CsaV3_1G035870 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_1G035870
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	RING-CH-type domain-containing protein
Location	chr1: 21906292 .. 21909233 (-)
RNA-Seq Expression	CsaV3_1G035870
Synteny	CsaV3_1G035870

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GAAAACTGAAAACTGTGTGCATAATATGGGAAAGAGATTGAGACTGTAGCTTAATGATCCTTAAATAATCGGAAAAAGCTGCAAATTCTGTCTCTCACGCATCCCTTTCCTCTTTTGCGTCTTCTTCAATAATCACTGTTCTTGTCACGCTTTTTTCTTTTAATTTCCAATTTCCTTTTCTCTTTGAACAACCACAATCGATACTGACACGCCGAAAAAGAGTTTCACTTTGTGTCTGTATTTGTTTGTTAGAGACGAACTTGATATTATCATCTTTGATAAAGAGAGAGAATCAAGAAATCAACAAACAGACAAAAGCCCATAACCCCACGTTTGCCCTCTCTTTCTTTCTCTTGATTCCAAGGTGTTTTACTTTAGACTAATCTCATGGTTAAAAGGGATGAGCTCTTAATTTACTGTGTGTTTATGATAATTTCATATTCTTGATTGTGGTATGGTATTTCTTCTAAATTTTGATTTCGTGTTCTACTTGTACATTCTGAAATCTGTATGGGAATTGCAACTGTACATGGTTAGGACTTAGAAGGAAAGAGGAAGGGGAGAAAAGAAATGGTTATTACTTATAAATACCACGGAGCCCTTCTTCTTAATCTTTTCATCTTGCTGGGACCGCCATGTTTTCCTGTACTGTTTGTTAATACATATCTTTTGGTTTTTCGTCAGTCGAATGCCATTTCTCCATCTGGGTTTCACAGTATGTCGGCGGTTGAAGCTCCCCGTGGTGATTCCGACCCTGCAAATCCGAGCTCCTTGCCATTTCGCGATGCTCGTTCAGCTGCTGGAAGCTGCAGCGACATGTCAGTACTTGATGATTCTGATGACCAGTCGTGGCACTCGGTTTTTGACTCCACAGCCTGGGGATCTCACGGCGAGGGTCAATTTTCCGGTGAGATAGAGGGCGTTCCGGACGCCGAAATGGGTCATTTCATCTCGGAAAGCTCGTCGGAGGTGGATTTGGAGAGCGGGGATTTGGAGGTGAAGGTGCATTTGGGGAAGATCGAAAGGGACTGCAGAATTTGTCATTTGGAGCTGGAAAGCAGTGGAGGAAGAGATAATTCTGATACTCCAATTCAGCTTGGTTGTTGCTGTCGAGGTGATTTGGGTACTGCCCACAAGCAATGTGCTGAGACTTGGTTCAAAATCAAGGGAAACACGTAAGTATTCATTCTAATTAACTCCCATTTTTTCCTATCAGATTTCTTTCATTCCCTCAGAAACCCAATTCTTAATAGAATCCTTTGATTATCATTGGCTTCGTTGAAGTTTTACCTAGACTTGGATTAACTTGGGTTTTGCTAGTAGTTTGATTGGAGATAAATTAAAAATCTAAGCTCCTGAAAGATAAGAAGACGAGTTTTTTGCTTGGGAAAGATTTCTAAACTTTCTCTGCTTCTTCTTTTAGCAGCAATTCTCTTGAGTTTTCTGCCATGAATTACCCTCAAACAGTTTCATCACTTTGTTGTATTGTGTAAATTCACTATGACTACAAACTTAAAGTGGTTGGATGGATCTTCTGCTGTCAGCATTTGGTTTTCTTTATTGTACTAGAAGTAATTAACTCAATTTTGGTGGCTTCCATCTGTTGTAACTTCTAAGTTGTTCAAAGTTAACATTTATCAATATAGTATCATGTAGATAAGATAAAAGAATGATATATGACATATCTGAAGTTTGGATATCTCCTTTTTTTCCTTTGCATTTCAGAATATGATGGTGTCACACATAAGTTCCAATAAATTTCCATGTGTCCAAGTTGAACTTACAAACTTGCCCATAGCTAATCCGTTCCATTTTTCTTTAATTCTTCTATTTGTGATAATGTAAATCATTCAGACACTTAGAAATTAGGCAGACAAATTAGAATTCAGGTTAGAAACCTTGCATCAACTTGATTTTGTGTGTAAACAGCTTCACTATTGAGAATGAATATATTGTCATTAAATGGTGTTTGGTGCACTGAAGTATGAAGTTAATATATTAGAGTTAGAAAATGGGTGTAGAGTTGTAAGATGAAATTTCCTACTAAAAGTGCAAACTTTATCGGTATTTGCTATCAAAATTGATTTGCTGAACAACTTATGAATTGGTGAGCTAGACACCCCAAAAGTTTATGTATTGTCATATTAGAAGGTATTCAACAGATATAAATGAGGTATATGATCGTTTGTATGAGAACGACTATTCTCAAACGTAGGAACACCATTAGACATCTTGAAGGTGCTGGAGATCATTCCAACTCTCTAGACAAGAACTCTCAATCAGCCAAATTTAGATTTCTTTTGGCTAGTTGGTGTATATGACTCTCCCATTTCAAAAAATTCGAACCTCTTGAATTATGTTTAAGTTGAAGATTTGGCAATACATTTTTGTTACTATTAGCTTGACAAGTGATACAATCTTTTCCTTGCAGTATTTGCGAGATATGTGGGGCAACTGCACAAAACGTGGCAAGTCAACAAATAAACGAACCGAGCAATGCAGTTGCGACTGCAGTAGCATCCTCAGCTCTGACAGCACCCCTGACTCTAGTCGAGACTCGAACAATCTTTCACGGTCGACGCATTATGAACTTTCTGCTTGCTTGCATGCTCCTTGCATTTGCAATGTCCTGGCTTTTTCATTTCAAGTTAATGTCATAGACTTAGGAAGAAGGAAGAAAATTAATGAAGAAAGGAAAATGTAGAGGCAATTTGGGTTCTTCAGGCCTTTGTATATATATTTACACTTTCAGTTTGATTAGTTAATTTTGAAGGGGTTGGTTTATTTAGGCATTTCTCAATTGTAGTGTAGTGAATGGCTAATGAATAGGGTTCAGTAAATAGAAATACATTTCTCTAAATCTGTGTTGGTTGACATGAGCAACTACACAAGTACAAAAATTGTCTGGCAGTCATTTTAAAAAAATATAAACAAAATTTTCT

mRNA sequence

ATGGTTATTACTTATAAATACCACGGAGCCCTTCTTCTTAATCTTTTCATCTTGCTGGGACCGCCATGTTTTCCTGTACTGTTTGTTAATACATATCTTTTGGTTTTTCGTCAGTCGAATGCCATTTCTCCATCTGGGTTTCACAGTATGTCGGCGGTTGAAGCTCCCCGTGGTGATTCCGACCCTGCAAATCCGAGCTCCTTGCCATTTCGCGATGCTCGTTCAGCTGCTGGAAGCTGCAGCGACATGTCAGTACTTGATGATTCTGATGACCAGTCGTGGCACTCGGTTTTTGACTCCACAGCCTGGGGATCTCACGGCGAGGGTCAATTTTCCGGTGAGATAGAGGGCGTTCCGGACGCCGAAATGGGTCATTTCATCTCGGAAAGCTCGTCGGAGGTGGATTTGGAGAGCGGGGATTTGGAGGTGAAGGTGCATTTGGGGAAGATCGAAAGGGACTGCAGAATTTGTCATTTGGAGCTGGAAAGCAGTGGAGGAAGAGATAATTCTGATACTCCAATTCAGCTTGGTTGTTGCTGTCGAGGTGATTTGGGTACTGCCCACAAGCAATGTGCTGAGACTTGGTTCAAAATCAAGGGAAACACTATTTGCGAGATATGTGGGGCAACTGCACAAAACGTGGCAAGTCAACAAATAAACGAACCGAGCAATGCAGTTGCGACTGCAGTAGCATCCTCAGCTCTGACAGCACCCCTGACTCTAGTCGAGACTCGAACAATCTTTCACGGTCGACGCATTATGAACTTTCTGCTTGCTTGCATGCTCCTTGCATTTGCAATGTCCTGGCTTTTTCATTTCAAGTTAATGTCATAG

Coding sequence (CDS)

ATGGTTATTACTTATAAATACCACGGAGCCCTTCTTCTTAATCTTTTCATCTTGCTGGGACCGCCATGTTTTCCTGTACTGTTTGTTAATACATATCTTTTGGTTTTTCGTCAGTCGAATGCCATTTCTCCATCTGGGTTTCACAGTATGTCGGCGGTTGAAGCTCCCCGTGGTGATTCCGACCCTGCAAATCCGAGCTCCTTGCCATTTCGCGATGCTCGTTCAGCTGCTGGAAGCTGCAGCGACATGTCAGTACTTGATGATTCTGATGACCAGTCGTGGCACTCGGTTTTTGACTCCACAGCCTGGGGATCTCACGGCGAGGGTCAATTTTCCGGTGAGATAGAGGGCGTTCCGGACGCCGAAATGGGTCATTTCATCTCGGAAAGCTCGTCGGAGGTGGATTTGGAGAGCGGGGATTTGGAGGTGAAGGTGCATTTGGGGAAGATCGAAAGGGACTGCAGAATTTGTCATTTGGAGCTGGAAAGCAGTGGAGGAAGAGATAATTCTGATACTCCAATTCAGCTTGGTTGTTGCTGTCGAGGTGATTTGGGTACTGCCCACAAGCAATGTGCTGAGACTTGGTTCAAAATCAAGGGAAACACTATTTGCGAGATATGTGGGGCAACTGCACAAAACGTGGCAAGTCAACAAATAAACGAACCGAGCAATGCAGTTGCGACTGCAGTAGCATCCTCAGCTCTGACAGCACCCCTGACTCTAGTCGAGACTCGAACAATCTTTCACGGTCGACGCATTATGAACTTTCTGCTTGCTTGCATGCTCCTTGCATTTGCAATGTCCTGGCTTTTTCATTTCAAGTTAATGTCATAG

Protein sequence

MVITYKYHGALLLNLFILLGPPCFPVLFVNTYLLVFRQSNAISPSGFHSMSAVEAPRGDSDPANPSSLPFRDARSAAGSCSDMSVLDDSDDQSWHSVFDSTAWGSHGEGQFSGEIEGVPDAEMGHFISESSSEVDLESGDLEVKVHLGKIERDCRICHLELESSGGRDNSDTPIQLGCCCRGDLGTAHKQCAETWFKIKGNTICEICGATAQNVASQQINEPSNAVATAVASSALTAPLTLVETRTIFHGRRIMNFLLACMLLAFAMSWLFHFKLMS*

Homology

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BLAST of CsaV3_1G035870 vs. NCBI nr
Match: XP_004145266.2 (uncharacterized protein LOC101212160 isoform X1 [Cucumis sativus] >KGN65776.1 hypothetical protein Csa_023291 [Cucumis sativus])

HSP 1 Score: 552.0 bits (1421), Expect = 3.0e-153
Identity = 277/277 (100.00%), Postives = 277/277 (100.00%), Query Frame = 0


Query: 1   MVITYKYHGALLLNLFILLGPPCFPVLFVNTYLLVFRQSNAISPSGFHSMSAVEAPRGDS 60
           MVITYKYHGALLLNLFILLGPPCFPVLFVNTYLLVFRQSNAISPSGFHSMSAVEAPRGDS
Sbjct: 1   MVITYKYHGALLLNLFILLGPPCFPVLFVNTYLLVFRQSNAISPSGFHSMSAVEAPRGDS 60

Query: 61  DPANPSSLPFRDARSAAGSCSDMSVLDDSDDQSWHSVFDSTAWGSHGEGQFSGEIEGVPD 120
           DPANPSSLPFRDARSAAGSCSDMSVLDDSDDQSWHSVFDSTAWGSHGEGQFSGEIEGVPD
Sbjct: 61  DPANPSSLPFRDARSAAGSCSDMSVLDDSDDQSWHSVFDSTAWGSHGEGQFSGEIEGVPD 120

Query: 121 AEMGHFISESSSEVDLESGDLEVKVHLGKIERDCRICHLELESSGGRDNSDTPIQLGCCC 180
           AEMGHFISESSSEVDLESGDLEVKVHLGKIERDCRICHLELESSGGRDNSDTPIQLGCCC
Sbjct: 121 AEMGHFISESSSEVDLESGDLEVKVHLGKIERDCRICHLELESSGGRDNSDTPIQLGCCC 180

Query: 181 RGDLGTAHKQCAETWFKIKGNTICEICGATAQNVASQQINEPSNAVATAVASSALTAPLT 240
           RGDLGTAHKQCAETWFKIKGNTICEICGATAQNVASQQINEPSNAVATAVASSALTAPLT
Sbjct: 181 RGDLGTAHKQCAETWFKIKGNTICEICGATAQNVASQQINEPSNAVATAVASSALTAPLT 240

Query: 241 LVETRTIFHGRRIMNFLLACMLLAFAMSWLFHFKLMS 278
           LVETRTIFHGRRIMNFLLACMLLAFAMSWLFHFKLMS
Sbjct: 241 LVETRTIFHGRRIMNFLLACMLLAFAMSWLFHFKLMS 277

[Close]

BLAST of CsaV3_1G035870 vs. NCBI nr
Match: XP_008457414.1 (PREDICTED: uncharacterized protein LOC103497107 isoform X1 [Cucumis melo] >KAA0031780.1 E3 ubiquitin-protein ligase MARCH1 [Cucumis melo var. makuwa] >TYJ97351.1 E3 ubiquitin-protein ligase MARCH1 [Cucumis melo var. makuwa])

HSP 1 Score: 537.3 bits (1383), Expect = 7.6e-149
Identity = 272/277 (98.19%), Postives = 273/277 (98.56%), Query Frame = 0


Query: 1   MVITYKYHGALLLNLFILLGPPCFPVLFVNTYLLVFRQSNAISPSGFHSMSAVEAPRGDS 60
           MVITYKYHG+ LLNLFILLGPPCFPVLFVNTYLLVFRQSNAISPSGFH MSAVEAPRGDS
Sbjct: 1   MVITYKYHGS-LLNLFILLGPPCFPVLFVNTYLLVFRQSNAISPSGFHRMSAVEAPRGDS 60

Query: 61  DPANPSSLPFRDARSAAGSCSDMSVLDDSDDQSWHSVFDSTAWGSHGEGQFSGEIEGVPD 120
           DPANPSSLPFRDARSAAGSCSDMSVLDDSDDQSWHSVFDSTAWGSHGEGQFSGEIEGV D
Sbjct: 61  DPANPSSLPFRDARSAAGSCSDMSVLDDSDDQSWHSVFDSTAWGSHGEGQFSGEIEGVLD 120

Query: 121 AEMGHFISESSSEVDLESGDLEVKVHLGKIERDCRICHLELESSGGRDNSDTPIQLGCCC 180
           AEMGHFISESSSEVDLESGDLEVKVHLGKIERDCRICHLELESSGGRDNSDTPIQLGCCC
Sbjct: 121 AEMGHFISESSSEVDLESGDLEVKVHLGKIERDCRICHLELESSGGRDNSDTPIQLGCCC 180

Query: 181 RGDLGTAHKQCAETWFKIKGNTICEICGATAQNVASQQINEPSNAVATAVASSALTAPLT 240
           RGDLGTAHKQCAETWFKIKGNTICEICGATAQNVASQQINEPSNAVA AVASSALTAPLT
Sbjct: 181 RGDLGTAHKQCAETWFKIKGNTICEICGATAQNVASQQINEPSNAVAAAVASSALTAPLT 240

Query: 241 LVETRTIFHGRRIMNFLLACMLLAFAMSWLFHFKLMS 278
           LVETRTIFHGRRIMNFLLACMLLAFAMSWLFHFKLMS
Sbjct: 241 LVETRTIFHGRRIMNFLLACMLLAFAMSWLFHFKLMS 276

[Close]

BLAST of CsaV3_1G035870 vs. NCBI nr
Match: XP_011658411.1 (uncharacterized protein LOC101212160 isoform X2 [Cucumis sativus])

HSP 1 Score: 455.7 bits (1171), Expect = 2.9e-124
Identity = 228/228 (100.00%), Postives = 228/228 (100.00%), Query Frame = 0


Query: 50  MSAVEAPRGDSDPANPSSLPFRDARSAAGSCSDMSVLDDSDDQSWHSVFDSTAWGSHGEG 109
           MSAVEAPRGDSDPANPSSLPFRDARSAAGSCSDMSVLDDSDDQSWHSVFDSTAWGSHGEG
Sbjct: 1   MSAVEAPRGDSDPANPSSLPFRDARSAAGSCSDMSVLDDSDDQSWHSVFDSTAWGSHGEG 60

Query: 110 QFSGEIEGVPDAEMGHFISESSSEVDLESGDLEVKVHLGKIERDCRICHLELESSGGRDN 169
           QFSGEIEGVPDAEMGHFISESSSEVDLESGDLEVKVHLGKIERDCRICHLELESSGGRDN
Sbjct: 61  QFSGEIEGVPDAEMGHFISESSSEVDLESGDLEVKVHLGKIERDCRICHLELESSGGRDN 120

Query: 170 SDTPIQLGCCCRGDLGTAHKQCAETWFKIKGNTICEICGATAQNVASQQINEPSNAVATA 229
           SDTPIQLGCCCRGDLGTAHKQCAETWFKIKGNTICEICGATAQNVASQQINEPSNAVATA
Sbjct: 121 SDTPIQLGCCCRGDLGTAHKQCAETWFKIKGNTICEICGATAQNVASQQINEPSNAVATA 180

Query: 230 VASSALTAPLTLVETRTIFHGRRIMNFLLACMLLAFAMSWLFHFKLMS 278
           VASSALTAPLTLVETRTIFHGRRIMNFLLACMLLAFAMSWLFHFKLMS
Sbjct: 181 VASSALTAPLTLVETRTIFHGRRIMNFLLACMLLAFAMSWLFHFKLMS 228

[Close]

BLAST of CsaV3_1G035870 vs. NCBI nr
Match: XP_008457415.1 (PREDICTED: uncharacterized protein LOC103497107 isoform X2 [Cucumis melo])

HSP 1 Score: 449.9 bits (1156), Expect = 1.6e-122
Identity = 226/228 (99.12%), Postives = 226/228 (99.12%), Query Frame = 0


Query: 50  MSAVEAPRGDSDPANPSSLPFRDARSAAGSCSDMSVLDDSDDQSWHSVFDSTAWGSHGEG 109
           MSAVEAPRGDSDPANPSSLPFRDARSAAGSCSDMSVLDDSDDQSWHSVFDSTAWGSHGEG
Sbjct: 1   MSAVEAPRGDSDPANPSSLPFRDARSAAGSCSDMSVLDDSDDQSWHSVFDSTAWGSHGEG 60

Query: 110 QFSGEIEGVPDAEMGHFISESSSEVDLESGDLEVKVHLGKIERDCRICHLELESSGGRDN 169
           QFSGEIEGV DAEMGHFISESSSEVDLESGDLEVKVHLGKIERDCRICHLELESSGGRDN
Sbjct: 61  QFSGEIEGVLDAEMGHFISESSSEVDLESGDLEVKVHLGKIERDCRICHLELESSGGRDN 120

Query: 170 SDTPIQLGCCCRGDLGTAHKQCAETWFKIKGNTICEICGATAQNVASQQINEPSNAVATA 229
           SDTPIQLGCCCRGDLGTAHKQCAETWFKIKGNTICEICGATAQNVASQQINEPSNAVA A
Sbjct: 121 SDTPIQLGCCCRGDLGTAHKQCAETWFKIKGNTICEICGATAQNVASQQINEPSNAVAAA 180

Query: 230 VASSALTAPLTLVETRTIFHGRRIMNFLLACMLLAFAMSWLFHFKLMS 278
           VASSALTAPLTLVETRTIFHGRRIMNFLLACMLLAFAMSWLFHFKLMS
Sbjct: 181 VASSALTAPLTLVETRTIFHGRRIMNFLLACMLLAFAMSWLFHFKLMS 228

[Close]

BLAST of CsaV3_1G035870 vs. NCBI nr
Match: XP_038895035.1 (uncharacterized protein LOC120083374 [Benincasa hispida] >XP_038895036.1 uncharacterized protein LOC120083374 [Benincasa hispida])

HSP 1 Score: 439.1 bits (1128), Expect = 2.8e-119
Identity = 220/228 (96.49%), Postives = 221/228 (96.93%), Query Frame = 0


Query: 50  MSAVEAPRGDSDPANPSSLPFRDARSAAGSCSDMSVLDDSDDQSWHSVFDSTAWGSHGEG 109
           MSAVEAPRGD DPANPSS+ FRDARSAAGSCSDMSVLDDSDDQSWHSVFDSTAWGSHGEG
Sbjct: 1   MSAVEAPRGDPDPANPSSVLFRDARSAAGSCSDMSVLDDSDDQSWHSVFDSTAWGSHGEG 60

Query: 110 QFSGEIEGVPDAEMGHFISESSSEVDLESGDLEVKVHLGKIERDCRICHLELESSGGRDN 169
           QFSGEIEGVPDAEMGHFISE SSEVDLESGDLEVKVHLGKIERDCRICHLELES GGRDN
Sbjct: 61  QFSGEIEGVPDAEMGHFISECSSEVDLESGDLEVKVHLGKIERDCRICHLELESGGGRDN 120

Query: 170 SDTPIQLGCCCRGDLGTAHKQCAETWFKIKGNTICEICGATAQNVASQQINEPSNAVATA 229
            DTPIQLGCCCRGDLGTAHKQCAETWFKIKGNTICEICGATAQNVASQQINEPSNAVA A
Sbjct: 121 FDTPIQLGCCCRGDLGTAHKQCAETWFKIKGNTICEICGATAQNVASQQINEPSNAVAAA 180

Query: 230 VASSALTAPLTLVETRTIFHGRRIMNFLLACMLLAFAMSWLFHFKLMS 278
           V SSALTAPLTLVETRTIFHGRRIMNFLLACMLLAFAMSWLFHFKLMS
Sbjct: 181 VPSSALTAPLTLVETRTIFHGRRIMNFLLACMLLAFAMSWLFHFKLMS 228

[Close]

BLAST of CsaV3_1G035870 vs. ExPASy TrEMBL
Match: A0A0A0M0P0 (RING-CH-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G527920 PE=4 SV=1)

HSP 1 Score: 552.0 bits (1421), Expect = 1.4e-153
Identity = 277/277 (100.00%), Postives = 277/277 (100.00%), Query Frame = 0


Query: 1   MVITYKYHGALLLNLFILLGPPCFPVLFVNTYLLVFRQSNAISPSGFHSMSAVEAPRGDS 60
           MVITYKYHGALLLNLFILLGPPCFPVLFVNTYLLVFRQSNAISPSGFHSMSAVEAPRGDS
Sbjct: 1   MVITYKYHGALLLNLFILLGPPCFPVLFVNTYLLVFRQSNAISPSGFHSMSAVEAPRGDS 60

Query: 61  DPANPSSLPFRDARSAAGSCSDMSVLDDSDDQSWHSVFDSTAWGSHGEGQFSGEIEGVPD 120
           DPANPSSLPFRDARSAAGSCSDMSVLDDSDDQSWHSVFDSTAWGSHGEGQFSGEIEGVPD
Sbjct: 61  DPANPSSLPFRDARSAAGSCSDMSVLDDSDDQSWHSVFDSTAWGSHGEGQFSGEIEGVPD 120

Query: 121 AEMGHFISESSSEVDLESGDLEVKVHLGKIERDCRICHLELESSGGRDNSDTPIQLGCCC 180
           AEMGHFISESSSEVDLESGDLEVKVHLGKIERDCRICHLELESSGGRDNSDTPIQLGCCC
Sbjct: 121 AEMGHFISESSSEVDLESGDLEVKVHLGKIERDCRICHLELESSGGRDNSDTPIQLGCCC 180

Query: 181 RGDLGTAHKQCAETWFKIKGNTICEICGATAQNVASQQINEPSNAVATAVASSALTAPLT 240
           RGDLGTAHKQCAETWFKIKGNTICEICGATAQNVASQQINEPSNAVATAVASSALTAPLT
Sbjct: 181 RGDLGTAHKQCAETWFKIKGNTICEICGATAQNVASQQINEPSNAVATAVASSALTAPLT 240

Query: 241 LVETRTIFHGRRIMNFLLACMLLAFAMSWLFHFKLMS 278
           LVETRTIFHGRRIMNFLLACMLLAFAMSWLFHFKLMS
Sbjct: 241 LVETRTIFHGRRIMNFLLACMLLAFAMSWLFHFKLMS 277

[Close]

BLAST of CsaV3_1G035870 vs. ExPASy TrEMBL
Match: A0A5D3BFF6 (E3 ubiquitin-protein ligase MARCH1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold194G001610 PE=4 SV=1)

HSP 1 Score: 537.3 bits (1383), Expect = 3.7e-149
Identity = 272/277 (98.19%), Postives = 273/277 (98.56%), Query Frame = 0


Query: 1   MVITYKYHGALLLNLFILLGPPCFPVLFVNTYLLVFRQSNAISPSGFHSMSAVEAPRGDS 60
           MVITYKYHG+ LLNLFILLGPPCFPVLFVNTYLLVFRQSNAISPSGFH MSAVEAPRGDS
Sbjct: 1   MVITYKYHGS-LLNLFILLGPPCFPVLFVNTYLLVFRQSNAISPSGFHRMSAVEAPRGDS 60

Query: 61  DPANPSSLPFRDARSAAGSCSDMSVLDDSDDQSWHSVFDSTAWGSHGEGQFSGEIEGVPD 120
           DPANPSSLPFRDARSAAGSCSDMSVLDDSDDQSWHSVFDSTAWGSHGEGQFSGEIEGV D
Sbjct: 61  DPANPSSLPFRDARSAAGSCSDMSVLDDSDDQSWHSVFDSTAWGSHGEGQFSGEIEGVLD 120

Query: 121 AEMGHFISESSSEVDLESGDLEVKVHLGKIERDCRICHLELESSGGRDNSDTPIQLGCCC 180
           AEMGHFISESSSEVDLESGDLEVKVHLGKIERDCRICHLELESSGGRDNSDTPIQLGCCC
Sbjct: 121 AEMGHFISESSSEVDLESGDLEVKVHLGKIERDCRICHLELESSGGRDNSDTPIQLGCCC 180

Query: 181 RGDLGTAHKQCAETWFKIKGNTICEICGATAQNVASQQINEPSNAVATAVASSALTAPLT 240
           RGDLGTAHKQCAETWFKIKGNTICEICGATAQNVASQQINEPSNAVA AVASSALTAPLT
Sbjct: 181 RGDLGTAHKQCAETWFKIKGNTICEICGATAQNVASQQINEPSNAVAAAVASSALTAPLT 240

Query: 241 LVETRTIFHGRRIMNFLLACMLLAFAMSWLFHFKLMS 278
           LVETRTIFHGRRIMNFLLACMLLAFAMSWLFHFKLMS
Sbjct: 241 LVETRTIFHGRRIMNFLLACMLLAFAMSWLFHFKLMS 276

[Close]

BLAST of CsaV3_1G035870 vs. ExPASy TrEMBL
Match: A0A1S3C6R6 (uncharacterized protein LOC103497107 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103497107 PE=4 SV=1)

HSP 1 Score: 537.3 bits (1383), Expect = 3.7e-149
Identity = 272/277 (98.19%), Postives = 273/277 (98.56%), Query Frame = 0


Query: 1   MVITYKYHGALLLNLFILLGPPCFPVLFVNTYLLVFRQSNAISPSGFHSMSAVEAPRGDS 60
           MVITYKYHG+ LLNLFILLGPPCFPVLFVNTYLLVFRQSNAISPSGFH MSAVEAPRGDS
Sbjct: 1   MVITYKYHGS-LLNLFILLGPPCFPVLFVNTYLLVFRQSNAISPSGFHRMSAVEAPRGDS 60

Query: 61  DPANPSSLPFRDARSAAGSCSDMSVLDDSDDQSWHSVFDSTAWGSHGEGQFSGEIEGVPD 120
           DPANPSSLPFRDARSAAGSCSDMSVLDDSDDQSWHSVFDSTAWGSHGEGQFSGEIEGV D
Sbjct: 61  DPANPSSLPFRDARSAAGSCSDMSVLDDSDDQSWHSVFDSTAWGSHGEGQFSGEIEGVLD 120

Query: 121 AEMGHFISESSSEVDLESGDLEVKVHLGKIERDCRICHLELESSGGRDNSDTPIQLGCCC 180
           AEMGHFISESSSEVDLESGDLEVKVHLGKIERDCRICHLELESSGGRDNSDTPIQLGCCC
Sbjct: 121 AEMGHFISESSSEVDLESGDLEVKVHLGKIERDCRICHLELESSGGRDNSDTPIQLGCCC 180

Query: 181 RGDLGTAHKQCAETWFKIKGNTICEICGATAQNVASQQINEPSNAVATAVASSALTAPLT 240
           RGDLGTAHKQCAETWFKIKGNTICEICGATAQNVASQQINEPSNAVA AVASSALTAPLT
Sbjct: 181 RGDLGTAHKQCAETWFKIKGNTICEICGATAQNVASQQINEPSNAVAAAVASSALTAPLT 240

Query: 241 LVETRTIFHGRRIMNFLLACMLLAFAMSWLFHFKLMS 278
           LVETRTIFHGRRIMNFLLACMLLAFAMSWLFHFKLMS
Sbjct: 241 LVETRTIFHGRRIMNFLLACMLLAFAMSWLFHFKLMS 276

[Close]

BLAST of CsaV3_1G035870 vs. ExPASy TrEMBL
Match: A0A1S3C517 (uncharacterized protein LOC103497107 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103497107 PE=4 SV=1)

HSP 1 Score: 449.9 bits (1156), Expect = 7.7e-123
Identity = 226/228 (99.12%), Postives = 226/228 (99.12%), Query Frame = 0


Query: 50  MSAVEAPRGDSDPANPSSLPFRDARSAAGSCSDMSVLDDSDDQSWHSVFDSTAWGSHGEG 109
           MSAVEAPRGDSDPANPSSLPFRDARSAAGSCSDMSVLDDSDDQSWHSVFDSTAWGSHGEG
Sbjct: 1   MSAVEAPRGDSDPANPSSLPFRDARSAAGSCSDMSVLDDSDDQSWHSVFDSTAWGSHGEG 60

Query: 110 QFSGEIEGVPDAEMGHFISESSSEVDLESGDLEVKVHLGKIERDCRICHLELESSGGRDN 169
           QFSGEIEGV DAEMGHFISESSSEVDLESGDLEVKVHLGKIERDCRICHLELESSGGRDN
Sbjct: 61  QFSGEIEGVLDAEMGHFISESSSEVDLESGDLEVKVHLGKIERDCRICHLELESSGGRDN 120

Query: 170 SDTPIQLGCCCRGDLGTAHKQCAETWFKIKGNTICEICGATAQNVASQQINEPSNAVATA 229
           SDTPIQLGCCCRGDLGTAHKQCAETWFKIKGNTICEICGATAQNVASQQINEPSNAVA A
Sbjct: 121 SDTPIQLGCCCRGDLGTAHKQCAETWFKIKGNTICEICGATAQNVASQQINEPSNAVAAA 180

Query: 230 VASSALTAPLTLVETRTIFHGRRIMNFLLACMLLAFAMSWLFHFKLMS 278
           VASSALTAPLTLVETRTIFHGRRIMNFLLACMLLAFAMSWLFHFKLMS
Sbjct: 181 VASSALTAPLTLVETRTIFHGRRIMNFLLACMLLAFAMSWLFHFKLMS 228

[Close]

BLAST of CsaV3_1G035870 vs. ExPASy TrEMBL
Match: A0A6J1HM49 (uncharacterized protein LOC111464834 OS=Cucurbita moschata OX=3662 GN=LOC111464834 PE=4 SV=1)

HSP 1 Score: 401.0 bits (1029), Expect = 4.1e-108
Identity = 208/235 (88.51%), Postives = 215/235 (91.49%), Query Frame = 0


Query: 48  HSMSAVEAPRGDSDPANPSSLPFRDARSAAG---SCSDMSVLDDSDDQSWHSVFDSTAWG 107
           H MSAV APRGD   A+PSSLP+RDARSAAG   S SD+SVLDDSDDQSWHSVFDSTAWG
Sbjct: 110 HRMSAVLAPRGDPILADPSSLPYRDARSAAGSSSSSSDLSVLDDSDDQSWHSVFDSTAWG 169

Query: 108 SHGEGQFSGEIEGVPDAEMGHFISESSSEVDLESGDLEVKVHLGKIERDCRICHLELESS 167
           SHG+G FSGEIEGVPDAE G FIS SSSEVDLESGDLEVKVHLGKIERDCRICHLELES 
Sbjct: 170 SHGDGLFSGEIEGVPDAETGGFISGSSSEVDLESGDLEVKVHLGKIERDCRICHLELESG 229

Query: 168 GGRDNSDTPIQLGCCCRGDLGTAHKQCAETWFKIKGNTICEICGATAQNVASQQINEPSN 227
           GGRD++DTPI LGCCCRGDLGTAHK CAETWFKIKGNTICEICGATAQNVASQQINEPSN
Sbjct: 230 GGRDHNDTPILLGCCCRGDLGTAHKHCAETWFKIKGNTICEICGATAQNVASQQINEPSN 289

Query: 228 --AVATAVASSALTAPLTLVETRTIFHGRRIMNFLLACMLLAFAMSWLFHFKLMS 278
             A A AVASSA+TAPLTLVETRTIFHGRRIMNFLLACMLLAFAMSWLFHFKLMS
Sbjct: 290 AAAAAAAVASSAMTAPLTLVETRTIFHGRRIMNFLLACMLLAFAMSWLFHFKLMS 344

[Close]

BLAST of CsaV3_1G035870 vs. TAIR 10
Match: AT5G05830.1 (RING/FYVE/PHD zinc finger superfamily protein )

HSP 1 Score: 146.7 bits (369), Expect = 2.7e-35
Identity = 85/172 (49.42%), Postives = 105/172 (61.05%), Query Frame = 0


Query: 109 GQFSGEIEGVPDAEMGHFISESSSEVDLESGDLEVKVHLGKIERDCRICHLELESSGGRD 168
           G    E E V D E     S  S E+DLE G  E  VHL + ERDCRICH+ L+++    
Sbjct: 34  GAVEKEEEIVKDEERRSNASVCSVEIDLELGLPEKVVHLSQSERDCRICHMSLDAA--NL 93

Query: 169 NSDTPIQLGCCCRGDLGTAHKQCAETWFKIKGNTICEICGATAQNVAS--QQINEPSNAV 228
            S  PI+LGC C+ DL  AHK CAETWFKIKGN ICE+CG+ A NV    +  +E S   
Sbjct: 94  ESGVPIELGCSCKADLAAAHKHCAETWFKIKGNKICEVCGSIAGNVVGSVEVESEESRNE 153

Query: 229 ATAVASSAL-TAPLTLVETRTIFHGRRIMNFLLACMLLAFAMSWLFHFKLMS 278
           A  V +  L T+   LVE R+ + G R +NFLLACM+ AF +SWLFHF + S
Sbjct: 154 ANGVENLTLRTSGPRLVEGRSFWQGHRFLNFLLACMVFAFVISWLFHFNVPS 203

[Close]

BLAST of CsaV3_1G035870 vs. TAIR 10
Match: AT5G59000.1 (RING/FYVE/PHD zinc finger superfamily protein )

HSP 1 Score: 138.7 bits (348), Expect = 7.3e-33
Identity = 85/198 (42.93%), Postives = 108/198 (54.55%), Query Frame = 0


Query: 129 ESSSEVDLESGDL---EVKVHLG------------------KIERDCRICHLELESSGGR 188
           +S S+VDLESG +   E ++H G                  K  RDCRICHL LE++   
Sbjct: 35  DSLSQVDLESGGVPAPEKQLHSGGKKRRTRRRKRRKKKKKKKGGRDCRICHLPLETNKEA 94

Query: 189 DNSD-----------------------------TPIQLGCCCRGDLGTAHKQCAETWFKI 248
           ++ D                              P+QLGC C+GDLG AH +CAETWFKI
Sbjct: 95  EDEDEEEEDDSDDDEDEEDEEEEEEEEEEEYYGLPLQLGCSCKGDLGVAHSKCAETWFKI 154

Query: 249 KGNTICEICGATAQNVASQQINEPSNAVATAVASSALTAPLTLVETRTIFHGRRIMNFLL 277
           KGN  CEICGA A NVA +Q N  S A   + A++  +  LT  E R I+HGR +MNFLL
Sbjct: 155 KGNMTCEICGAMALNVAGEQSNPESTASTHSQAAAGQS--LTQTEPRGIWHGRPVMNFLL 214

[Close]

BLAST of CsaV3_1G035870 vs. TAIR 10
Match: AT2G37950.1 (RING/FYVE/PHD zinc finger superfamily protein )

HSP 1 Score: 121.7 bits (304), Expect = 9.3e-28
Identity = 82/212 (38.68%), Postives = 112/212 (52.83%), Query Frame = 0


Query: 74  RSAAGSCSDMSVLDDSDDQSWHSVFDSTAWGSHGEGQFSGEIEGVPDAEMGHFISESSSE 133
           RS  GS   +   D  D  S +S F ST  GS+       E EG    ++   +S SSSE
Sbjct: 18  RSLDGSDVSVYYSDGEDVMSCYSYFYSTTGGSY-------EYEGDQSRKVSSVMSPSSSE 77

Query: 134 VDLESGDLEVKVHLGKIERDCRICHLELESSGGRDNSDTPIQLGCCCRGDLGTAHKQCAE 193
           +D +             E+DCRICHL +E+SGG       I+LGC C+ DL  AH+QCAE
Sbjct: 78  IDDDDA-------TAPPEKDCRICHLGVETSGG-----GAIELGCSCKDDLAVAHRQCAE 137

Query: 194 TWFKIKGNTICEICGATAQNV--------ASQQINEPSNAVATAVASSALTAPLTLVETR 253
           TWFKIKG+  CEIC + A+NV        ++ +  E  N   TA          T+VE R
Sbjct: 138 TWFKIKGDKTCEICQSVARNVGGANEMVGSTMEERELRNGEETAAGEG---GGATVVENR 197

Query: 254 TIFHGRRIMNFLLACMLLAFAMSWLFHFKLMS 278
             +  +R++N +LACM+  F +SW+FHF + S
Sbjct: 198 --WQPQRVVNLVLACMVFGFFISWIFHFHVSS 205

[Close]

BLAST of CsaV3_1G035870 vs. TAIR 10
Match: AT5G01070.2 (RING/FYVE/PHD zinc finger superfamily protein )

HSP 1 Score: 117.1 bits (292), Expect = 2.3e-26
Identity = 82/205 (40.00%), Postives = 99/205 (48.29%), Query Frame = 0


Query: 81  SDMSVLDDSD---DQSWHSVFDSTAWGSHGEGQFSGEIEGVPDAEMGHFISESSSEVDLE 140
           SD+S  D S    D  +HS   S          F GE E   D      + + +    + 
Sbjct: 23  SDVSGEDSSSCDYDYDFHSAVRS----------FCGEFEIADD------LDDETDTESVA 82

Query: 141 SGDLEVKVHLGKIERDCRICHLELESSGGRDNSDTPIQLGCCCRGDLGTAHKQCAETWFK 200
           SG +      G  E+DCRICHL LESS  R     P+ LGC C+ DLG  HKQCA+TWFK
Sbjct: 83  SGSIR-----GSPEKDCRICHLGLESS--RHECGDPMVLGCSCKDDLGYVHKQCADTWFK 142

Query: 201 IKGNTICEICGATAQNVASQQINEPSNAVATAVASSALTAPLTLVET-----RTIFHGRR 260
           IKGN  CEIC + AQN            V T V         T+V T     R +  G R
Sbjct: 143 IKGNKTCEICRSIAQNFFKVDNEIGQTTVETNVDDVEAGNTPTMVATSDSDDRRLCRGNR 202

Query: 261 IMNFLLACMLLAFAMSWLFHFKLMS 278
            +NFLL CM+ AF +SW FHF L S
Sbjct: 203 FLNFLLTCMVCAFVISWFFHFNLPS 204

[Close]

BLAST of CsaV3_1G035870 vs. TAIR 10
Match: AT2G34200.1 (RING/FYVE/PHD zinc finger superfamily protein )

HSP 1 Score: 82.4 bits (202), Expect = 6.2e-16
Identity = 37/69 (53.62%), Postives = 48/69 (69.57%), Query Frame = 0


Query: 151 ERDCRICHLELESS---GGRDNSDTP--IQLGCCCRGDLGTAHKQCAETWFKIKGNTICE 210
           ER CRICH   + S    G D S +P  I++GC C+ +LG AH  CAE WFK++GN++CE
Sbjct: 99  ERICRICHFGSDQSPEASGDDKSVSPELIEIGCKCKNELGLAHFHCAEAWFKLRGNSVCE 158

Query: 211 ICGATAQNV 215
           ICG TA+NV
Sbjct: 159 ICGCTAKNV 167

The following BLAST results are available for this feature:

BLAST of CsaV3_1G035870 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004145266.2	3.0e-153	100.00	uncharacterized protein LOC101212160 isoform X1 [Cucumis sativus] >KGN65776.1 hy...	[more]
XP_008457414.1	7.6e-149	98.19	PREDICTED: uncharacterized protein LOC103497107 isoform X1 [Cucumis melo] >KAA00...	[more]
XP_011658411.1	2.9e-124	100.00	uncharacterized protein LOC101212160 isoform X2 [Cucumis sativus]	[more]
XP_008457415.1	1.6e-122	99.12	PREDICTED: uncharacterized protein LOC103497107 isoform X2 [Cucumis melo]	[more]
XP_038895035.1	2.8e-119	96.49	uncharacterized protein LOC120083374 [Benincasa hispida] >XP_038895036.1 unchara...	[more]

BLAST of CsaV3_1G035870 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_1G035870 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0M0P0	1.4e-153	100.00	RING-CH-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G52792...	[more]
A0A5D3BFF6	3.7e-149	98.19	E3 ubiquitin-protein ligase MARCH1 OS=Cucumis melo var. makuwa OX=1194695 GN=E56...	[more]
A0A1S3C6R6	3.7e-149	98.19	uncharacterized protein LOC103497107 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A1S3C517	7.7e-123	99.12	uncharacterized protein LOC103497107 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A6J1HM49	4.1e-108	88.51	uncharacterized protein LOC111464834 OS=Cucurbita moschata OX=3662 GN=LOC1114648...	[more]

BLAST of CsaV3_1G035870 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G05830.1	2.7e-35	49.42	RING/FYVE/PHD zinc finger superfamily protein	[more]
AT5G59000.1	7.3e-33	42.93	RING/FYVE/PHD zinc finger superfamily protein	[more]
AT2G37950.1	9.3e-28	38.68	RING/FYVE/PHD zinc finger superfamily protein	[more]
AT5G01070.2	2.3e-26	40.00	RING/FYVE/PHD zinc finger superfamily protein	[more]
AT2G34200.1	6.2e-16	53.62	RING/FYVE/PHD zinc finger superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011016	Zinc finger, RING-CH-type	SMART	SM00744	ringv_2	coord: 153..208 e-value: 2.6E-15 score: 66.8
IPR011016	Zinc finger, RING-CH-type	PFAM	PF12906	RINGv	coord: 154..207 e-value: 1.4E-9 score: 37.9
IPR011016	Zinc finger, RING-CH-type	PROSITE	PS51292	ZF_RING_CH	coord: 146..214 score: 19.093723
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 144..219 e-value: 5.6E-15 score: 56.7
None	No IPR available	PANTHER	PTHR46214	ZINC FINGER, RING-CH-TYPE	coord: 82..275
None	No IPR available	PANTHER	PTHR46214:SF5	OS01G0850200 PROTEIN	coord: 82..275
None	No IPR available	CDD	cd16495	RING_CH-C4HC3_MARCH	coord: 154..208 e-value: 9.16392E-13 score: 59.6484
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 151..211

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_1G035870.1	CsaV3_1G035870.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0008270	zinc ion binding