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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below. ATGCTTTCTATTGTTATAGGTTGTGGGTATAGTTTTCTGGGATTGATTCACCTATTTGTGGCAGTTCCTAGACTTGCTTCTTTGCTCACTGTATTTAAAATCCATAGTTTCTATCTATTATTTTGCAAAGTATTAATTTAGCCATCAACTACCACCACTAACACCTTCACTCTGAGGAAGACATTCTGTTGAAAGCTCCTTCAATTGAATGGATGTCTTCCGGGGAAGTTTCTTTTTATGAGCGGAGCGACTTTACTGGGGGAAGAAGAGAAAGGAGAGACAGAGAAGGGGACATTCTGAGGGCATAG mRNA sequence ATGCTTTCTATTGTTATAGGTTGTGGGTATAGTTTTCTGGGATTGATTCACCTATTTGTGGCAGTTCCTAGACTTGCTTCTTTGCTCACTGAAGACATTCTGTTGAAAGCTCCTTCAATTGAATGGATGTCTTCCGGGGAAGTTTCTTTTTATGAGCGGAGCGACTTTACTGGGGGAAGAAGAGAAAGGAGAGACAGAGAAGGGGACATTCTGAGGGCATAG Coding sequence (CDS) ATGCTTTCTATTGTTATAGGTTGTGGGTATAGTTTTCTGGGATTGATTCACCTATTTGTGGCAGTTCCTAGACTTGCTTCTTTGCTCACTGAAGACATTCTGTTGAAAGCTCCTTCAATTGAATGGATGTCTTCCGGGGAAGTTTCTTTTTATGAGCGGAGCGACTTTACTGGGGGAAGAAGAGAAAGGAGAGACAGAGAAGGGGACATTCTGAGGGCATAG Protein sequence MLSIVIGCGYSFLGLIHLFVAVPRLASLLTEDILLKAPSIEWMSSGEVSFYERSDFTGGRRERRDREGDILRA*
Homology
BLAST of CsaV3_1G032640 vs. NCBI nr
Match: KGN65562.1 (hypothetical protein Csa_019680 [Cucumis sativus]) HSP 1 Score: 143.7 bits (361), Expect = 6.5e-31 Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 0 Query: 1 MLSIVIGCGYSFLGLIHLFVAVPRLASLLTEDILLKAPSIEWMSSGEVSFYERSDFTGGR 60 MLSIVIGCGYSFLGLIHLFVAVPRLASLLTEDILLKAPSIEWMSSGEVSFYERSDFTGGR Sbjct: 1 MLSIVIGCGYSFLGLIHLFVAVPRLASLLTEDILLKAPSIEWMSSGEVSFYERSDFTGGR 60
Query: 61 RERRDREGDILRA 74 RERRDREGDILRA Sbjct: 61 RERRDREGDILRA 73
BLAST of CsaV3_1G032640 vs. ExPASy TrEMBL
Match: A0A0A0LXM0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G448930 PE=4 SV=1) HSP 1 Score: 143.7 bits (361), Expect = 3.1e-31 Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 0 Query: 1 MLSIVIGCGYSFLGLIHLFVAVPRLASLLTEDILLKAPSIEWMSSGEVSFYERSDFTGGR 60 MLSIVIGCGYSFLGLIHLFVAVPRLASLLTEDILLKAPSIEWMSSGEVSFYERSDFTGGR Sbjct: 1 MLSIVIGCGYSFLGLIHLFVAVPRLASLLTEDILLKAPSIEWMSSGEVSFYERSDFTGGR 60
Query: 61 RERRDREGDILRA 74 RERRDREGDILRA Sbjct: 61 RERRDREGDILRA 73
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
KGN65562.1 | 6.5e-31 | 100.00 | hypothetical protein Csa_019680 [Cucumis sativus] | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A0A0LXM0 | 3.1e-31 | 100.00 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G448930 PE=4 SV=1 | [more] |
Match Name | E-value | Identity | Description | |
InterPro
Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25
IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 53..73 |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 54..73 |
Relationships
The following mRNA feature(s) are a part of this gene:
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