CsaV3_1G034180 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_1G034180
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	RING-type domain-containing protein
Location	chr1: 21422049 .. 21428595 (+)
RNA-Seq Expression	CsaV3_1G034180
Synteny	CsaV3_1G034180

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCACCTTCTTTACACATTTTCTTCAACTGCAACAGAAGTTCAATTAGTTAATAAGCTGAACGAGGTAGTAGAGTCAGAGAGTAACAACAATTTCAAATTTCAATATTTTTCTTATAGATCAAAAGACCAAAAAGCAGGTAATATTAAAGTTCAAGAACCTACTAGTTCACTTAAGCTTTAAGCTTTCAAGGCCTGTTTTACAGAACAGCATAATCATTTTGTAGCTTTTCCAAGTGCAATGGGAGTTTCAAATCATTTTGTAACTTTAACAGTATTATATCTAAATGATTGAAAGATACCGGTTGTAATGCCCCAAGATTTGGAATCCCCAACATCCCCACAAACCAACACAAATCATTTCAAAGTGTTTTGTCTTCACTTACATGCTTCTTTGAAAAATTCTCATAAATTCACCCAACAAAGAATTGTGTTAAGCTAAACACACATAATTGTACAGTTTCTAGGGGTAAGCCATTGAAAAGAAAGTTACACTCCGTTGGCAGAGGTAAGAACTATACCTGCATTCCTTTGATATTTATCTAATTTGGATGTGACGTTGGTTTATTTATGTAAACTCTGAACTTTAAACTTAGGTGTTAGATAATTCAAAACAGAAACTACCGCAACAAATAGAAAAATAGAGGTAACTATATAATCTACTAATTAAAAATCCCGTTCCTAATTATAAACATTCTCAAAATGAAAATTTCAGCATTCATTCTCAAAAGCCATAAACTGGCAGACTCCACAACTTGAGTCTGAAGCAAGAGATACTAACCGTATTTTCAAATTTGTGAGAAGAAATTGCTCCTACAGAATCAAAAGCAACGCCATAAAATCAGTAAAGAAAGATAGAAATTGAAACCAATTTCGCAGAAAAGGCGAGAAAAACCAAACCATTTTTAACAACAAAATAAGCATCCTCAGCAGCGGCTCGAGTAGCAGCGACCTGAAAAGTAGAACCAAACGAACAGAACCCATTTCAAATTTAGCCGTAATAAACACTCACAAAAAAAAAAAAAAAATCAAGAATATATAAAACAAGAAACACATACGGATCCGATCTTCAAGAAGCCATCGACGGTGAGATTGAGAAAGGGATACCCCGTATCGATGACGACATCGATCTTGGGGGTCGATGAGGAGCCGACGAAGCCGGTGGGAGGCATGGTGTTGTTCTAAAGATTGTGTGAGAGAAGGGATTGAAAGTGGAGGATGGTGGTAGAAATGGGCCGTTCCTGATTTTTGCCGCTACAAATTGTTCAAGATTTTTGGAGGTACTTAAAATGCGAAATGAATTTGGAATTTAGTGGCTTTTTGGATCTTTGATTTAATTGGATTCTTAAAGAAGAAGAGACGAGTTCAACTTTTTTTGTTTGCGTTGCCCGAGGCCAGTATTTGGCGTTGGTGTTGCCCTCCATCCATTTTCATTTTTCAACCGTTGATTTCCTTTCTCTTTTAAATTACAATAGCTAGAGGTCTTAGAAATAAGACAATGTCCAAATCAAATTTAGTTTAATTATAATGGGATTCTACTCTCTAAGACAACAAGTATAATCAATTGGAGAACACTCTTCAAATTAGTATTGATAGAATTTATGTTTCACATAATATAAATATGACCTATACATCCATTTTAATGTGTGCATGCAACTTAGAGTTGGAAGTAAGAATACTTAATTCTTAATATTTTGACATAATAAGTGATAATTGTATACATTAATTAGGCATAATTTTGGAATAAGTTTTGAATATAGGAGTTTGGTTGGAAGGTTTTATTTAAGAGGTAGTTGGAAAAAATGGTTTTATTTTAATGTTTGCATCTACCATTATATTTTTTATTAAAAAAGTATTTCTTTGTATCTTAGTTTTATTTTATCTATCACACCCTTAGTCATTAGCCATGGGCATTGGAGATAGTTAAAAAAAAACTTATGGGGGTATTTTATGTCATTGTTAAAAATAATTAAATCCTATTATAATATAGGACATTGTATTGAATAAAAAAAAAATTAGATTCTATCAAAACTTAGAATTATAATTGTAAATATTTTGAATAGTTTTGAAAAAATATAAATTTATTCATTAATATTGTTTTTGTTCATTTCTAAACACTACTGTTTAAACATGGTCATTCCTATTGGTGTTCTTATTGAATTAATATATACAAAAAATTGATATTATCTATAAATTAATTTCAAAATTTTCAAAATACATCCAACATTAAACCTGCACTGTAACCATAAGGGCAAAGAGTTTTGGTCGCTGTAAAAGGTAAAATAAAATAAACCACTTAAGAAACAAATTATATTTGAAATCAAATTCAAACTATATTTTGAGACTAAACAAAATCTTTCTTCAAACTTGGAAGATACGAAAACTCAATTAAAATTTTTGTTTAACTTTGGAAAACAAAAACACTAAATATGACTGACTTCAAAGCCTTAGGCAAAGGGGAGACAATTAAAAAGCAAGATTCCTTGCTTCAATGGTTGTTTGTTTCCCTTCGTGCTTTAAAGTACAATACAAACATAATATCAAAATCACAAGCTTCACAAATATATTCCTTTCTTAACTCAAGTCTATGGATTTCATTCACACCTGTTCTAAACACGAATAATGGAAAAGGATATCTTCAAAATGTATTTGTTGAAGAAAGAGGGAGTAAAATCAATAGATGAATAATCAACTTCTAATTGAAGCAAAGCATACTTGTGGATGTAAAAATGTGATACAAAGCACTATAACATGTCTAGTCACAGATTTCAAACGACTGTCATCTTTCCTAGGGTATTATCATAAGATACAATCACGGTTGGACTATATGATGATAATTAAAAGTTGCATATTTGATGGTAATTATTTACGATGACATTTTGTAACTGACAGGCAATATTGTGTACTGTTGTACCTATATGATGACAGTTGTTCTCTATGATGCTCGATTGACCTGTTTAAGAATCGACATCATACATGTGTCTATGTCACCATACACTAGTGAAGAAAACTCTTTCTTAAAGGGAGTTCAAAAACATGTTTGAAGGTTGTCTTAAATTTGGGGAGCATAAATTCTTCATTAGATCAGTAAGCTTTTTGTGAGTCTAAATAATATGTACTAGCATACAAATATTCCTTTGGAATTGCTTAAATCTGTAAGTGAAATTTTTTTCATCGAGCACTCTAATCCTTAGATGTAGGTGTAGTTTGAGTGAACTGGATTACCATTTTATATGTCCATTCTTCTATACTTACTAATTTTACGAACACTCCTAACTCATACTCATGCATGTGACATTATTATGTTTTATTTTTGTGGTTTACTGCTTTATATTCACAAATTTTGCATTAATTATATAATATTGTAAAATAATACTTTGTACATAATTTAGAGCCTAAAACATGTACACAAATTAATTAATAATGATTTATATTTAACATATTTTTGTAGATTTATTAAAGGTGTAGGGGACACAAATTTTGTATTAATTTTGAAGTTTTAGATTACATTGGTTCTGGGGTAGTGGCTATGCCTCTCCTCCAAAATTCTTGCTTATGACAATTATTTATGCGAAATAGTTTTTATTCCAAGCATTATATGTCGACACTTGTTTGGGATCATTATTTTTCAAGTTACAACACATTTTTTTTACATACATGATTCAACTTACCCCCGTATTAATGTTTGAAAAGTTTTTTTATTGACAATAAAAAATGTACCTTATATTATTAGTAAATGTTTTAAAATAATTCAAAAGATAAATTAATTGCAATACTATGTCCTAATCTAATCAAACTAACTTATAAATGGACTTGATCGATCTCATGGTCCACGAGTTCTTCAACTACTTGCAAACTTGGTGAGCTCCTTCAAACGACGGGCGGAGAGCTTTTGCAAGAGAGGAAAAATCGTGAAGATCATTTGCAAGAGGGGAAAATGTCGTCAAAGAGCATTTACGAGAGAGAAAGATAGCGGCGGCGTGGGATGAAGTAAGAGTTTTTTTCGGTTGTGGTTCGCCAGAGGGATGAAGGCGTCGAGTTTTTTTAAATCAGAAAGCATACGAATGAAGGAAAACATTGATTTTTTATTAGGGTAATTTTTAATGACACATAATTTATGTCGTTAATTAACGACGCAAAAATTTTGTCAAGAAAATTCAATTTGTGTCAAGAAAATTGTCACAAAAAATTGTACTTTTATTTCTAACGGCACATTTTGTTCCCCCGCCCTTTTTTTCTTGATTTCAAGTGTCATTAAAACGCATATTTCTAAATAAATTTATTCGACGACTGTGGCTAGATTGGTTGGTTCAACGGTGAAGCCTTGTTGTGGCGGCAACGACGGTAGTGGCTAGAGTGTGGAATCGATGACGACGAGTGGCAAAAAATTGGGAGGCAAGTTTTTCGCAACGACGCGGTAGCCCACTTTGTTTGATGAGATTTTTATTTTTGCGTTTTTGGTAGAGAGAAAAAAAATTGCATTAAGGCTTGGCAGAGTTTTTGATTGAGAGAAAAGTTGGGATTTTTATTTATTTTTAATTGGGTGAGGGGGGAATTAAATTTTTTTAAAGTTTGAGGTTTTTTCATTTGGAAATTTGTTTAATGACACAATTTGTTAATGACCCAAAAATTGTGCCAAAACAAATTAAATTATGTTGATAGAATTGTGTCGAAAAGTAATCCATATTTTTATTTTCAATGTGCCAAAACAAATTAAATTACGTCGATAGAATTGTGTCGAGAAATAATATTATTTTTATTTCCAACGACATAATTTACCTCACCCCACCCTACCTATTTTCTTATTTTCAACGACACAGTGTCTTGATTAGTTGTGTCACTCAAATCCATTTTTCGAGTATTGCAAAGAGATAAAGAAGAAGAGATTGTGGTACATGTTCTTCCTTAACGTTAGAAAATCATGCAATTGAGGATAAAATTTTTGTAATTTTTAAAAATTAGACAATTCTCCACATTTAAAAAACTTTTATCCTATAAGTATTGAAAAATTATGCATTTTTTTCCATTTTACTTAACAAAATTTATTAGAATTGTGAAGTATTTCAGGTCATGTTTTTTTGTGGCAGTGCCAAATAAGCGAGAAAATAAAAAAAATATCAATTTAACTATATACACCTAAAGTAATAAAAGGGTTTGTTAATCCAATTTGGTGAATTTCACCTACCGATAAGAAATATTATTAAGATTCAATAAAATAATCAACTTGTCAATAAAGTAATCAACTTGTCTATAAAGTAATCAAATTGTCTATAAACCGAGGCTCCTTATATTTGAATCTTAGACTCCGTCTGAGAATTTGTTAACTATTTCAATCTTCGATACGAACTAAAAATTATCTTTAATAATACATCATAATAAAGATGGTAATTGAAATACCAAATGTAGAGTTCCCATATTTAAGAGCTTCAATAAAAAAAAATTATTTAAAAATATAGATAAAAGATTTGTGTGAAAAAGAAAAATATTGTCTTTTTAACATAAATAAATCTATATCTTTTCTAAAGAACCAAACGAACATTAAATAATAATAATAAAAAGAATTTAATTTAGGTCAACCACATTTTCAACCATGGCTTAAATTGAGATTTAATTTCTAAATTATTTCCAAGCAATTATTTTCTATGAAAATATGCAATGCAACTTATTTTCATTGAATCGCTTTGTCTTCAAACTATAAAAAAGAAGAAAAAAATCGCTCACACACATATATATACAAAAATGAAATAAAATATTTATCATCAAATAAAAGATTTGGTAAATCAAAATATAATAATAAAAAATTTAAATGATTAAAGATTTTTCTGAAGGAATTAATTTTTTTAAAAACAAAACCCTTATAAATAAAATCCATAAACTTCCCCTCCTTATTCTCTGGTGAACTCTTTTATCTTCTAAAAGAAATATATCATGTCACCCCCGCCGTATATTGCCGCTTCTCCAATGCCAACGAACGGGTTCGAAGCCATTTTTGATGACTTTGAGCTTTTGGCAGCCATATGTTTTGCCATTATAGTCTACTTCCTCTCCTTCACTTTCTACTTCAAAACAGGAAATAATGAATCAGAATTCGACACTGGGACGGTCGAAGATCGATTGCCTGTGTTCCGAGAGCGGGAGATTGTACAGATTGAGACAATGGTTTTCAGTTATTACAGGGAAGCTAAGGGAAGTGAGAATGATGATGATTACGAATGTGTGATTTGCTTGAATAAATTTGAAGATGGCCAAAAATGCCAATGGATGAAAAAGTGTGGTCATATATTTCATTGTAGCTGCATCGATCGGTGGCTCAGGACGGAGCGGGAATGTCCGCTTTGCCGAAGCTGCGTTTGCGTCGTCGTCAATCCATAATATATTTTCTTTCATTTTTTTAGAAGATTAATTATCAGACTTTGGGATTTCATTTGGTCACTTTTACTTGAAAAGTTGAAGAATAACAATATATACTAATTAGTTCATTGTACATCTAGTTTGTTCATTGAAGATCACAACAAATTATAGTTTTGAGAAGATTTGATTTTTGAAAA

mRNA sequence

ATGCACCTTCTTTACACATTTTCTTCAACTGCAACAGAAGTTCAATTAGTTAATAAGCTGAACGAGGTAGTAGAGTCAGAGAGTAACAACAATTTCAAATTTCAATATTTTTCTTATAGATCAAAAGACCAAAAAGCAGGAAATAATGAATCAGAATTCGACACTGGGACGGTCGAAGATCGATTGCCTGTGTTCCGAGAGCGGGAGATTGTACAGATTGAGACAATGGTTTTCAGTTATTACAGGGAAGCTAAGGGAAGTGAGAATGATGATGATTACGAATGTGTGATTTGCTTGAATAAATTTGAAGATGGCCAAAAATGCCAATGGATGAAAAAGTGTGGTCATATATTTCATTGTAGCTGCATCGATCGGTGGCTCAGGACGGAGCGGGAATGTCCGCTTTGCCGAAGCTGCGTTTGCGTCGTCGTCAATCCATAA

Coding sequence (CDS)

ATGCACCTTCTTTACACATTTTCTTCAACTGCAACAGAAGTTCAATTAGTTAATAAGCTGAACGAGGTAGTAGAGTCAGAGAGTAACAACAATTTCAAATTTCAATATTTTTCTTATAGATCAAAAGACCAAAAAGCAGGAAATAATGAATCAGAATTCGACACTGGGACGGTCGAAGATCGATTGCCTGTGTTCCGAGAGCGGGAGATTGTACAGATTGAGACAATGGTTTTCAGTTATTACAGGGAAGCTAAGGGAAGTGAGAATGATGATGATTACGAATGTGTGATTTGCTTGAATAAATTTGAAGATGGCCAAAAATGCCAATGGATGAAAAAGTGTGGTCATATATTTCATTGTAGCTGCATCGATCGGTGGCTCAGGACGGAGCGGGAATGTCCGCTTTGCCGAAGCTGCGTTTGCGTCGTCGTCAATCCATAA

Protein sequence

MHLLYTFSSTATEVQLVNKLNEVVESESNNNFKFQYFSYRSKDQKAGNNESEFDTGTVEDRLPVFREREIVQIETMVFSYYREAKGSENDDDYECVICLNKFEDGQKCQWMKKCGHIFHCSCIDRWLRTERECPLCRSCVCVVVNP*

Homology

[Close]

BLAST of CsaV3_1G034180 vs. NCBI nr
Match: KAE8653246.1 (hypothetical protein Csa_019623 [Cucumis sativus])

HSP 1 Score: 308.5 bits (789), Expect = 3.0e-80
Identity = 146/146 (100.00%), Postives = 146/146 (100.00%), Query Frame = 0


Query: 1   MHLLYTFSSTATEVQLVNKLNEVVESESNNNFKFQYFSYRSKDQKAGNNESEFDTGTVED 60
           MHLLYTFSSTATEVQLVNKLNEVVESESNNNFKFQYFSYRSKDQKAGNNESEFDTGTVED
Sbjct: 1   MHLLYTFSSTATEVQLVNKLNEVVESESNNNFKFQYFSYRSKDQKAGNNESEFDTGTVED 60

Query: 61  RLPVFREREIVQIETMVFSYYREAKGSENDDDYECVICLNKFEDGQKCQWMKKCGHIFHC 120
           RLPVFREREIVQIETMVFSYYREAKGSENDDDYECVICLNKFEDGQKCQWMKKCGHIFHC
Sbjct: 61  RLPVFREREIVQIETMVFSYYREAKGSENDDDYECVICLNKFEDGQKCQWMKKCGHIFHC 120

Query: 121 SCIDRWLRTERECPLCRSCVCVVVNP 147
           SCIDRWLRTERECPLCRSCVCVVVNP
Sbjct: 121 SCIDRWLRTERECPLCRSCVCVVVNP 146

[Close]

BLAST of CsaV3_1G034180 vs. NCBI nr
Match: XP_004151032.1 (RING-H2 finger protein ATL66 [Cucumis sativus])

HSP 1 Score: 224.9 bits (572), Expect = 4.4e-55
Identity = 101/102 (99.02%), Postives = 101/102 (99.02%), Query Frame = 0


Query: 45  KAGNNESEFDTGTVEDRLPVFREREIVQIETMVFSYYREAKGSENDDDYECVICLNKFED 104
           K GNNESEFDTGTVEDRLPVFREREIVQIETMVFSYYREAKGSENDDDYECVICLNKFED
Sbjct: 46  KTGNNESEFDTGTVEDRLPVFREREIVQIETMVFSYYREAKGSENDDDYECVICLNKFED 105

Query: 105 GQKCQWMKKCGHIFHCSCIDRWLRTERECPLCRSCVCVVVNP 147
           GQKCQWMKKCGHIFHCSCIDRWLRTERECPLCRSCVCVVVNP
Sbjct: 106 GQKCQWMKKCGHIFHCSCIDRWLRTERECPLCRSCVCVVVNP 147

[Close]

BLAST of CsaV3_1G034180 vs. NCBI nr
Match: XP_008457571.1 (PREDICTED: RING-H2 finger protein ATL66-like [Cucumis melo] >TYJ97408.1 RING-H2 finger protein ATL66-like [Cucumis melo var. makuwa])

HSP 1 Score: 163.7 bits (413), Expect = 1.2e-36
Identity = 84/115 (73.04%), Postives = 90/115 (78.26%), Query Frame = 0


Query: 45  KAGNNE---SEFDTGTVEDRLPVFRER------EIVQIETMVFSYYREAKGSEN----DD 104
           K GNN+    + D GTVE+ LP FRER      EIVQIE MVFS YREAK SEN    DD
Sbjct: 46  KTGNNDYQSDQSDVGTVEE-LPAFRERVVRDQQEIVQIEAMVFS-YREAKRSENDDDDDD 105

Query: 105 DYECVICLNKFEDGQKCQWMKKCGHIFHCSCIDRWLRTERECPLCRSCVCVVVNP 147
           DYECVICLNKFED QKC+WMKKCGHIFH SCIDRWL+TERECPLCR+CVCVVV P
Sbjct: 106 DYECVICLNKFEDAQKCRWMKKCGHIFHRSCIDRWLKTERECPLCRTCVCVVVKP 158

[Close]

BLAST of CsaV3_1G034180 vs. NCBI nr
Match: KAA0067735.1 (RING-H2 finger protein ATL66-like [Cucumis melo var. makuwa])

HSP 1 Score: 163.3 bits (412), Expect = 1.6e-36
Identity = 84/116 (72.41%), Postives = 90/116 (77.59%), Query Frame = 0


Query: 45  KAGNNE---SEFDTGTVEDRLPVFRER------EIVQIETMVFSYYREAKGSEN-----D 104
           K GNN+    + D GTVE+ LP FRER      EIVQIE MVFS YREAK SEN     D
Sbjct: 46  KTGNNDYQSDQSDVGTVEE-LPAFRERVVRDQQEIVQIEAMVFS-YREAKRSENDDDDDD 105

Query: 105 DDYECVICLNKFEDGQKCQWMKKCGHIFHCSCIDRWLRTERECPLCRSCVCVVVNP 147
           DDYECVICLNKFED QKC+WMKKCGHIFH SCIDRWL+TERECPLCR+CVCVVV P
Sbjct: 106 DDYECVICLNKFEDAQKCRWMKKCGHIFHRSCIDRWLKTERECPLCRTCVCVVVKP 159

[Close]

BLAST of CsaV3_1G034180 vs. NCBI nr
Match: XP_022998666.1 (RING-H2 finger protein ATL56-like [Cucurbita maxima])

HSP 1 Score: 126.7 bits (317), Expect = 1.6e-25
Identity = 62/98 (63.27%), Postives = 74/98 (75.51%), Query Frame = 0


Query: 50  ESEFDTGT-VEDRLPVFREREIVQIETMVFSYYREAKGSENDDDYECVICLNKFEDGQKC 109
           +SE ++G+     LPV RE EIV+IE  VFS YREA G  +D   EC ICL++FEDGQKC
Sbjct: 50  KSELESGSEPAGALPVVREPEIVRIEASVFS-YREADGGHDD---ECAICLDEFEDGQKC 109

Query: 110 QWMKKCGHIFHCSCIDRWLRTERECPLCRSCVCVVVNP 147
           + M KCGHIFH  CIDRWL+ +R CPLCRSCVCVVV+P
Sbjct: 110 RKMNKCGHIFHRRCIDRWLKVDRHCPLCRSCVCVVVHP 143

[Close]

BLAST of CsaV3_1G034180 vs. ExPASy Swiss-Prot
Match: Q9SRM0 (RING-H2 finger protein ATL66 OS=Arabidopsis thaliana OX=3702 GN=ATL66 PE=2 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 1.3e-12
Identity = 27/56 (48.21%), Postives = 39/56 (69.64%), Query Frame = 0


Query: 87  SENDDDYECVICLNKFEDGQKCQWMKKCGHIFHCSCIDRWLRTERECPLCRSCVCV 143
           +E +++ EC ICL  FE+G+K + +  C H +HC C+DRWL+TE  CPLCR  + V
Sbjct: 99  AEEEEEKECCICLGGFEEGEKMKVLPPCSHCYHCECVDRWLKTESSCPLCRVSIRV 154

[Close]

BLAST of CsaV3_1G034180 vs. ExPASy Swiss-Prot
Match: Q9LRB7 (E3 ubiquitin-protein ligase EL5 OS=Oryza sativa subsp. japonica OX=39947 GN=EL5.1 PE=1 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 1.8e-11
Identity = 27/59 (45.76%), Postives = 38/59 (64.41%), Query Frame = 0


Query: 88  ENDDDYECVICLNKFEDGQKCQWMKKCGHIFHCSCIDRWLRTERECPLCRSCVCVVVNP 147
           E+DD  EC +CL + EDG++ +++ +CGH FH  C+D WL +   CPLCR  V V   P
Sbjct: 127 EDDDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVVVPPPP 185

[Close]

BLAST of CsaV3_1G034180 vs. ExPASy Swiss-Prot
Match: Q9LX93 (E3 ubiquitin-protein ligase RING1 OS=Arabidopsis thaliana OX=3702 GN=ATL55 PE=1 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 2.4e-11
Identity = 27/62 (43.55%), Postives = 39/62 (62.90%), Query Frame = 0


Query: 85  KGSENDDDYECVICLNKFEDGQKCQWMKKCGHIFHCSCIDRWLRTERECPLCRSCVCVVV 144
           KG    D  EC +CLN+FE+ +  + + KC H FH +CID WL + + CPLCR+ V ++ 
Sbjct: 125 KGEGIIDGTECSVCLNEFEEDESLRLLPKCSHAFHLNCIDTWLLSHKNCPLCRAPVLLIT 184

Query: 145 NP 147
            P
Sbjct: 185 EP 186

[Close]

BLAST of CsaV3_1G034180 vs. ExPASy Swiss-Prot
Match: Q9LF64 (RING-H2 finger protein ATL52 OS=Arabidopsis thaliana OX=3702 GN=ATL52 PE=2 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 9.0e-11
Identity = 29/75 (38.67%), Postives = 44/75 (58.67%), Query Frame = 0


Query: 74  ETMV--FSYYREAKGSENDDDYECVICLNKFEDGQKCQWMKKCGHIFHCSCIDRWLRTER 133
           E+M+   + Y+   G    D  +C +CL++FE+ +  + + KC H FH  CID WL++  
Sbjct: 119 ESMIKSITVYKYKSGDGFVDGSDCSVCLSEFEENESLRLLPKCNHAFHLPCIDTWLKSHS 178

Query: 134 ECPLCRSCVCVVVNP 147
            CPLCR+ V  V NP
Sbjct: 179 NCPLCRAFVTGVNNP 193

[Close]

BLAST of CsaV3_1G034180 vs. ExPASy Swiss-Prot
Match: Q9M0R5 (Putative RING-H2 finger protein ATL36 OS=Arabidopsis thaliana OX=3702 GN=ATL36 PE=3 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 1.2e-10
Identity = 31/73 (42.47%), Postives = 43/73 (58.90%), Query Frame = 0


Query: 67  EREIVQIETMVFSYYREAKGSE-NDDDYECVICLNKFEDGQKCQWMKKCGHIFHCSCIDR 126
           E+E+  IE+     Y E KG +      EC ICL++FED +  +WM  C H FH +CID 
Sbjct: 96  EKEV--IESFPTFLYSEVKGLKIGKGGVECAICLSEFEDQETLRWMPPCSHTFHANCIDV 155

Query: 127 WLRTERECPLCRS 139
           WL +   CP+CR+
Sbjct: 156 WLSSWSTCPVCRA 166

[Close]

BLAST of CsaV3_1G034180 vs. ExPASy TrEMBL
Match: A0A0A0LXE1 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G515480 PE=4 SV=1)

HSP 1 Score: 224.9 bits (572), Expect = 2.1e-55
Identity = 101/102 (99.02%), Postives = 101/102 (99.02%), Query Frame = 0


Query: 45  KAGNNESEFDTGTVEDRLPVFREREIVQIETMVFSYYREAKGSENDDDYECVICLNKFED 104
           K GNNESEFDTGTVEDRLPVFREREIVQIETMVFSYYREAKGSENDDDYECVICLNKFED
Sbjct: 46  KTGNNESEFDTGTVEDRLPVFREREIVQIETMVFSYYREAKGSENDDDYECVICLNKFED 105

Query: 105 GQKCQWMKKCGHIFHCSCIDRWLRTERECPLCRSCVCVVVNP 147
           GQKCQWMKKCGHIFHCSCIDRWLRTERECPLCRSCVCVVVNP
Sbjct: 106 GQKCQWMKKCGHIFHCSCIDRWLRTERECPLCRSCVCVVVNP 147

[Close]

BLAST of CsaV3_1G034180 vs. ExPASy TrEMBL
Match: A0A5D3BGV5 (RING-H2 finger protein ATL66-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold194G002280 PE=4 SV=1)

HSP 1 Score: 163.7 bits (413), Expect = 5.8e-37
Identity = 84/115 (73.04%), Postives = 90/115 (78.26%), Query Frame = 0


Query: 45  KAGNNE---SEFDTGTVEDRLPVFRER------EIVQIETMVFSYYREAKGSEN----DD 104
           K GNN+    + D GTVE+ LP FRER      EIVQIE MVFS YREAK SEN    DD
Sbjct: 46  KTGNNDYQSDQSDVGTVEE-LPAFRERVVRDQQEIVQIEAMVFS-YREAKRSENDDDDDD 105

Query: 105 DYECVICLNKFEDGQKCQWMKKCGHIFHCSCIDRWLRTERECPLCRSCVCVVVNP 147
           DYECVICLNKFED QKC+WMKKCGHIFH SCIDRWL+TERECPLCR+CVCVVV P
Sbjct: 106 DYECVICLNKFEDAQKCRWMKKCGHIFHRSCIDRWLKTERECPLCRTCVCVVVKP 158

[Close]

BLAST of CsaV3_1G034180 vs. ExPASy TrEMBL
Match: A0A1S3C6H7 (RING-H2 finger protein ATL66-like OS=Cucumis melo OX=3656 GN=LOC103497236 PE=4 SV=1)

HSP 1 Score: 163.7 bits (413), Expect = 5.8e-37
Identity = 84/115 (73.04%), Postives = 90/115 (78.26%), Query Frame = 0


Query: 45  KAGNNE---SEFDTGTVEDRLPVFRER------EIVQIETMVFSYYREAKGSEN----DD 104
           K GNN+    + D GTVE+ LP FRER      EIVQIE MVFS YREAK SEN    DD
Sbjct: 46  KTGNNDYQSDQSDVGTVEE-LPAFRERVVRDQQEIVQIEAMVFS-YREAKRSENDDDDDD 105

Query: 105 DYECVICLNKFEDGQKCQWMKKCGHIFHCSCIDRWLRTERECPLCRSCVCVVVNP 147
           DYECVICLNKFED QKC+WMKKCGHIFH SCIDRWL+TERECPLCR+CVCVVV P
Sbjct: 106 DYECVICLNKFEDAQKCRWMKKCGHIFHRSCIDRWLKTERECPLCRTCVCVVVKP 158

[Close]

BLAST of CsaV3_1G034180 vs. ExPASy TrEMBL
Match: A0A5A7VPW6 (RING-H2 finger protein ATL66-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold352G00550 PE=4 SV=1)

HSP 1 Score: 163.3 bits (412), Expect = 7.6e-37
Identity = 84/116 (72.41%), Postives = 90/116 (77.59%), Query Frame = 0


Query: 45  KAGNNE---SEFDTGTVEDRLPVFRER------EIVQIETMVFSYYREAKGSEN-----D 104
           K GNN+    + D GTVE+ LP FRER      EIVQIE MVFS YREAK SEN     D
Sbjct: 46  KTGNNDYQSDQSDVGTVEE-LPAFRERVVRDQQEIVQIEAMVFS-YREAKRSENDDDDDD 105

Query: 105 DDYECVICLNKFEDGQKCQWMKKCGHIFHCSCIDRWLRTERECPLCRSCVCVVVNP 147
           DDYECVICLNKFED QKC+WMKKCGHIFH SCIDRWL+TERECPLCR+CVCVVV P
Sbjct: 106 DDYECVICLNKFEDAQKCRWMKKCGHIFHRSCIDRWLKTERECPLCRTCVCVVVKP 159

[Close]

BLAST of CsaV3_1G034180 vs. ExPASy TrEMBL
Match: A0A6J1KAT3 (RING-type E3 ubiquitin transferase OS=Cucurbita maxima OX=3661 GN=LOC111493250 PE=3 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 7.9e-26
Identity = 62/98 (63.27%), Postives = 74/98 (75.51%), Query Frame = 0


Query: 50  ESEFDTGT-VEDRLPVFREREIVQIETMVFSYYREAKGSENDDDYECVICLNKFEDGQKC 109
           +SE ++G+     LPV RE EIV+IE  VFS YREA G  +D   EC ICL++FEDGQKC
Sbjct: 50  KSELESGSEPAGALPVVREPEIVRIEASVFS-YREADGGHDD---ECAICLDEFEDGQKC 109

Query: 110 QWMKKCGHIFHCSCIDRWLRTERECPLCRSCVCVVVNP 147
           + M KCGHIFH  CIDRWL+ +R CPLCRSCVCVVV+P
Sbjct: 110 RKMNKCGHIFHRRCIDRWLKVDRHCPLCRSCVCVVVHP 143

[Close]

BLAST of CsaV3_1G034180 vs. TAIR 10
Match: AT3G11110.1 (RING/U-box superfamily protein )

HSP 1 Score: 74.3 bits (181), Expect = 9.0e-14
Identity = 27/56 (48.21%), Postives = 39/56 (69.64%), Query Frame = 0


Query: 87  SENDDDYECVICLNKFEDGQKCQWMKKCGHIFHCSCIDRWLRTERECPLCRSCVCV 143
           +E +++ EC ICL  FE+G+K + +  C H +HC C+DRWL+TE  CPLCR  + V
Sbjct: 99  AEEEEEKECCICLGGFEEGEKMKVLPPCSHCYHCECVDRWLKTESSCPLCRVSIRV 154

[Close]

BLAST of CsaV3_1G034180 vs. TAIR 10
Match: AT5G10380.1 (RING/U-box superfamily protein )

HSP 1 Score: 70.1 bits (170), Expect = 1.7e-12
Identity = 27/62 (43.55%), Postives = 39/62 (62.90%), Query Frame = 0


Query: 85  KGSENDDDYECVICLNKFEDGQKCQWMKKCGHIFHCSCIDRWLRTERECPLCRSCVCVVV 144
           KG    D  EC +CLN+FE+ +  + + KC H FH +CID WL + + CPLCR+ V ++ 
Sbjct: 125 KGEGIIDGTECSVCLNEFEEDESLRLLPKCSHAFHLNCIDTWLLSHKNCPLCRAPVLLIT 184

Query: 145 NP 147
            P
Sbjct: 185 EP 186

[Close]

BLAST of CsaV3_1G034180 vs. TAIR 10
Match: AT5G17600.1 (RING/U-box superfamily protein )

HSP 1 Score: 68.2 bits (165), Expect = 6.4e-12
Identity = 29/75 (38.67%), Postives = 44/75 (58.67%), Query Frame = 0


Query: 74  ETMV--FSYYREAKGSENDDDYECVICLNKFEDGQKCQWMKKCGHIFHCSCIDRWLRTER 133
           E+M+   + Y+   G    D  +C +CL++FE+ +  + + KC H FH  CID WL++  
Sbjct: 119 ESMIKSITVYKYKSGDGFVDGSDCSVCLSEFEENESLRLLPKCNHAFHLPCIDTWLKSHS 178

Query: 134 ECPLCRSCVCVVVNP 147
            CPLCR+ V  V NP
Sbjct: 179 NCPLCRAFVTGVNNP 193

[Close]

BLAST of CsaV3_1G034180 vs. TAIR 10
Match: AT4G09120.1 (RING/U-box superfamily protein )

HSP 1 Score: 67.8 bits (164), Expect = 8.4e-12
Identity = 31/73 (42.47%), Postives = 43/73 (58.90%), Query Frame = 0


Query: 67  EREIVQIETMVFSYYREAKGSE-NDDDYECVICLNKFEDGQKCQWMKKCGHIFHCSCIDR 126
           E+E+  IE+     Y E KG +      EC ICL++FED +  +WM  C H FH +CID 
Sbjct: 96  EKEV--IESFPTFLYSEVKGLKIGKGGVECAICLSEFEDQETLRWMPPCSHTFHANCIDV 155

Query: 127 WLRTERECPLCRS 139
           WL +   CP+CR+
Sbjct: 156 WLSSWSTCPVCRA 166

[Close]

BLAST of CsaV3_1G034180 vs. TAIR 10
Match: AT2G27940.1 (RING/U-box superfamily protein )

HSP 1 Score: 66.6 bits (161), Expect = 1.9e-11
Identity = 29/62 (46.77%), Postives = 40/62 (64.52%), Query Frame = 0


Query: 77  VFSYYREAKGSENDDDYECVICLNKFEDGQKCQWMKKCGHIFHCSCIDRWLRTERECPLC 136
           V+ Y + AK   N+D   CVICL+ FE+G+  + +  CGH+FH  C+D WL +   CPLC
Sbjct: 126 VYRYTKAAK-QRNED---CVICLSDFEEGETVKVIPHCGHVFHVDCVDTWLSSYVTCPLC 183

Query: 137 RS 139
           RS
Sbjct: 186 RS 183

The following BLAST results are available for this feature:

BLAST of CsaV3_1G034180 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8653246.1	3.0e-80	100.00	hypothetical protein Csa_019623 [Cucumis sativus]	[more]
XP_004151032.1	4.4e-55	99.02	RING-H2 finger protein ATL66 [Cucumis sativus]	[more]
XP_008457571.1	1.2e-36	73.04	PREDICTED: RING-H2 finger protein ATL66-like [Cucumis melo] >TYJ97408.1 RING-H2 ...	[more]
KAA0067735.1	1.6e-36	72.41	RING-H2 finger protein ATL66-like [Cucumis melo var. makuwa]	[more]
XP_022998666.1	1.6e-25	63.27	RING-H2 finger protein ATL56-like [Cucurbita maxima]	[more]

BLAST of CsaV3_1G034180 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SRM0	1.3e-12	48.21	RING-H2 finger protein ATL66 OS=Arabidopsis thaliana OX=3702 GN=ATL66 PE=2 SV=1	[more]
Q9LRB7	1.8e-11	45.76	E3 ubiquitin-protein ligase EL5 OS=Oryza sativa subsp. japonica OX=39947 GN=EL5....	[more]
Q9LX93	2.4e-11	43.55	E3 ubiquitin-protein ligase RING1 OS=Arabidopsis thaliana OX=3702 GN=ATL55 PE=1 ...	[more]
Q9LF64	9.0e-11	38.67	RING-H2 finger protein ATL52 OS=Arabidopsis thaliana OX=3702 GN=ATL52 PE=2 SV=1	[more]
Q9M0R5	1.2e-10	42.47	Putative RING-H2 finger protein ATL36 OS=Arabidopsis thaliana OX=3702 GN=ATL36 P...	[more]

BLAST of CsaV3_1G034180 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LXE1	2.1e-55	99.02	RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G515480 P...	[more]
A0A5D3BGV5	5.8e-37	73.04	RING-H2 finger protein ATL66-like OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A1S3C6H7	5.8e-37	73.04	RING-H2 finger protein ATL66-like OS=Cucumis melo OX=3656 GN=LOC103497236 PE=4 S...	[more]
A0A5A7VPW6	7.6e-37	72.41	RING-H2 finger protein ATL66-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A6J1KAT3	7.9e-26	63.27	RING-type E3 ubiquitin transferase OS=Cucurbita maxima OX=3661 GN=LOC111493250 P...	[more]

BLAST of CsaV3_1G034180 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G11110.1	9.0e-14	48.21	RING/U-box superfamily protein	[more]
AT5G10380.1	1.7e-12	43.55	RING/U-box superfamily protein	[more]
AT5G17600.1	6.4e-12	38.67	RING/U-box superfamily protein	[more]
AT4G09120.1	8.4e-12	42.47	RING/U-box superfamily protein	[more]
AT2G27940.1	1.9e-11	46.77	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 95..136 e-value: 1.9E-5 score: 34.1
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 94..137 e-value: 5.1E-14 score: 52.3
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 95..137 score: 12.84335
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 54..141 e-value: 2.5E-18 score: 67.5
None	No IPR available	PANTHER	PTHR14155	RING FINGER DOMAIN-CONTAINING	coord: 52..139
None	No IPR available	PANTHER	PTHR14155:SF550	RING-H2 FINGER PROTEIN ATL40	coord: 52..139
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 88..143

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_1G034180.1	CsaV3_1G034180.1	mRNA