCEVVGQSFMLHQ 409

[Close]

BLAST of CsaV3_1G036700 vs. TAIR 10
Match: AT1G76120.1 (Pseudouridine synthase family protein )

HSP 1 Score: 114.4 bits (285), Expect = 2.7e-25
Identity = 104/388 (26.80%), Postives = 169/388 (43.56%), Query Frame = 0


Query: 72  KKVVLRIGYVGTDYRGLQMQRNQLSHPTIEQELEDAIYKAGGICDSNYGNLNKISWARSS 131
           +KV +   + G  Y+G  MQ+N     TIE ELE+A++ AG + +S  G      +ARS+
Sbjct: 22  QKVAIIFAFCGVGYQG--MQKNP-GAKTIEGELEEALFHAGAVPESIRGKPKLYDFARSA 81

Query: 132 RTDKGVHSLATTITLKMEIPGSAWIDDPCGISLADYINSYLPDNIKVFGIVPAQKRFDPR 191
           RTDKGV ++        ++    +I DP G    + +NS LP+ I++FG       F  +
Sbjct: 82  RTDKGVSAVG-------QVVSGRFIVDPLG--FVNRLNSNLPNQIRIFGYKHVTPSFSSK 141

Query: 192 KECDVRMYSYLLPAKLIGIESKLKTTEIDCHISDFKDILKSFEGDHPFHNYTVRSIYRTR 251
           K CD R Y YLLP   +   S      +   +   ++ +K FE                 
Sbjct: 142 KFCDRRRYVYLLPVFALDPISHRDRETVMASLGPGEEYVKCFECSE-------------- 201

Query: 252 IRAKQLVYALKSGKKVSPGDMSNSEFEGSDQENDTFV--EGIKEPDQRSPSLSVCENLTE 311
            R +++   L    K +     + +F+     N++      IK     S    +C    E
Sbjct: 202 -RGRKIPPGLVGKWKGTNFGTKSLDFQSDISSNNSSALRSDIKIEALSSNLAGLCSVDVE 261

Query: 312 VCSKLEDGSELLKG-----VRARWLHEPDEKDR--------IGASHF------------- 371
           V    ED  +L        V++++ +   EK+R        +G+ +F             
Sbjct: 262 VGRIQEDSCKLNTNSSETKVKSKFCYGEKEKERFSRILSCYVGSYNFHNFTTRTKADDPT 321

Query: 372 --RRILYCSCGKLETYFGCDFIEISIWGESFMLHQIRKMIATAVAVKRKLLPRDIITLSL 430
             R+I+  +   +    G DFI+  + G+SFMLHQIRKM+  AVA+ R      +I  + 
Sbjct: 322 ANRQIISFTANTVINLDGIDFIKCEVLGKSFMLHQIRKMMGLAVAIMRNCASESLIQSAF 381

[Close]

BLAST of CsaV3_1G036700 vs. TAIR 10
Match: AT1G76120.2 (Pseudouridine synthase family protein )

HSP 1 Score: 106.3 bits (264), Expect = 7.4e-23
Identity = 96/362 (26.52%), Postives = 157/362 (43.37%), Query Frame = 0


Query: 72  KKVVLRIGYVGTDYRGLQMQRNQLSHPTIEQELEDAIYKAGGICDSNYGNLNKISWARSS 131
           +KV +   + G  Y+G  MQ+N     TIE ELE+A++ AG + +S  G      +ARS+
Sbjct: 22  QKVAIIFAFCGVGYQG--MQKNP-GAKTIEGELEEALFHAGAVPESIRGKPKLYDFARSA 81

Query: 132 RTDKGVHSLATTITLKMEIPGSAWIDDPCGISLADYINSYLPDNIKVFGIVPAQKRFDPR 191
           RTDKGV ++        ++    +I DP G    + +NS LP+ I++FG       F  +
Sbjct: 82  RTDKGVSAVG-------QVVSGRFIVDPLG--FVNRLNSNLPNQIRIFGYKHVTPSFSSK 141

Query: 192 KECDVRMYSYLLPAKLIGIESKLKTTEIDCHISDFKDILKSFEGDHPFHNYTVRSIYRTR 251
           K CD R Y YLLP   +   S      +   +   ++ +K FE                 
Sbjct: 142 KFCDRRRYVYLLPVFALDPISHRDRETVMASLGPGEEYVKCFECSE-------------- 201

Query: 252 IRAKQLVYALKSGKKVSPGDMSNSEFEGSDQENDTFV--EGIKEPDQRSPSLSVCENLTE 311
            R +++   L    K +     + +F+     N++      IK     S    +C    E
Sbjct: 202 -RGRKIPPGLVGKWKGTNFGTKSLDFQSDISSNNSSALRSDIKIEALSSNLAGLCSVDVE 261

Query: 312 VCSKLEDGSELLKG-----VRARWLHEPDEKDR--------IGASHF------------- 371
           V    ED  +L        V++++ +   EK+R        +G+ +F             
Sbjct: 262 VGRIQEDSCKLNTNSSETKVKSKFCYGEKEKERFSRILSCYVGSYNFHNFTTRTKADDPT 321

Query: 372 --RRILYCSCGKLETYFGCDFIEISIWGESFMLHQIRKMIATAVAVKRKLLPRDIITLSL 404
             R+I+  +   +    G DFI+  + G+SFMLHQIRKM+  AVA+ R      +I  + 
Sbjct: 322 ANRQIISFTANTVINLDGIDFIKCEVLGKSFMLHQIRKMMGLAVAIMRNCASESLIQSAF 356

[Close]

BLAST of CsaV3_1G036700 vs. TAIR 10
Match: AT1G34150.1 (Pseudouridine synthase family protein )

HSP 1 Score: 57.0 bits (136), Expect = 5.1e-08
Identity = 52/204 (25.49%), Postives = 81/204 (39.71%), Query Frame = 0


Query: 71  KKKVVLRIGYVGTDYRGLQMQRNQLSHPTIEQELEDAIYKAGGICDSNYGNLNKISWARS 130
           K+ V L+I Y G  + G   +      P+IE E+  A+ +   +     G+     ++R 
Sbjct: 89  KRYVALKIMYFGKRFYGFSAEAQM--EPSIESEVFKALERTRLL----VGDKKDSCYSRC 148

Query: 131 SRTDKGVHSLATTITLKMEIPGSAWIDDPCGISLA------------DYI---NSYLPDN 190
            RTDKGV S    I L +     + +  P G S A            DY+   N  LPD+
Sbjct: 149 GRTDKGVSSTGQVIALFLR----SRLKSPPGDSKAQVNGRTGERPEYDYVRVLNRALPDD 208

Query: 191 IKVFGIVPAQKRFDPRKECDVRMYSYLLPAKLIGIESKLKTTEIDCHISDFKDILKSFEG 250
           I+V G  PA   F  R  C  R Y Y    + + + +            DF    K F G
Sbjct: 209 IRVIGWSPAPIDFHARFSCYAREYKYFFWRQNLNLSA-----------MDFAG--KKFIG 268

Query: 251 DHPFHNYTVRSIYRTRIRAKQLVY 260
           +H F N+    +       +++ +
Sbjct: 269 EHDFRNFCKMDVANVHCYTRRVTF 269

The following BLAST results are available for this feature:

BLAST of CsaV3_1G036700 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004145230.1	1.4e-297	100.00	putative tRNA pseudouridine synthase isoform X2 [Cucumis sativus] >KGN66289.2 hy...	[more]
XP_031742713.1	1.2e-293	96.20	putative tRNA pseudouridine synthase isoform X1 [Cucumis sativus]	[more]
XP_008457308.1	2.0e-264	89.96	PREDICTED: putative tRNA pseudouridine synthase [Cucumis melo]	[more]
XP_038894774.1	5.3e-241	83.07	putative tRNA pseudouridine synthase isoform X1 [Benincasa hispida]	[more]
XP_022970646.1	6.5e-231	80.99	putative tRNA pseudouridine synthase [Cucurbita maxima]	[more]

BLAST of CsaV3_1G036700 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O22928	1.1e-135	50.98	Putative tRNA pseudouridine synthase OS=Arabidopsis thaliana OX=3702 GN=At2g3032...	[more]
Q59S63	8.2e-27	30.91	tRNA pseudouridine synthase 1 OS=Candida albicans (strain SC5314 / ATCC MYA-2876...	[more]
Q6CC39	5.0e-24	26.91	tRNA pseudouridine synthase 1 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) O...	[more]
Q6CWQ8	8.5e-24	29.01	tRNA pseudouridine synthase 1 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 23...	[more]
Q755C8	3.9e-21	30.56	tRNA pseudouridine synthase 1 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51...	[more]

BLAST of CsaV3_1G036700 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3C5W1	9.7e-265	89.96	putative tRNA pseudouridine synthase OS=Cucumis melo OX=3656 GN=LOC103497029 PE=...	[more]
A0A0A0M0Z2	1.0e-237	100.00	PseudoU_synth_1 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G53...	[more]
A0A6J1I156	3.1e-231	80.99	putative tRNA pseudouridine synthase OS=Cucurbita maxima OX=3661 GN=LOC111469569...	[more]
A0A6J1HM83	7.8e-230	80.36	putative tRNA pseudouridine synthase OS=Cucurbita moschata OX=3662 GN=LOC1114648...	[more]
A0A6J1DMV6	6.8e-226	78.81	putative tRNA pseudouridine synthase isoform X2 OS=Momordica charantia OX=3673 G...	[more]

BLAST of CsaV3_1G036700 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G30320.1	7.6e-137	50.98	Pseudouridine synthase family protein	[more]
AT1G20370.1	2.0e-28	26.80	Pseudouridine synthase family protein	[more]
AT1G76120.1	2.7e-25	26.80	Pseudouridine synthase family protein	[more]
AT1G76120.2	7.4e-23	26.52	Pseudouridine synthase family protein	[more]
AT1G34150.1	5.1e-08	25.49	Pseudouridine synthase family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR020097	Pseudouridine synthase I, TruA, alpha/beta domain	PFAM	PF01416	PseudoU_synth_1	coord: 329..419 e-value: 1.7E-6 score: 28.5
IPR020094	Pseudouridine synthase TruA/RsuA/RluB/E/F, N-terminal	GENE3D	3.30.70.580		coord: 63..194 e-value: 2.5E-31 score: 110.2
IPR020095	Pseudouridine synthase I, TruA, C-terminal	GENE3D	3.30.70.660		coord: 195..491 e-value: 2.0E-33 score: 117.6
None	No IPR available	PIRSR	PIRSR001430-2	PIRSR001430-2	coord: 124..249 e-value: 1.3E-15 score: 55.5
None	No IPR available	PANTHER	PTHR11142:SF21	TRNA PSEUDOURIDINE SYNTHASE	coord: 45..502
IPR001406	Pseudouridine synthase I, TruA	PANTHER	PTHR11142	PSEUDOURIDYLATE SYNTHASE	coord: 45..502
IPR041708	Pseudouridine synthase PUS1/ PUS2-like	CDD	cd02568	PseudoU_synth_PUS1_PUS2	coord: 76..424 e-value: 1.24187E-79 score: 246.756
IPR020103	Pseudouridine synthase, catalytic domain superfamily	SUPERFAMILY	55120	Pseudouridine synthase	coord: 71..251
IPR020103	Pseudouridine synthase, catalytic domain superfamily	SUPERFAMILY	55120	Pseudouridine synthase	coord: 340..426

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_1G036700.1	CsaV3_1G036700.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0001522	pseudouridine synthesis
biological_process	GO:0009451	RNA modification
biological_process	GO:0031119	tRNA pseudouridine synthesis
molecular_function	GO:0009982	pseudouridine synthase activity
molecular_function	GO:0003723	RNA binding