CsaV3_1G036270 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_1G036270
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionProtein PSY3
Locationchr1: 22234128 .. 22240674 (-)
RNA-Seq ExpressionCsaV3_1G036270
SyntenyCsaV3_1G036270
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AATAGCCGTTTCAATAATAAGATAGAGTTTAATTTAAAGAATGTATGTACATTGAGATATTAGGAATGTGATCCTTTTTTTTCTTTACTTACCAAAATTAACAACACATTTCATCTATTTTTTGTTCTATATATCCTTCATTCAAATTCACCAATTTTCAACATGATAAAAACTTCCCATAGCTAATTTCTTCATTTCTCTCTACGTAAACACACACATATATGTTTGATTTCTTTATTTCCTAATCTCCATTACAAATCATTCAAACCAAAGAAAATCCAACAACTAACATATGGATTATTCAAAAGCTCGTCTTGCTCTCTTCCTCTTGCTCTCGTTTGCCCTCGCTACCTCGGCTCGGATCATACCCCATTCAGGTACGTAAGATTGCCAATTAACTTTGCTGTTGAATAGTCTAGATTTGTATAATATATAGAAAACTAAATAATCTAATATCATATCAGAAAACCAAGAAGCAACGTATATTATGAATGACTATTCTGATCCGGGAGCTAATCCAAGACATGATCCGTTCCCACCTCCGCTAGAACATTCGTTTGAGGTTAACGCTGTCAGAGGCCGCCACATCACAAAAAATCCCTAAAGAAATTTGGCTTGGTAGAGGAGGAAGAAAGGATGAGGAAGGAAGCTTAAAAGGAGAAATAATGGTGCATGAACCAATAATAGCACTATATAAATGTTATATTATTGATTTATATAATTCCCTTTATGTGTGTTGAGAATGGAGTAATATATATTATCAAATTAATGTAATAAATGCTGAAAATATAATATGCTAATGACTAAATATATGTATATAAAGTTGTGCC

mRNA sequence

ATGGATTATTCAAAAGCTCGTCTTGCTCTCTTCCTCTTGCTCTCGTTTGCCCTCGCTACCTCGGCTCGGATCATACCCCATTCAGAAAACCAAGAAGCAACGTATATTATGAATGACTATTCTGATCCGGGAGCTAATCCAAGACATGATCCGTTCCCACCTCCGCTAGAACATTCGTTTGAGGTTAACGCTGTCAGAGGCCGCCACATCACAAAAAATCCCTAA

Coding sequence (CDS)

ATGGATTATTCAAAAGCTCGTCTTGCTCTCTTCCTCTTGCTCTCGTTTGCCCTCGCTACCTCGGCTCGGATCATACCCCATTCAGAAAACCAAGAAGCAACGTATATTATGAATGACTATTCTGATCCGGGAGCTAATCCAAGACATGATCCGTTCCCACCTCCGCTAGAACATTCGTTTGAGGTTAACGCTGTCAGAGGCCGCCACATCACAAAAAATCCCTAA

Protein sequence

MDYSKARLALFLLLSFALATSARIIPHSENQEATYIMNDYSDPGANPRHDPFPPPLEHSFEVNAVRGRHITKNP*
Homology
[Close]
BLAST of CsaV3_1G036270 vs. NCBI nr
Match: KGN65816.1 (hypothetical protein Csa_023196 [Cucumis sativus])

HSP 1 Score: 154.8 bits (390), Expect = 2.9e-34
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 0 

Query: 1  MDYSKARLALFLLLSFALATSARIIPHSENQEATYIMNDYSDPGANPRHDPFPPPLEHSF 60
          MDYSKARLALFLLLSFALATSARIIPHSENQEATYIMNDYSDPGANPRHDPFPPPLEHSF
Sbjct: 1  MDYSKARLALFLLLSFALATSARIIPHSENQEATYIMNDYSDPGANPRHDPFPPPLEHSF 60

Query: 61 EVNAVRGRHITKNP 75
          EVNAVRGRHITKNP
Sbjct: 61 EVNAVRGRHITKNP 74

[Close]
BLAST of CsaV3_1G036270 vs. NCBI nr
Match: KAA0031836.1 (Protein PSY3 [Cucumis melo var. makuwa])

HSP 1 Score: 117.9 bits (294), Expect = 3.9e-23
Identity = 57/73 (78.08%), Postives = 61/73 (83.56%), Query Frame = 0 

Query: 1  MDYSKARLALFLLLSFALATSARIIPHSENQEATYIMNDYSDPGANPRHDPFPPPLEHSF 60
          MDYSKARLALFLLLSF L TSARIIPHSENQEA Y++NDY DPGANPRHDPFPPP    F
Sbjct: 1  MDYSKARLALFLLLSFVLVTSARIIPHSENQEAAYMINDYPDPGANPRHDPFPPP-SQQF 60

Query: 61 EVNAVRGRHITKN 74
          EV+ V+G  I KN
Sbjct: 61 EVSVVKGHRIKKN 72

[Close]
BLAST of CsaV3_1G036270 vs. NCBI nr
Match: KAA0031837.1 (hypothetical protein E6C27_scaffold848G00870 [Cucumis melo var. makuwa] >TYJ97300.1 hypothetical protein E5676_scaffold194G00970 [Cucumis melo var. makuwa])

HSP 1 Score: 112.1 bits (279), Expect = 2.1e-21
Identity = 54/74 (72.97%), Postives = 59/74 (79.73%), Query Frame = 0 

Query: 1  MDYSKARLALFLLLSFALATSARIIPHSENQEATYIMNDYSDPGANPRHDPFPPPLEHSF 60
          MDYSK RLAL LLLSFA+ T ARIIPHSENQE  Y +NDY DPGANPRHDPFPPP    F
Sbjct: 1  MDYSKTRLALLLLLSFAIVTFARIIPHSENQEVAYTINDYPDPGANPRHDPFPPP-PQQF 60

Query: 61 EVNAVRGRHITKNP 75
          EV+ V+ +HI KNP
Sbjct: 61 EVSVVKVQHIRKNP 73

[Close]
BLAST of CsaV3_1G036270 vs. NCBI nr
Match: KAA0031838.1 (hypothetical protein E6C27_scaffold848G00880 [Cucumis melo var. makuwa])

HSP 1 Score: 107.8 bits (268), Expect = 4.0e-20
Identity = 54/75 (72.00%), Postives = 61/75 (81.33%), Query Frame = 0 

Query: 1  MDYSKARL-ALFLLLSFALATSARIIPHSENQEATYIMNDYSDPGANPRHDPFPPPLEHS 60
          M+Y KARL ALFLLLSFAL TSARI+PHSENQEA Y++NDY DPGANPRHDPFPPP    
Sbjct: 1  MNYFKARLIALFLLLSFALVTSARIMPHSENQEAAYMINDYPDPGANPRHDPFPPP-PQQ 60

Query: 61 FEVNAVRGRHITKNP 75
          FE++ V+   I KNP
Sbjct: 61 FEISVVKDHDIKKNP 74

[Close]
BLAST of CsaV3_1G036270 vs. NCBI nr
Match: XP_011658636.1 (protein PSY3 [Cucumis sativus] >KGN65818.1 hypothetical protein Csa_023361 [Cucumis sativus])

HSP 1 Score: 105.5 bits (262), Expect = 2.0e-19
Identity = 55/76 (72.37%), Postives = 59/76 (77.63%), Query Frame = 0 

Query: 1  MDYSKAR--LALFLLLSFALATSARIIPHSENQEATYIMNDYSDPGANPRHDPFPPPLEH 60
          MDYSKAR  LALFLLLSFAL  SARIIPHSENQEA Y++NDY DPGANPRH P PPP  H
Sbjct: 1  MDYSKARLSLALFLLLSFALVASARIIPHSENQEAAYVINDYPDPGANPRHRP-PPPSRH 60

Query: 61 SFEVNAVRGRHITKNP 75
          S EV+ V+ R I   P
Sbjct: 61 SSEVSVVKSRLIKNKP 75

[Close]
BLAST of CsaV3_1G036270 vs. ExPASy TrEMBL
Match: A0A0A0M0T8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G532240 PE=4 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 1.4e-34
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 0 

Query: 1  MDYSKARLALFLLLSFALATSARIIPHSENQEATYIMNDYSDPGANPRHDPFPPPLEHSF 60
          MDYSKARLALFLLLSFALATSARIIPHSENQEATYIMNDYSDPGANPRHDPFPPPLEHSF
Sbjct: 1  MDYSKARLALFLLLSFALATSARIIPHSENQEATYIMNDYSDPGANPRHDPFPPPLEHSF 60

Query: 61 EVNAVRGRHITKNP 75
          EVNAVRGRHITKNP
Sbjct: 61 EVNAVRGRHITKNP 74

[Close]
BLAST of CsaV3_1G036270 vs. ExPASy TrEMBL
Match: A0A5A7SPC6 (Protein PSY3 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold848G00860 PE=4 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 1.9e-23
Identity = 57/73 (78.08%), Postives = 61/73 (83.56%), Query Frame = 0 

Query: 1  MDYSKARLALFLLLSFALATSARIIPHSENQEATYIMNDYSDPGANPRHDPFPPPLEHSF 60
          MDYSKARLALFLLLSF L TSARIIPHSENQEA Y++NDY DPGANPRHDPFPPP    F
Sbjct: 1  MDYSKARLALFLLLSFVLVTSARIIPHSENQEAAYMINDYPDPGANPRHDPFPPP-SQQF 60

Query: 61 EVNAVRGRHITKN 74
          EV+ V+G  I KN
Sbjct: 61 EVSVVKGHRIKKN 72

[Close]
BLAST of CsaV3_1G036270 vs. ExPASy TrEMBL
Match: A0A0A0LV67 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G532230 PE=4 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 2.5e-23
Identity = 54/74 (72.97%), Postives = 61/74 (82.43%), Query Frame = 0 

Query: 1  MDYSKARLALFLLLSFALATSARIIPHSENQEATYIMNDYSDPGANPRHDPFPPPLEHSF 60
          MDYSKARL+L LLLSF L TSARIIPHSENQE  Y++NDY DPGANPRH+PFPPP  H F
Sbjct: 1  MDYSKARLSLLLLLSFVLVTSARIIPHSENQEVAYMINDYPDPGANPRHNPFPPPPRHLF 60

Query: 61 EVNAVRGRHITKNP 75
          E++ V+   ITKNP
Sbjct: 61 EISVVKDGDITKNP 74

[Close]
BLAST of CsaV3_1G036270 vs. ExPASy TrEMBL
Match: A0A5D3BBU7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold194G00970 PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 1.0e-21
Identity = 54/74 (72.97%), Postives = 59/74 (79.73%), Query Frame = 0 

Query: 1  MDYSKARLALFLLLSFALATSARIIPHSENQEATYIMNDYSDPGANPRHDPFPPPLEHSF 60
          MDYSK RLAL LLLSFA+ T ARIIPHSENQE  Y +NDY DPGANPRHDPFPPP    F
Sbjct: 1  MDYSKTRLALLLLLSFAIVTFARIIPHSENQEVAYTINDYPDPGANPRHDPFPPP-PQQF 60

Query: 61 EVNAVRGRHITKNP 75
          EV+ V+ +HI KNP
Sbjct: 61 EVSVVKVQHIRKNP 73

[Close]
BLAST of CsaV3_1G036270 vs. ExPASy TrEMBL
Match: A0A5A7SMH7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold848G00880 PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 1.9e-20
Identity = 54/75 (72.00%), Postives = 61/75 (81.33%), Query Frame = 0 

Query: 1  MDYSKARL-ALFLLLSFALATSARIIPHSENQEATYIMNDYSDPGANPRHDPFPPPLEHS 60
          M+Y KARL ALFLLLSFAL TSARI+PHSENQEA Y++NDY DPGANPRHDPFPPP    
Sbjct: 1  MNYFKARLIALFLLLSFALVTSARIMPHSENQEAAYMINDYPDPGANPRHDPFPPP-PQQ 60

Query: 61 FEVNAVRGRHITKNP 75
          FE++ V+   I KNP
Sbjct: 61 FEISVVKDHDIKKNP 74

[Close]
BLAST of CsaV3_1G036270 vs. TAIR 10
Match: AT2G29995.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 6 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G07175.1); Has 14 Blast hits to 14 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 14; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 42.4 bits (98), Expect = 1.9e-04
Identity = 26/56 (46.43%), Postives = 30/56 (53.57%), Query Frame = 0 

Query: 4  SKARLALFLLLSFALATSARIIPHSENQEATYI--------MNDYSDPGANPRHDP 52
          S+  L LFL  +FAL +SARI       E T +         NDYSDP AN RHDP
Sbjct: 7  SRIGLCLFLFFTFALLSSARISLSFSENEMTVVPERSLMVSTNDYSDPTANGRHDP 62

The following BLAST results are available for this feature:
BLAST of CsaV3_1G036270 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN65816.12.9e-34100.00hypothetical protein Csa_023196 [Cucumis sativus][more]
KAA0031836.13.9e-2378.08Protein PSY3 [Cucumis melo var. makuwa][more]
KAA0031837.12.1e-2172.97hypothetical protein E6C27_scaffold848G00870 [Cucumis melo var. makuwa] >TYJ9730... [more]
KAA0031838.14.0e-2072.00hypothetical protein E6C27_scaffold848G00880 [Cucumis melo var. makuwa][more]
XP_011658636.12.0e-1972.37protein PSY3 [Cucumis sativus] >KGN65818.1 hypothetical protein Csa_023361 [Cucu... [more]
BLAST of CsaV3_1G036270 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G036270 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0M0T81.4e-34100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G532240 PE=4 SV=1[more]
A0A5A7SPC61.9e-2378.08Protein PSY3 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold848G00860 P... [more]
A0A0A0LV672.5e-2372.97Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G532230 PE=4 SV=1[more]
A0A5D3BBU71.0e-2172.97Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7SMH71.9e-2072.00Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
BLAST of CsaV3_1G036270 vs. TAIR 10
Match NameE-valueIdentityDescription
AT2G29995.11.9e-0446.43unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_1G036270.1CsaV3_1G036270.1mRNA