CsaV3_1G032570 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_1G032570
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	agamous-like MADS-box protein AGL29
Location	chr1: 19607563 .. 19608618 (+)
RNA-Seq Expression	CsaV3_1G032570
Synteny	CsaV3_1G032570

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTTGAACGAAAAACTTTTTCGTCCCAACACACGAATATATTAATTAATTGCTTTAATTTGAGGTTGACATTCATATTTTAGAGAGTTATATTAAAACAAAGGAAAACATTAATTATATTTCTTACAAGTGAAACTGCAAAGAGATGAACCTCCTTGATCATAATGGGAATCTCAAATTTTCCAACAAACAAGCCAAATTTAGAAAGAGATTTAAAAGCTTCCCATGTTAGTGAACAAATTGAACAAAATAATGTGTATAAAACAGACACCAAATTCCGATATTAGAAACATTCAACAACAAATCACAGATCTCCTGATCAGGAATCAATCTCTAAATTTTTCAGTAGACTACGTTATCAATGGGAAGGCGAAAGATCGAGATGAAAATGGTGAAGGATAGAGGTTCTAGACAAGTTACCTTCTCGAAGCGTCGAAACGGTCTGTTCAAGAAAGCGACCGATCTCGCAACTCTGTGCGGTTTAGAGATAGCGATTGTGGTTTTCTCTCCAGGCGGTAAGGCATTCTCGTTCGGCAATCCAAATGTAGAGGAGGTCGTAGATCGGTACCTAGGTTGTGAATGGAAGGCGAATGGGAATCCGGGGGTGAGGGAGAGGGGAATGTTGGAGAAGGAGAATGAGGAACTTTTAGATCTGGTTAAGCAGTTGCAAATGGAGAAGAAGAAGGGAGAGATTATGGAGAAAGAGATGAAATCGAGAGGGGAATTGATGAAAATTGAGGATATGGATTTGAATGAGCTCTTGAAATTGAAGGAATCGTTGGAAAAACTAAGAAAGAACGTGAAGATTGAAGAGAGCGAGTTGGAGGCTTCGTCTTCATTGCTGCTGCTTGCTAATGAAAAACCTGTTCCTGGAGATGGCTGAGTCTAATTCCTAAAATTGAATTTCAGAAATTTCATTAGCTCTATGATTTTAGTTTAGAAACTAAAAAAAGAAATGGAACTCTATAAAGATTTGAATGATTAATATCCATAATTAACATCATATTCTTTACTTCAACCTTGAATTGATGTATTAATTCTCAAATATATATAATTG

mRNA sequence

ATGGGAAGGCGAAAGATCGAGATGAAAATGGTGAAGGATAGAGGTTCTAGACAAGTTACCTTCTCGAAGCGTCGAAACGGTCTGTTCAAGAAAGCGACCGATCTCGCAACTCTGTGCGGTTTAGAGATAGCGATTGTGGTTTTCTCTCCAGGCGGTAAGGCATTCTCGTTCGGCAATCCAAATGTAGAGGAGGTCGTAGATCGGTACCTAGGTTGTGAATGGAAGGCGAATGGGAATCCGGGGGTGAGGGAGAGGGGAATGTTGGAGAAGGAGAATGAGGAACTTTTAGATCTGGTTAAGCAGTTGCAAATGGAGAAGAAGAAGGGAGAGATTATGGAGAAAGAGATGAAATCGAGAGGGGAATTGATGAAAATTGAGGATATGGATTTGAATGAGCTCTTGAAATTGAAGGAATCGTTGGAAAAACTAAGAAAGAACGTGAAGATTGAAGAGAGCGAGTTGGAGGCTTCGTCTTCATTGCTGCTGCTTGCTAATGAAAAACCTGTTCCTGGAGATGGCTGA

Coding sequence (CDS)

ATGGGAAGGCGAAAGATCGAGATGAAAATGGTGAAGGATAGAGGTTCTAGACAAGTTACCTTCTCGAAGCGTCGAAACGGTCTGTTCAAGAAAGCGACCGATCTCGCAACTCTGTGCGGTTTAGAGATAGCGATTGTGGTTTTCTCTCCAGGCGGTAAGGCATTCTCGTTCGGCAATCCAAATGTAGAGGAGGTCGTAGATCGGTACCTAGGTTGTGAATGGAAGGCGAATGGGAATCCGGGGGTGAGGGAGAGGGGAATGTTGGAGAAGGAGAATGAGGAACTTTTAGATCTGGTTAAGCAGTTGCAAATGGAGAAGAAGAAGGGAGAGATTATGGAGAAAGAGATGAAATCGAGAGGGGAATTGATGAAAATTGAGGATATGGATTTGAATGAGCTCTTGAAATTGAAGGAATCGTTGGAAAAACTAAGAAAGAACGTGAAGATTGAAGAGAGCGAGTTGGAGGCTTCGTCTTCATTGCTGCTGCTTGCTAATGAAAAACCTGTTCCTGGAGATGGCTGA

Protein sequence

MGRRKIEMKMVKDRGSRQVTFSKRRNGLFKKATDLATLCGLEIAIVVFSPGGKAFSFGNPNVEEVVDRYLGCEWKANGNPGVRERGMLEKENEELLDLVKQLQMEKKKGEIMEKEMKSRGELMKIEDMDLNELLKLKESLEKLRKNVKIEESELEASSSLLLLANEKPVPGDG*

Homology

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BLAST of CsaV3_1G032570 vs. NCBI nr
Match: XP_004147415.1 (agamous-like MADS-box protein AGL29 [Cucumis sativus] >KAE8653190.1 hypothetical protein Csa_019860 [Cucumis sativus])

HSP 1 Score: 328.2 bits (840), Expect = 4.4e-86
Identity = 173/173 (100.00%), Postives = 173/173 (100.00%), Query Frame = 0


Query: 1   MGRRKIEMKMVKDRGSRQVTFSKRRNGLFKKATDLATLCGLEIAIVVFSPGGKAFSFGNP 60
           MGRRKIEMKMVKDRGSRQVTFSKRRNGLFKKATDLATLCGLEIAIVVFSPGGKAFSFGNP
Sbjct: 1   MGRRKIEMKMVKDRGSRQVTFSKRRNGLFKKATDLATLCGLEIAIVVFSPGGKAFSFGNP 60

Query: 61  NVEEVVDRYLGCEWKANGNPGVRERGMLEKENEELLDLVKQLQMEKKKGEIMEKEMKSRG 120
           NVEEVVDRYLGCEWKANGNPGVRERGMLEKENEELLDLVKQLQMEKKKGEIMEKEMKSRG
Sbjct: 61  NVEEVVDRYLGCEWKANGNPGVRERGMLEKENEELLDLVKQLQMEKKKGEIMEKEMKSRG 120

Query: 121 ELMKIEDMDLNELLKLKESLEKLRKNVKIEESELEASSSLLLLANEKPVPGDG 174
           ELMKIEDMDLNELLKLKESLEKLRKNVKIEESELEASSSLLLLANEKPVPGDG
Sbjct: 121 ELMKIEDMDLNELLKLKESLEKLRKNVKIEESELEASSSLLLLANEKPVPGDG 173

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BLAST of CsaV3_1G032570 vs. NCBI nr
Match: XP_008444113.1 (PREDICTED: agamous-like MADS-box protein AGL29 isoform X1 [Cucumis melo] >KAA0053964.1 agamous-like MADS-box protein AGL29 isoform X1 [Cucumis melo var. makuwa] >TYK20648.1 agamous-like MADS-box protein AGL29 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 308.5 bits (789), Expect = 3.6e-80
Identity = 164/173 (94.80%), Postives = 166/173 (95.95%), Query Frame = 0


Query: 1   MGRRKIEMKMVKDRGSRQVTFSKRRNGLFKKATDLATLCGLEIAIVVFSPGGKAFSFGNP 60
           MGRRKIEMKMVKDRGSRQVTFSKRRNGLFKKATDLATLCGLEIAIVVFSPGGKAFSFGNP
Sbjct: 1   MGRRKIEMKMVKDRGSRQVTFSKRRNGLFKKATDLATLCGLEIAIVVFSPGGKAFSFGNP 60

Query: 61  NVEEVVDRYLGCEWKANGNPGVRERGMLEKENEELLDLVKQLQMEKKKGEIMEKEMKSRG 120
           NVEEVVDRYL CEWK N N  VRERGMLEKENEELLDLVKQLQMEKKKGE+MEKEMKSRG
Sbjct: 61  NVEEVVDRYLSCEWKVNRNTAVRERGMLEKENEELLDLVKQLQMEKKKGEVMEKEMKSRG 120

Query: 121 ELMKIEDMDLNELLKLKESLEKLRKNVKIEESELEASSSLLLLANEKPVPGDG 174
           ELMKIED+DLNELLKLKESLEKLRKNVKIEESELEAS SLLLLANEKPV GDG
Sbjct: 121 ELMKIEDLDLNELLKLKESLEKLRKNVKIEESELEASFSLLLLANEKPVRGDG 173

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BLAST of CsaV3_1G032570 vs. NCBI nr
Match: XP_016903730.1 (PREDICTED: agamous-like MADS-box protein AGL29 isoform X2 [Cucumis melo])

HSP 1 Score: 272.7 bits (696), Expect = 2.2e-69
Identity = 144/153 (94.12%), Postives = 146/153 (95.42%), Query Frame = 0


Query: 21  FSKRRNGLFKKATDLATLCGLEIAIVVFSPGGKAFSFGNPNVEEVVDRYLGCEWKANGNP 80
           FSKRRNGLFKKATDLATLCGLEIAIVVFSPGGKAFSFGNPNVEEVVDRYL CEWK N N 
Sbjct: 8   FSKRRNGLFKKATDLATLCGLEIAIVVFSPGGKAFSFGNPNVEEVVDRYLSCEWKVNRNT 67

Query: 81  GVRERGMLEKENEELLDLVKQLQMEKKKGEIMEKEMKSRGELMKIEDMDLNELLKLKESL 140
            VRERGMLEKENEELLDLVKQLQMEKKKGE+MEKEMKSRGELMKIED+DLNELLKLKESL
Sbjct: 68  AVRERGMLEKENEELLDLVKQLQMEKKKGEVMEKEMKSRGELMKIEDLDLNELLKLKESL 127

Query: 141 EKLRKNVKIEESELEASSSLLLLANEKPVPGDG 174
           EKLRKNVKIEESELEAS SLLLLANEKPV GDG
Sbjct: 128 EKLRKNVKIEESELEASFSLLLLANEKPVRGDG 160

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BLAST of CsaV3_1G032570 vs. NCBI nr
Match: XP_038893813.1 (agamous-like MADS-box protein AGL29 [Benincasa hispida])

HSP 1 Score: 262.7 bits (670), Expect = 2.3e-66
Identity = 143/172 (83.14%), Postives = 155/172 (90.12%), Query Frame = 0


Query: 1   MGRRKIEMKMVKDRGSRQVTFSKRRNGLFKKATDLATLCGLEIAIVVFSPGGKAFSFGNP 60
           MGRRKI+MKMVKDRG RQVTFSKRRNGLFKKA DLATLCGLEIAIVVFSPGGKAFSFGNP
Sbjct: 1   MGRRKIDMKMVKDRGCRQVTFSKRRNGLFKKANDLATLCGLEIAIVVFSPGGKAFSFGNP 60

Query: 61  NVEEVVDRYLGCEWKANGNPGVRERGMLEKENEELLDLVKQLQMEKKKGEIMEKEMKSRG 120
           NVE+V+DRYL  E +A   P VRE GM +K+NEEL+DLVKQLQMEKKKGE+MEKEMKSRG
Sbjct: 61  NVEDVIDRYLNREPEAIRIPAVRENGMTKKKNEELIDLVKQLQMEKKKGEMMEKEMKSRG 120

Query: 121 ELMKIEDMDLNELLKLKESLEKLRKNVKIEESELEASSSLLLLANEKPVPGD 173
           ELMKIED+DL+ELLKLKESLEKLRKNVKIEESE+EA SSLLLLA E  +  D
Sbjct: 121 ELMKIEDLDLDELLKLKESLEKLRKNVKIEESEVEALSSLLLLAKEPVMEAD 172

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BLAST of CsaV3_1G032570 vs. NCBI nr
Match: XP_023001476.1 (agamous-like MADS-box protein AGL29 [Cucurbita maxima])

HSP 1 Score: 253.4 bits (646), Expect = 1.4e-63
Identity = 141/172 (81.98%), Postives = 154/172 (89.53%), Query Frame = 0


Query: 1   MGRRKIEMKMVKDRGSRQVTFSKRRNGLFKKATDLATLCGLEIAIVVFSPGGKAFSFGNP 60
           MGRRKIEMKMVKDRGSRQVTFSKRRNGLFKKA DLATLCGLEIAI+VFSPGGKAFSFGNP
Sbjct: 1   MGRRKIEMKMVKDRGSRQVTFSKRRNGLFKKANDLATLCGLEIAIIVFSPGGKAFSFGNP 60

Query: 61  NVEEVVDRYLGCEWKANGNPGVRERGMLEKENEELLDLVKQLQMEKKKGEIMEKEMKSRG 120
           NVEEVVDRYL    K+   P   E GM EKENEEL+DLVKQLQ+EKKKGE++EKEMKSRG
Sbjct: 61  NVEEVVDRYL--NRKSEPIPPASE-GMFEKENEELIDLVKQLQLEKKKGEMLEKEMKSRG 120

Query: 121 ELMKIEDMDLNELLKLKESLEKLRKNVKIEESELEASSSLLLLANEKPVPGD 173
           E +KIED+DL+ELLKLKESLE+LRKNV+++ESELEASSSLLLLANE  V  D
Sbjct: 121 ESIKIEDLDLDELLKLKESLERLRKNVRMKESELEASSSLLLLANEPVVEAD 169

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BLAST of CsaV3_1G032570 vs. ExPASy Swiss-Prot
Match: O64703 (Agamous-like MADS-box protein AGL29 OS=Arabidopsis thaliana OX=3702 GN=AGL29 PE=2 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 2.4e-26
Identity = 75/173 (43.35%), Postives = 117/173 (67.63%), Query Frame = 0


Query: 1   MGRRKIEMKMVKDRGSRQVTFSKRRNGLFKKATDLATLCGLEIAIVVFSPGGKAFSFGNP 60
           MGRRKI+M+MV+D  +RQVTFSKRR GLFKKA++LATLC  E+ IVVFSPGGK FS+G P
Sbjct: 1   MGRRKIKMEMVQDMNTRQVTFSKRRTGLFKKASELATLCNAELGIVVFSPGGKPFSYGKP 60

Query: 61  NVEEVVDRYLGCEWKANGNPGVRERGMLE---KENEELLDLVKQ-LQMEKKKGEIMEKEM 120
           N++ V +R++  E+  + +    + G      K   E LDL+ Q ++ EK++GE  ++++
Sbjct: 61  NLDSVAERFMR-EYDDSDSGDEEKSGNYRPKLKRLSERLDLLNQEVEAEKERGEKSQEKL 120

Query: 121 KSRGE---LMKIEDMDLNELLKLKESLEKLRKNVKIEESELEASSSLLLLANE 167
           +S G+      IE + L+EL + K+ L+ +   ++ + + L+ASS L+LL+ +
Sbjct: 121 ESAGDERFKESIETLTLDELNEYKDRLQTVHGRIEGQVNHLQASSCLMLLSRK 172

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BLAST of CsaV3_1G032570 vs. ExPASy Swiss-Prot
Match: Q9FKK2 (Agamous-like MADS-box protein AGL62 OS=Arabidopsis thaliana OX=3702 GN=AGL62 PE=1 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 1.1e-23
Identity = 72/168 (42.86%), Postives = 105/168 (62.50%), Query Frame = 0


Query: 2   GRRKIEMKMVKDRGSRQVTFSKRRNGLFKKATDLATLCGLEIAIVVFSPGGKAFSFGNPN 61
           GR+KIEM  +K+  + QVTFSKRR+GLFKKA++L TLCG E+AIVVFSPG K FSFG+PN
Sbjct: 7   GRQKIEMVKMKNESNLQVTFSKRRSGLFKKASELCTLCGAEVAIVVFSPGRKVFSFGHPN 66

Query: 62  VEEVVDRYLGCEWKANGNP------------GVRERGMLEKENEELLDLVKQLQMEKKKG 121
           V+ V+DR++      N NP              R   +++  N  L  ++ QL+ EKKK 
Sbjct: 67  VDSVIDRFI------NNNPLPPHQHNNMQLRETRRNSIVQDLNNHLTQVLSQLETEKKKY 126

Query: 122 EIMEK---EMKSRGELMK--IEDMDLNELLKLKESLEKLRKNVKIEES 153
           + ++K   + K+ G   +  +E++ L++L   K +LE L+K V +E S
Sbjct: 127 DELKKIREKTKALGNWWEDPVEELALSQLEGFKGNLENLKKVVTVEAS 168

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BLAST of CsaV3_1G032570 vs. ExPASy Swiss-Prot
Match: Q4PSU4 (Agamous-like MADS-box protein AGL61 OS=Arabidopsis thaliana OX=3702 GN=AGL61 PE=1 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 2.7e-22
Identity = 69/161 (42.86%), Postives = 101/161 (62.73%), Query Frame = 0


Query: 1   MGRRKIEMKMVKDRGSRQVTFSKRRNGLFKKATDLATLCGLEIAIVVFSPGGKAFSFGNP 60
           +GR+KI M  +K    RQVTFSKRR GLFKKA++L TLCG EI I+VFSP  K FSFG+P
Sbjct: 62  IGRQKIPMVKIKKESHRQVTFSKRRAGLFKKASELCTLCGAEIGIIVFSPAKKPFSFGHP 121

Query: 61  NVEEVVDRYLGCEWKANGNPGVRERGMLE-------KENEELLDLVKQLQMEKKKGEIME 120
           +VE V+DRY+     +  N  + +   L+       + N +L  ++ +++ EKKKG+ ME
Sbjct: 122 SVESVLDRYV-----SRNNMSLAQSQQLQGSPAASCELNMQLTHILSEVEEEKKKGQAME 181

Query: 121 ---KEMKSRGEL----MKIEDMDLNELLKLKESLEKLRKNV 148
              KE   R  +      +E+M++ +L ++K +LE+LRK V
Sbjct: 182 EMRKESVRRSMINWWEKPVEEMNMVQLQEMKYALEELRKTV 217

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BLAST of CsaV3_1G032570 vs. ExPASy Swiss-Prot
Match: Q9LMM8 (Agamous-like MADS-box protein AGL28 OS=Arabidopsis thaliana OX=3702 GN=AGL28 PE=2 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 6.9e-18
Identity = 64/161 (39.75%), Postives = 97/161 (60.25%), Query Frame = 0


Query: 1   MGRRKIEMKMVKDRGSRQVTFSKRRNGLFKKATDLATLCGLEIAIVVFSPGGKAFSFGNP 60
           +GRRKIE+  + +  + QVTFSKRR+GLFKK ++L TLC  EIAI+VFSP GKA+SFG+P
Sbjct: 6   LGRRKIELVKMTNESNLQVTFSKRRSGLFKKGSELCTLCDAEIAIIVFSPSGKAYSFGHP 65

Query: 61  NVEEVVDRYLGCEWKANGNPGVRERGMLEKE--NEELLDLV--KQLQMEKKKGEIM-EKE 120
           NV +++D  LG   + N       R  L  +  NE L +++  K+ + E K+  +  E+E
Sbjct: 66  NVNKLLDHSLGRVIRHNNTNFAESRTKLRIQMLNESLTEVMAEKEKEQETKQSIVQNERE 125

Query: 121 MKSRGELMKIEDMDLN--ELLKLKESLEKLRKNVKIEESEL 155
            K   +  +    +LN  +   +K  LE L+K V  + ++L
Sbjct: 126 NKDAEKWWRNSPTELNLAQSTSMKCDLEALKKEVDEKVAQL 166

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BLAST of CsaV3_1G032570 vs. ExPASy Swiss-Prot
Match: O80807 (Agamous-like MADS-box protein AGL23 OS=Arabidopsis thaliana OX=3702 GN=AGL23 PE=2 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 1.1e-15
Identity = 53/137 (38.69%), Postives = 80/137 (58.39%), Query Frame = 0


Query: 1   MGRRKIEMKMVKDRGSRQVTFSKRRNGLFKKATDLATLCGLEIAIVVFSPGGKAFSFGNP 60
           +GRRK+E+  +    + QVTFSKR+ GLFKKA++  TLC  +IA++VFSP GK FSFG+P
Sbjct: 6   LGRRKVEIVKMTKESNLQVTFSKRKAGLFKKASEFCTLCDAKIAMIVFSPAGKVFSFGHP 65

Query: 61  NVEEVVDRYLGCEWKANGNPGVRER------GMLEKENEELLDLVKQLQMEKKKGEIMEK 120
           NV+ ++D + GC    + N  + E        ML K   E+   V++ Q  K+     E+
Sbjct: 66  NVDVLLDHFRGCV-VGHNNTNLDESYTKLHVQMLNKSYTEVKAEVEKEQKNKQSRAQNER 125

Query: 121 EMKSRGELMKIEDMDLN 132
           E ++  E      ++LN
Sbjct: 126 ENENAEEWWSKSPLELN 141

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BLAST of CsaV3_1G032570 vs. ExPASy TrEMBL
Match: A0A5A7UFJ7 (Agamous-like MADS-box protein AGL29 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold480G00320 PE=4 SV=1)

HSP 1 Score: 308.5 bits (789), Expect = 1.7e-80
Identity = 164/173 (94.80%), Postives = 166/173 (95.95%), Query Frame = 0


Query: 1   MGRRKIEMKMVKDRGSRQVTFSKRRNGLFKKATDLATLCGLEIAIVVFSPGGKAFSFGNP 60
           MGRRKIEMKMVKDRGSRQVTFSKRRNGLFKKATDLATLCGLEIAIVVFSPGGKAFSFGNP
Sbjct: 1   MGRRKIEMKMVKDRGSRQVTFSKRRNGLFKKATDLATLCGLEIAIVVFSPGGKAFSFGNP 60

Query: 61  NVEEVVDRYLGCEWKANGNPGVRERGMLEKENEELLDLVKQLQMEKKKGEIMEKEMKSRG 120
           NVEEVVDRYL CEWK N N  VRERGMLEKENEELLDLVKQLQMEKKKGE+MEKEMKSRG
Sbjct: 61  NVEEVVDRYLSCEWKVNRNTAVRERGMLEKENEELLDLVKQLQMEKKKGEVMEKEMKSRG 120

Query: 121 ELMKIEDMDLNELLKLKESLEKLRKNVKIEESELEASSSLLLLANEKPVPGDG 174
           ELMKIED+DLNELLKLKESLEKLRKNVKIEESELEAS SLLLLANEKPV GDG
Sbjct: 121 ELMKIEDLDLNELLKLKESLEKLRKNVKIEESELEASFSLLLLANEKPVRGDG 173

[Close]

BLAST of CsaV3_1G032570 vs. ExPASy TrEMBL
Match: A0A1S3B9N7 (agamous-like MADS-box protein AGL29 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103487550 PE=4 SV=1)

HSP 1 Score: 308.5 bits (789), Expect = 1.7e-80
Identity = 164/173 (94.80%), Postives = 166/173 (95.95%), Query Frame = 0


Query: 1   MGRRKIEMKMVKDRGSRQVTFSKRRNGLFKKATDLATLCGLEIAIVVFSPGGKAFSFGNP 60
           MGRRKIEMKMVKDRGSRQVTFSKRRNGLFKKATDLATLCGLEIAIVVFSPGGKAFSFGNP
Sbjct: 1   MGRRKIEMKMVKDRGSRQVTFSKRRNGLFKKATDLATLCGLEIAIVVFSPGGKAFSFGNP 60

Query: 61  NVEEVVDRYLGCEWKANGNPGVRERGMLEKENEELLDLVKQLQMEKKKGEIMEKEMKSRG 120
           NVEEVVDRYL CEWK N N  VRERGMLEKENEELLDLVKQLQMEKKKGE+MEKEMKSRG
Sbjct: 61  NVEEVVDRYLSCEWKVNRNTAVRERGMLEKENEELLDLVKQLQMEKKKGEVMEKEMKSRG 120

Query: 121 ELMKIEDMDLNELLKLKESLEKLRKNVKIEESELEASSSLLLLANEKPVPGDG 174
           ELMKIED+DLNELLKLKESLEKLRKNVKIEESELEAS SLLLLANEKPV GDG
Sbjct: 121 ELMKIEDLDLNELLKLKESLEKLRKNVKIEESELEASFSLLLLANEKPVRGDG 173

[Close]

BLAST of CsaV3_1G032570 vs. ExPASy TrEMBL
Match: A0A1S4E6V9 (agamous-like MADS-box protein AGL29 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103487550 PE=4 SV=1)

HSP 1 Score: 272.7 bits (696), Expect = 1.1e-69
Identity = 144/153 (94.12%), Postives = 146/153 (95.42%), Query Frame = 0


Query: 21  FSKRRNGLFKKATDLATLCGLEIAIVVFSPGGKAFSFGNPNVEEVVDRYLGCEWKANGNP 80
           FSKRRNGLFKKATDLATLCGLEIAIVVFSPGGKAFSFGNPNVEEVVDRYL CEWK N N 
Sbjct: 8   FSKRRNGLFKKATDLATLCGLEIAIVVFSPGGKAFSFGNPNVEEVVDRYLSCEWKVNRNT 67

Query: 81  GVRERGMLEKENEELLDLVKQLQMEKKKGEIMEKEMKSRGELMKIEDMDLNELLKLKESL 140
            VRERGMLEKENEELLDLVKQLQMEKKKGE+MEKEMKSRGELMKIED+DLNELLKLKESL
Sbjct: 68  AVRERGMLEKENEELLDLVKQLQMEKKKGEVMEKEMKSRGELMKIEDLDLNELLKLKESL 127

Query: 141 EKLRKNVKIEESELEASSSLLLLANEKPVPGDG 174
           EKLRKNVKIEESELEAS SLLLLANEKPV GDG
Sbjct: 128 EKLRKNVKIEESELEASFSLLLLANEKPVRGDG 160

[Close]

BLAST of CsaV3_1G032570 vs. ExPASy TrEMBL
Match: A0A6J1KIQ5 (agamous-like MADS-box protein AGL29 OS=Cucurbita maxima OX=3661 GN=LOC111495601 PE=4 SV=1)

HSP 1 Score: 253.4 bits (646), Expect = 6.6e-64
Identity = 141/172 (81.98%), Postives = 154/172 (89.53%), Query Frame = 0


Query: 1   MGRRKIEMKMVKDRGSRQVTFSKRRNGLFKKATDLATLCGLEIAIVVFSPGGKAFSFGNP 60
           MGRRKIEMKMVKDRGSRQVTFSKRRNGLFKKA DLATLCGLEIAI+VFSPGGKAFSFGNP
Sbjct: 1   MGRRKIEMKMVKDRGSRQVTFSKRRNGLFKKANDLATLCGLEIAIIVFSPGGKAFSFGNP 60

Query: 61  NVEEVVDRYLGCEWKANGNPGVRERGMLEKENEELLDLVKQLQMEKKKGEIMEKEMKSRG 120
           NVEEVVDRYL    K+   P   E GM EKENEEL+DLVKQLQ+EKKKGE++EKEMKSRG
Sbjct: 61  NVEEVVDRYL--NRKSEPIPPASE-GMFEKENEELIDLVKQLQLEKKKGEMLEKEMKSRG 120

Query: 121 ELMKIEDMDLNELLKLKESLEKLRKNVKIEESELEASSSLLLLANEKPVPGD 173
           E +KIED+DL+ELLKLKESLE+LRKNV+++ESELEASSSLLLLANE  V  D
Sbjct: 121 ESIKIEDLDLDELLKLKESLERLRKNVRMKESELEASSSLLLLANEPVVEAD 169

[Close]

BLAST of CsaV3_1G032570 vs. ExPASy TrEMBL
Match: A0A6J1EGN3 (agamous-like MADS-box protein AGL29 OS=Cucurbita moschata OX=3662 GN=LOC111434156 PE=4 SV=1)

HSP 1 Score: 250.0 bits (637), Expect = 7.3e-63
Identity = 139/172 (80.81%), Postives = 153/172 (88.95%), Query Frame = 0


Query: 1   MGRRKIEMKMVKDRGSRQVTFSKRRNGLFKKATDLATLCGLEIAIVVFSPGGKAFSFGNP 60
           MGRRKIEMKMVKDRGSRQVTFSKRRNGLFKKA DLATLCGLEIAI+VFSPGGKAFSFGNP
Sbjct: 1   MGRRKIEMKMVKDRGSRQVTFSKRRNGLFKKANDLATLCGLEIAIIVFSPGGKAFSFGNP 60

Query: 61  NVEEVVDRYLGCEWKANGNPGVRERGMLEKENEELLDLVKQLQMEKKKGEIMEKEMKSRG 120
           NVE+VVDRYL    K+   P   E GM EKENEEL+DLVKQLQ+EKKKGE++EKEMKSRG
Sbjct: 61  NVEDVVDRYL--NRKSEPIPPASE-GMFEKENEELIDLVKQLQLEKKKGEMLEKEMKSRG 120

Query: 121 ELMKIEDMDLNELLKLKESLEKLRKNVKIEESELEASSSLLLLANEKPVPGD 173
           E +KIED+DL+ELLKLKESLE+LR+NV ++ESELEASSSLLLLANE  V  D
Sbjct: 121 ESIKIEDLDLDELLKLKESLERLRQNVSMKESELEASSSLLLLANEPVVEAD 169

[Close]

BLAST of CsaV3_1G032570 vs. TAIR 10
Match: AT2G34440.1 (AGAMOUS-like 29 )

HSP 1 Score: 120.2 bits (300), Expect = 1.7e-27
Identity = 75/173 (43.35%), Postives = 117/173 (67.63%), Query Frame = 0


Query: 1   MGRRKIEMKMVKDRGSRQVTFSKRRNGLFKKATDLATLCGLEIAIVVFSPGGKAFSFGNP 60
           MGRRKI+M+MV+D  +RQVTFSKRR GLFKKA++LATLC  E+ IVVFSPGGK FS+G P
Sbjct: 1   MGRRKIKMEMVQDMNTRQVTFSKRRTGLFKKASELATLCNAELGIVVFSPGGKPFSYGKP 60

Query: 61  NVEEVVDRYLGCEWKANGNPGVRERGMLE---KENEELLDLVKQ-LQMEKKKGEIMEKEM 120
           N++ V +R++  E+  + +    + G      K   E LDL+ Q ++ EK++GE  ++++
Sbjct: 61  NLDSVAERFMR-EYDDSDSGDEEKSGNYRPKLKRLSERLDLLNQEVEAEKERGEKSQEKL 120

Query: 121 KSRGE---LMKIEDMDLNELLKLKESLEKLRKNVKIEESELEASSSLLLLANE 167
           +S G+      IE + L+EL + K+ L+ +   ++ + + L+ASS L+LL+ +
Sbjct: 121 ESAGDERFKESIETLTLDELNEYKDRLQTVHGRIEGQVNHLQASSCLMLLSRK 172

[Close]

BLAST of CsaV3_1G032570 vs. TAIR 10
Match: AT5G60440.1 (AGAMOUS-like 62 )

HSP 1 Score: 111.3 bits (277), Expect = 7.8e-25
Identity = 72/168 (42.86%), Postives = 105/168 (62.50%), Query Frame = 0


Query: 2   GRRKIEMKMVKDRGSRQVTFSKRRNGLFKKATDLATLCGLEIAIVVFSPGGKAFSFGNPN 61
           GR+KIEM  +K+  + QVTFSKRR+GLFKKA++L TLCG E+AIVVFSPG K FSFG+PN
Sbjct: 7   GRQKIEMVKMKNESNLQVTFSKRRSGLFKKASELCTLCGAEVAIVVFSPGRKVFSFGHPN 66

Query: 62  VEEVVDRYLGCEWKANGNP------------GVRERGMLEKENEELLDLVKQLQMEKKKG 121
           V+ V+DR++      N NP              R   +++  N  L  ++ QL+ EKKK 
Sbjct: 67  VDSVIDRFI------NNNPLPPHQHNNMQLRETRRNSIVQDLNNHLTQVLSQLETEKKKY 126

Query: 122 EIMEK---EMKSRGELMK--IEDMDLNELLKLKESLEKLRKNVKIEES 153
           + ++K   + K+ G   +  +E++ L++L   K +LE L+K V +E S
Sbjct: 127 DELKKIREKTKALGNWWEDPVEELALSQLEGFKGNLENLKKVVTVEAS 168

[Close]

BLAST of CsaV3_1G032570 vs. TAIR 10
Match: AT3G66656.1 (AGAMOUS-like 91 )

HSP 1 Score: 110.5 bits (275), Expect = 1.3e-24
Identity = 70/181 (38.67%), Postives = 111/181 (61.33%), Query Frame = 0


Query: 1   MGRRKIEMKMVKDRGSRQVTFSKRRNGLFKKATDLATLCGLEIAIVVFSPGGKAFSFGNP 60
           MGRRKI+M+ V+D  ++QVTFSKRR GLFKKA++LATLC  E+ IVVFSPG K +SFG P
Sbjct: 1   MGRRKIKMEKVQDTNTKQVTFSKRRLGLFKKASELATLCNAEVGIVVFSPGNKPYSFGKP 60

Query: 61  NVEEVVDRYL----------GCEWK--ANGNPGVRERGMLEKENEELLDLVKQLQMEKKK 120
           N + + +R+            CE    + GN   +E+ + ++ N     + ++ + EKK 
Sbjct: 61  NFDVIAERFKNEFEEEEEGDSCETSGYSRGNRARQEKKICKRLN----SITEEAEAEKKH 120

Query: 121 GEIMEKEMKSRGE---LMKIEDMDLNELLKLKESLEKLRKNVKIEESELEASSSLLLLAN 167
           GE + K ++S  +      IE++ L EL + +  ++K+   ++   S ++ASSSL+ L+N
Sbjct: 121 GEDLHKWLESAEQDKFNKPIEELTLEELKEFEAKIKKISCGIQSNISHMQASSSLMFLSN 177

[Close]

BLAST of CsaV3_1G032570 vs. TAIR 10
Match: AT2G24840.1 (AGAMOUS-like 61 )

HSP 1 Score: 106.7 bits (265), Expect = 1.9e-23
Identity = 69/161 (42.86%), Postives = 101/161 (62.73%), Query Frame = 0


Query: 1   MGRRKIEMKMVKDRGSRQVTFSKRRNGLFKKATDLATLCGLEIAIVVFSPGGKAFSFGNP 60
           +GR+KI M  +K    RQVTFSKRR GLFKKA++L TLCG EI I+VFSP  K FSFG+P
Sbjct: 62  IGRQKIPMVKIKKESHRQVTFSKRRAGLFKKASELCTLCGAEIGIIVFSPAKKPFSFGHP 121

Query: 61  NVEEVVDRYLGCEWKANGNPGVRERGMLE-------KENEELLDLVKQLQMEKKKGEIME 120
           +VE V+DRY+     +  N  + +   L+       + N +L  ++ +++ EKKKG+ ME
Sbjct: 122 SVESVLDRYV-----SRNNMSLAQSQQLQGSPAASCELNMQLTHILSEVEEEKKKGQAME 181

Query: 121 ---KEMKSRGEL----MKIEDMDLNELLKLKESLEKLRKNV 148
              KE   R  +      +E+M++ +L ++K +LE+LRK V
Sbjct: 182 EMRKESVRRSMINWWEKPVEEMNMVQLQEMKYALEELRKTV 217

[Close]

BLAST of CsaV3_1G032570 vs. TAIR 10
Match: AT1G01530.1 (AGAMOUS-like 28 )

HSP 1 Score: 92.0 bits (227), Expect = 4.9e-19
Identity = 64/161 (39.75%), Postives = 97/161 (60.25%), Query Frame = 0


Query: 1   MGRRKIEMKMVKDRGSRQVTFSKRRNGLFKKATDLATLCGLEIAIVVFSPGGKAFSFGNP 60
           +GRRKIE+  + +  + QVTFSKRR+GLFKK ++L TLC  EIAI+VFSP GKA+SFG+P
Sbjct: 6   LGRRKIELVKMTNESNLQVTFSKRRSGLFKKGSELCTLCDAEIAIIVFSPSGKAYSFGHP 65

Query: 61  NVEEVVDRYLGCEWKANGNPGVRERGMLEKE--NEELLDLV--KQLQMEKKKGEIM-EKE 120
           NV +++D  LG   + N       R  L  +  NE L +++  K+ + E K+  +  E+E
Sbjct: 66  NVNKLLDHSLGRVIRHNNTNFAESRTKLRIQMLNESLTEVMAEKEKEQETKQSIVQNERE 125

Query: 121 MKSRGELMKIEDMDLN--ELLKLKESLEKLRKNVKIEESEL 155
            K   +  +    +LN  +   +K  LE L+K V  + ++L
Sbjct: 126 NKDAEKWWRNSPTELNLAQSTSMKCDLEALKKEVDEKVAQL 166

The following BLAST results are available for this feature:

BLAST of CsaV3_1G032570 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004147415.1	4.4e-86	100.00	agamous-like MADS-box protein AGL29 [Cucumis sativus] >KAE8653190.1 hypothetical...	[more]
XP_008444113.1	3.6e-80	94.80	PREDICTED: agamous-like MADS-box protein AGL29 isoform X1 [Cucumis melo] >KAA005...	[more]
XP_016903730.1	2.2e-69	94.12	PREDICTED: agamous-like MADS-box protein AGL29 isoform X2 [Cucumis melo]	[more]
XP_038893813.1	2.3e-66	83.14	agamous-like MADS-box protein AGL29 [Benincasa hispida]	[more]
XP_023001476.1	1.4e-63	81.98	agamous-like MADS-box protein AGL29 [Cucurbita maxima]	[more]

BLAST of CsaV3_1G032570 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O64703	2.4e-26	43.35	Agamous-like MADS-box protein AGL29 OS=Arabidopsis thaliana OX=3702 GN=AGL29 PE=...	[more]
Q9FKK2	1.1e-23	42.86	Agamous-like MADS-box protein AGL62 OS=Arabidopsis thaliana OX=3702 GN=AGL62 PE=...	[more]
Q4PSU4	2.7e-22	42.86	Agamous-like MADS-box protein AGL61 OS=Arabidopsis thaliana OX=3702 GN=AGL61 PE=...	[more]
Q9LMM8	6.9e-18	39.75	Agamous-like MADS-box protein AGL28 OS=Arabidopsis thaliana OX=3702 GN=AGL28 PE=...	[more]
O80807	1.1e-15	38.69	Agamous-like MADS-box protein AGL23 OS=Arabidopsis thaliana OX=3702 GN=AGL23 PE=...	[more]

BLAST of CsaV3_1G032570 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UFJ7	1.7e-80	94.80	Agamous-like MADS-box protein AGL29 isoform X1 OS=Cucumis melo var. makuwa OX=11...	[more]
A0A1S3B9N7	1.7e-80	94.80	agamous-like MADS-box protein AGL29 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103...	[more]
A0A1S4E6V9	1.1e-69	94.12	agamous-like MADS-box protein AGL29 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103...	[more]
A0A6J1KIQ5	6.6e-64	81.98	agamous-like MADS-box protein AGL29 OS=Cucurbita maxima OX=3661 GN=LOC111495601 ...	[more]
A0A6J1EGN3	7.3e-63	80.81	agamous-like MADS-box protein AGL29 OS=Cucurbita moschata OX=3662 GN=LOC11143415...	[more]

BLAST of CsaV3_1G032570 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G34440.1	1.7e-27	43.35	AGAMOUS-like 29	[more]
AT5G60440.1	7.8e-25	42.86	AGAMOUS-like 62	[more]
AT3G66656.1	1.3e-24	38.67	AGAMOUS-like 91	[more]
AT2G24840.1	1.9e-23	42.86	AGAMOUS-like 61	[more]
AT1G01530.1	4.9e-19	39.75	AGAMOUS-like 28	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 85..108
None	No IPR available	COILS	Coil	Coil	coord: 130..160
None	No IPR available	PANTHER	PTHR11945	MADS BOX PROTEIN	coord: 2..167
None	No IPR available	PANTHER	PTHR11945:SF229	AGAMOUS-LIKE MADS-BOX PROTEIN AGL29	coord: 2..167
IPR002100	Transcription factor, MADS-box	PRINTS	PR00404	MADSDOMAIN	coord: 3..23 score: 48.83 coord: 23..38 score: 63.89 coord: 38..59 score: 38.96
IPR002100	Transcription factor, MADS-box	SMART	SM00432	madsneu2	coord: 1..60 e-value: 2.6E-31 score: 120.0
IPR002100	Transcription factor, MADS-box	PFAM	PF00319	SRF-TF	coord: 12..57 e-value: 1.8E-22 score: 78.6
IPR002100	Transcription factor, MADS-box	PROSITE	PS50066	MADS_BOX_2	coord: 1..61 score: 26.057756
IPR036879	Transcription factor, MADS-box superfamily	GENE3D	3.40.1810.10		coord: 14..78 e-value: 7.4E-26 score: 91.8
IPR036879	Transcription factor, MADS-box superfamily	SUPERFAMILY	55455	SRF-like	coord: 1..73
IPR033896	MADS MEF2-like	CDD	cd00265	MADS_MEF2_like	coord: 2..73 e-value: 2.25682E-32 score: 108.794

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_1G032570.1	CsaV3_1G032570.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045944	positive regulation of transcription by RNA polymerase II
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046983	protein dimerization activity
molecular_function	GO:0000977	RNA polymerase II transcription regulatory region sequence-specific DNA binding