CsaV3_1G036450 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_1G036450
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	basic leucine zipper 19-like
Location	chr1: 22367103 .. 22367458 (+)
RNA-Seq Expression	CsaV3_1G036450
Synteny	CsaV3_1G036450

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGATTATCATTTGCTTCAAAATCAAAACCATCCTCCATGCAACTTCCAGGACCTAATGGAACTGTGTTCGGTAAGTACTATTTCTACTACTCCGCCGGTTACGATCGTTCCTGACAACCGTCGTTTAGTCATCAACAATAATTCGGTGTCGGACTGGCGGAGATCCTTTGTGATTGGTTGCTCGAGGGAAGATGACGAACGGAGGAGGCCGGCAGTGCCGCTGCCTCCTTTTGGTGCTGGAGAGCTGAGCTCTGGTGACGGGTTGGGGAATGTCGACGGCAGAAATAATTCGGAGCAGATCTTGTATGGTCGTAATATTGACCCCAACATGGATCCAAGAAAACTCAAACG

mRNA sequence

ATGGAAGATTATCATTTGCTTCAAAATCAAAACCATCCTCCATGCAACTTCCAGGACCTAATGGAACTGTGTTCGGTAAGTACTATTTCTACTACTCCGCCGGTTACGATCGTTCCTGACAACCGTCGTTTAGTCATCAACAATAATTCGGTGTCGGACTGGCGGAGATCCTTTGTGATTGGTTGCTCGAGGGAAGATGACGAACGGAGGAGGCCGGCAGTGCCGCTGCCTCCTTTTGGTGCTGGAGAGCTGAGCTCTGGTGACGGGTTGGGGAATGTCGACGGCAGAAATAATTCGGAGCAGATCTTGTATGGTCGTAATATTGACCCCAACATGGATCCAAGAAAACTCAAACG

Coding sequence (CDS)

ATGGAAGATTATCATTTGCTTCAAAATCAAAACCATCCTCCATGCAACTTCCAGGACCTAATGGAACTGTGTTCGGTAAGTACTATTTCTACTACTCCGCCGGTTACGATCGTTCCTGACAACCGTCGTTTAGTCATCAACAATAATTCGGTGTCGGACTGGCGGAGATCCTTTGTGATTGGTTGCTCGAGGGAAGATGACGAACGGAGGAGGCCGGCAGTGCCGCTGCCTCCTTTTGGTGCTGGAGAGCTGAGCTCTGGTGACGGGTTGGGGAATGTCGACGGCAGAAATAATTCGGAGCAGATCTTGTATGGTCGTAATATTGACCCCAACATGGATCCAAGAAAACTCAAACG

Protein sequence

MEDYHLLQNQNHPPCNFQDLMELCSVSTISTTPPVTIVPDNRRLVINNNSVSDWRRSFVIGCSREDDERRRPAVPLPPFGAGELSSGDGLGNVDGRNNSEQILYGRNIDPNMDPRKLKX

Homology

[Close]

BLAST of CsaV3_1G036450 vs. NCBI nr
Match: KAE8653289.1 (hypothetical protein Csa_023232, partial [Cucumis sativus])

HSP 1 Score: 248.4 bits (633), Expect = 3.0e-62
Identity = 118/118 (100.00%), Postives = 118/118 (100.00%), Query Frame = 0


Query: 1   MEDYHLLQNQNHPPCNFQDLMELCSVSTISTTPPVTIVPDNRRLVINNNSVSDWRRSFVI 60
           MEDYHLLQNQNHPPCNFQDLMELCSVSTISTTPPVTIVPDNRRLVINNNSVSDWRRSFVI
Sbjct: 1   MEDYHLLQNQNHPPCNFQDLMELCSVSTISTTPPVTIVPDNRRLVINNNSVSDWRRSFVI 60

Query: 61  GCSREDDERRRPAVPLPPFGAGELSSGDGLGNVDGRNNSEQILYGRNIDPNMDPRKLK 119
           GCSREDDERRRPAVPLPPFGAGELSSGDGLGNVDGRNNSEQILYGRNIDPNMDPRKLK
Sbjct: 61  GCSREDDERRRPAVPLPPFGAGELSSGDGLGNVDGRNNSEQILYGRNIDPNMDPRKLK 118

[Close]

BLAST of CsaV3_1G036450 vs. NCBI nr
Match: KAA0060024.1 (basic leucine zipper 34-like [Cucumis melo var. makuwa] >TYJ97281.1 basic leucine zipper 34-like [Cucumis melo var. makuwa])

HSP 1 Score: 218.4 bits (555), Expect = 3.3e-53
Identity = 107/119 (89.92%), Postives = 112/119 (94.12%), Query Frame = 0


Query: 1   MEDYHLLQNQNHPPCNFQDLMELCSVSTISTTPPVTIVPDNRRLVINNNSVSDWRRSFVI 60
           MEDY+LLQNQNHPPCNFQD+MELCSVST STTPPVTI PDNR LV+ NNSVSDWRRSFVI
Sbjct: 1   MEDYNLLQNQNHPPCNFQDIMELCSVSTYSTTPPVTIRPDNRCLVV-NNSVSDWRRSFVI 60

Query: 61  GCSREDDERRRPAVPLPPFGAGELSS-GDGLGNVDGRNNSEQILYGRNIDPNMDPRKLK 119
           GCSRED+ERRRP VPL PFGAGE+SS GDGLGNVDGRNNSEQILYGRNIDPNMDPRKLK
Sbjct: 61  GCSREDEERRRPTVPLAPFGAGEMSSGGDGLGNVDGRNNSEQILYGRNIDPNMDPRKLK 118

[Close]

BLAST of CsaV3_1G036450 vs. NCBI nr
Match: XP_011648516.1 (basic leucine zipper 34 [Cucumis sativus])

HSP 1 Score: 203.4 bits (516), Expect = 1.1e-48
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 0


Query: 21  MELCSVSTISTTPPVTIVPDNRRLVINNNSVSDWRRSFVIGCSREDDERRRPAVPLPPFG 80
           MELCSVSTISTTPPVTIVPDNRRLVINNNSVSDWRRSFVIGCSREDDERRRPAVPLPPFG
Sbjct: 1   MELCSVSTISTTPPVTIVPDNRRLVINNNSVSDWRRSFVIGCSREDDERRRPAVPLPPFG 60

Query: 81  AGELSSGDGLGNVDGRNNSEQILYGRNIDPNMDPRKLK 119
           AGELSSGDGLGNVDGRNNSEQILYGRNIDPNMDPRKLK
Sbjct: 61  AGELSSGDGLGNVDGRNNSEQILYGRNIDPNMDPRKLK 98

[Close]

BLAST of CsaV3_1G036450 vs. NCBI nr
Match: XP_008457560.1 (PREDICTED: basic leucine zipper 34-like [Cucumis melo])

HSP 1 Score: 176.8 bits (447), Expect = 1.1e-40
Identity = 89/99 (89.90%), Postives = 92/99 (92.93%), Query Frame = 0


Query: 21  MELCSVSTISTTPPVTIVPDNRRLVINNNSVSDWRRSFVIGCSREDDERRRPAVPLPPFG 80
           MELCSVST STTPPVTI PDNR LV+ NNSVSDWRRSFVIGCSRED+ERRRP VPL PFG
Sbjct: 1   MELCSVSTYSTTPPVTIRPDNRCLVV-NNSVSDWRRSFVIGCSREDEERRRPTVPLAPFG 60

Query: 81  AGELSS-GDGLGNVDGRNNSEQILYGRNIDPNMDPRKLK 119
           AGE+SS GDGLGNVDGRNNSEQILYGRNIDPNMDPRKLK
Sbjct: 61  AGEMSSGGDGLGNVDGRNNSEQILYGRNIDPNMDPRKLK 98

[Close]

BLAST of CsaV3_1G036450 vs. NCBI nr
Match: XP_022949219.1 (basic leucine zipper 19-like [Cucurbita moschata])

HSP 1 Score: 110.9 bits (276), Expect = 7.5e-21
Identity = 64/127 (50.39%), Postives = 78/127 (61.42%), Query Frame = 0


Query: 1   MEDYHLLQNQNHPPCNFQDLMELCSVSTISTTPPVTIVPDNRRLVINNNSVSDWRRSFVI 60
           MEDY+L   +NH PCNFQ +ME+CS +T+S +P      D R  V+N+NSVS WRRSFV+
Sbjct: 1   MEDYNL--EKNHHPCNFQGIMEMCS-ATVSNSPSNGGADDRR--VMNDNSVSAWRRSFVV 60

Query: 61  GCSRE---------DDERRRPAVPLPPFGAGELSSGDGLGNVDGRNNSEQILYGRNIDPN 119
           G   E         D             G GE+SS DG GNV    NSEQIL+GR++DPN
Sbjct: 61  GSQDEAASSGAKVADGRWSNGLSRFSKIGGGEMSSSDGKGNVGDGGNSEQILFGRSVDPN 120

[Close]

BLAST of CsaV3_1G036450 vs. ExPASy TrEMBL
Match: A0A0A0LXP6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G533410 PE=4 SV=1)

HSP 1 Score: 248.4 bits (633), Expect = 1.5e-62
Identity = 118/118 (100.00%), Postives = 118/118 (100.00%), Query Frame = 0


Query: 1   MEDYHLLQNQNHPPCNFQDLMELCSVSTISTTPPVTIVPDNRRLVINNNSVSDWRRSFVI 60
           MEDYHLLQNQNHPPCNFQDLMELCSVSTISTTPPVTIVPDNRRLVINNNSVSDWRRSFVI
Sbjct: 1   MEDYHLLQNQNHPPCNFQDLMELCSVSTISTTPPVTIVPDNRRLVINNNSVSDWRRSFVI 60

Query: 61  GCSREDDERRRPAVPLPPFGAGELSSGDGLGNVDGRNNSEQILYGRNIDPNMDPRKLK 119
           GCSREDDERRRPAVPLPPFGAGELSSGDGLGNVDGRNNSEQILYGRNIDPNMDPRKLK
Sbjct: 61  GCSREDDERRRPAVPLPPFGAGELSSGDGLGNVDGRNNSEQILYGRNIDPNMDPRKLK 118

[Close]

BLAST of CsaV3_1G036450 vs. ExPASy TrEMBL
Match: A0A5A7UY89 (Basic leucine zipper 34-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold194G00750 PE=4 SV=1)

HSP 1 Score: 218.4 bits (555), Expect = 1.6e-53
Identity = 107/119 (89.92%), Postives = 112/119 (94.12%), Query Frame = 0


Query: 1   MEDYHLLQNQNHPPCNFQDLMELCSVSTISTTPPVTIVPDNRRLVINNNSVSDWRRSFVI 60
           MEDY+LLQNQNHPPCNFQD+MELCSVST STTPPVTI PDNR LV+ NNSVSDWRRSFVI
Sbjct: 1   MEDYNLLQNQNHPPCNFQDIMELCSVSTYSTTPPVTIRPDNRCLVV-NNSVSDWRRSFVI 60

Query: 61  GCSREDDERRRPAVPLPPFGAGELSS-GDGLGNVDGRNNSEQILYGRNIDPNMDPRKLK 119
           GCSRED+ERRRP VPL PFGAGE+SS GDGLGNVDGRNNSEQILYGRNIDPNMDPRKLK
Sbjct: 61  GCSREDEERRRPTVPLAPFGAGEMSSGGDGLGNVDGRNNSEQILYGRNIDPNMDPRKLK 118

[Close]

BLAST of CsaV3_1G036450 vs. ExPASy TrEMBL
Match: A0A1S3C5D9 (basic leucine zipper 34-like OS=Cucumis melo OX=3656 GN=LOC103497225 PE=4 SV=1)

HSP 1 Score: 176.8 bits (447), Expect = 5.4e-41
Identity = 89/99 (89.90%), Postives = 92/99 (92.93%), Query Frame = 0


Query: 21  MELCSVSTISTTPPVTIVPDNRRLVINNNSVSDWRRSFVIGCSREDDERRRPAVPLPPFG 80
           MELCSVST STTPPVTI PDNR LV+ NNSVSDWRRSFVIGCSRED+ERRRP VPL PFG
Sbjct: 1   MELCSVSTYSTTPPVTIRPDNRCLVV-NNSVSDWRRSFVIGCSREDEERRRPTVPLAPFG 60

Query: 81  AGELSS-GDGLGNVDGRNNSEQILYGRNIDPNMDPRKLK 119
           AGE+SS GDGLGNVDGRNNSEQILYGRNIDPNMDPRKLK
Sbjct: 61  AGEMSSGGDGLGNVDGRNNSEQILYGRNIDPNMDPRKLK 98

[Close]

BLAST of CsaV3_1G036450 vs. ExPASy TrEMBL
Match: A0A6J1GC75 (basic leucine zipper 19-like OS=Cucurbita moschata OX=3662 GN=LOC111452635 PE=4 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 3.6e-21
Identity = 64/127 (50.39%), Postives = 78/127 (61.42%), Query Frame = 0


Query: 1   MEDYHLLQNQNHPPCNFQDLMELCSVSTISTTPPVTIVPDNRRLVINNNSVSDWRRSFVI 60
           MEDY+L   +NH PCNFQ +ME+CS +T+S +P      D R  V+N+NSVS WRRSFV+
Sbjct: 1   MEDYNL--EKNHHPCNFQGIMEMCS-ATVSNSPSNGGADDRR--VMNDNSVSAWRRSFVV 60

Query: 61  GCSRE---------DDERRRPAVPLPPFGAGELSSGDGLGNVDGRNNSEQILYGRNIDPN 119
           G   E         D             G GE+SS DG GNV    NSEQIL+GR++DPN
Sbjct: 61  GSQDEAASSGAKVADGRWSNGLSRFSKIGGGEMSSSDGKGNVGDGGNSEQILFGRSVDPN 120

[Close]

BLAST of CsaV3_1G036450 vs. ExPASy TrEMBL
Match: A0A6J1KFV5 (basic leucine zipper 19-like OS=Cucurbita maxima OX=3661 GN=LOC111492853 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 1.8e-20
Identity = 64/127 (50.39%), Postives = 77/127 (60.63%), Query Frame = 0


Query: 1   MEDYHLLQNQNHPPCNFQDLMELCSVSTISTTPPVTIVPDNRRLVINNNSVSDWRRSFVI 60
           MEDY+L   QNH PCNFQ +ME+CS +T+S +P      D R  V+ +NSVS WRRSFV+
Sbjct: 1   MEDYNL--EQNHHPCNFQGIMEMCS-ATVSNSPSNGGSDDRR--VMYDNSVSAWRRSFVV 60

Query: 61  GCSRE---------DDERRRPAVPLPPFGAGELSSGDGLGNVDGRNNSEQILYGRNIDPN 119
           G   E         D             G GE+SS DG GNV    NSEQIL+GR++DPN
Sbjct: 61  GSQDEAASGGGKVADGRWSNGLSRFSKIGGGEMSSSDGKGNVGDGGNSEQILFGRSVDPN 120

The following BLAST results are available for this feature:

BLAST of CsaV3_1G036450 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8653289.1	3.0e-62	100.00	hypothetical protein Csa_023232, partial [Cucumis sativus]	[more]
KAA0060024.1	3.3e-53	89.92	basic leucine zipper 34-like [Cucumis melo var. makuwa] >TYJ97281.1 basic leucin...	[more]
XP_011648516.1	1.1e-48	100.00	basic leucine zipper 34 [Cucumis sativus]	[more]
XP_008457560.1	1.1e-40	89.90	PREDICTED: basic leucine zipper 34-like [Cucumis melo]	[more]
XP_022949219.1	7.5e-21	50.39	basic leucine zipper 19-like [Cucurbita moschata]	[more]

BLAST of CsaV3_1G036450 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_1G036450 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LXP6	1.5e-62	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G533410 PE=4 SV=1	[more]
A0A5A7UY89	1.6e-53	89.92	Basic leucine zipper 34-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
A0A1S3C5D9	5.4e-41	89.90	basic leucine zipper 34-like OS=Cucumis melo OX=3656 GN=LOC103497225 PE=4 SV=1	[more]
A0A6J1GC75	3.6e-21	50.39	basic leucine zipper 19-like OS=Cucurbita moschata OX=3662 GN=LOC111452635 PE=4 ...	[more]
A0A6J1KFV5	1.8e-20	50.39	basic leucine zipper 19-like OS=Cucurbita maxima OX=3661 GN=LOC111492853 PE=4 SV...	[more]

BLAST of CsaV3_1G036450 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 66..118
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 91..105

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_1G036450.1	CsaV3_1G036450.1	mRNA