CsaV3_1G032260 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_1G032260
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Polyprotein
Location	chr1: 19213044 .. 19213477 (-)
RNA-Seq Expression	CsaV3_1G032260
Synteny	CsaV3_1G032260

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTCTTAAACTTCTCTCCAAGCTTTCTCTGCACACTCCCACGATCATAGATACAACTGTATCTTCAAACTCAAGATCAAAGTATGATCTTTCAAAGGCTATCGCCAAACAAACCAAAGCTGAATCACAACTTGCTCAAATAGAAAATAGACTTAAAAATTGGTCTATTCCAAAGCTTGAAGCAAAAGAGGTATATAGAATCAATACCTTCAACTTTTCCCAGCAAGATATGATAGTTATCACTGAGGAAAACGTGGCGATGAAAGACGAATTCACCACGGTCAAACTCTTGCCTGAAGAAACGCTCTTCAGAAGCAGAGAAAAATTCAAATACCTCCATATCGAATGCGTGCAAGTTGCCTTAAAACCACTCTTCAGAGAAGGTCTAGACGTTTCAGTCTATCTTGCCTTAAGAGATAAAAGGCATCGAAG

mRNA sequence

ATGATTCTTAAACTTCTCTCCAAGCTTTCTCTGCACACTCCCACGATCATAGATACAACTGTATCTTCAAACTCAAGATCAAAGTATGATCTTTCAAAGGCTATCGCCAAACAAACCAAAGCTGAATCACAACTTGCTCAAATAGAAAATAGACTTAAAAATTGGTCTATTCCAAAGCTTGAAGCAAAAGAGGTATATAGAATCAATACCTTCAACTTTTCCCAGCAAGATATGATAGTTATCACTGAGGAAAACGTGGCGATGAAAGACGAATTCACCACGGTCAAACTCTTGCCTGAAGAAACGCTCTTCAGAAGCAGAGAAAAATTCAAATACCTCCATATCGAATGCGTGCAAGTTGCCTTAAAACCACTCTTCAGAGAAGGTCTAGACGTTTCAGTCTATCTTGCCTTAAGAGATAAAAGGCATCGAAG

Coding sequence (CDS)

ATGATTCTTAAACTTCTCTCCAAGCTTTCTCTGCACACTCCCACGATCATAGATACAACTGTATCTTCAAACTCAAGATCAAAGTATGATCTTTCAAAGGCTATCGCCAAACAAACCAAAGCTGAATCACAACTTGCTCAAATAGAAAATAGACTTAAAAATTGGTCTATTCCAAAGCTTGAAGCAAAAGAGGTATATAGAATCAATACCTTCAACTTTTCCCAGCAAGATATGATAGTTATCACTGAGGAAAACGTGGCGATGAAAGACGAATTCACCACGGTCAAACTCTTGCCTGAAGAAACGCTCTTCAGAAGCAGAGAAAAATTCAAATACCTCCATATCGAATGCGTGCAAGTTGCCTTAAAACCACTCTTCAGAGAAGGTCTAGACGTTTCAGTCTATCTTGCCTTAAGAGATAAAAGGCATCGAAG

Protein sequence

MILKLLSKLSLHTPTIIDTTVSSNSRSKYDLSKAIAKQTKAESQLAQIENRLKNWSIPKLEAKEVYRINTFNFSQQDMIVITEENVAMKDEFTTVKLLPEETLFRSREKFKYLHIECVQVALKPLFREGLDVSVYLALRDKRHRX

Homology

[Close]

BLAST of CsaV3_1G032260 vs. NCBI nr
Match: KAE8653180.1 (hypothetical protein Csa_019682, partial [Cucumis sativus])

HSP 1 Score: 273.1 bits (697), Expect = 1.4e-69
Identity = 144/144 (100.00%), Postives = 144/144 (100.00%), Query Frame = 0


Query: 1   MILKLLSKLSLHTPTIIDTTVSSNSRSKYDLSKAIAKQTKAESQLAQIENRLKNWSIPKL 60
           MILKLLSKLSLHTPTIIDTTVSSNSRSKYDLSKAIAKQTKAESQLAQIENRLKNWSIPKL
Sbjct: 1   MILKLLSKLSLHTPTIIDTTVSSNSRSKYDLSKAIAKQTKAESQLAQIENRLKNWSIPKL 60

Query: 61  EAKEVYRINTFNFSQQDMIVITEENVAMKDEFTTVKLLPEETLFRSREKFKYLHIECVQV 120
           EAKEVYRINTFNFSQQDMIVITEENVAMKDEFTTVKLLPEETLFRSREKFKYLHIECVQV
Sbjct: 61  EAKEVYRINTFNFSQQDMIVITEENVAMKDEFTTVKLLPEETLFRSREKFKYLHIECVQV 120

Query: 121 ALKPLFREGLDVSVYLALRDKRHR 145
           ALKPLFREGLDVSVYLALRDKRHR
Sbjct: 121 ALKPLFREGLDVSVYLALRDKRHR 144

[Close]

BLAST of CsaV3_1G032260 vs. NCBI nr
Match: TYJ98087.1 (Enzymatic polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 216.1 bits (549), Expect = 2.0e-52
Identity = 115/150 (76.67%), Postives = 128/150 (85.33%), Query Frame = 0


Query: 1   MILKLLSKLSLHTPTIIDTT-------VSSNSRSKYDLSKAIAKQTKAESQLAQIENRLK 60
           M+ KLLSKLS H+PTIID T       +SSNSRS+ DLS A+AK   AE+ LAQ+ENRLK
Sbjct: 1   MLSKLLSKLSPHSPTIIDATASSSYSSLSSNSRSQDDLSTALAKHNTAEAHLAQVENRLK 60

Query: 61  NWSIPKLEAKEVYRINTFNFSQQDMIVITEENVAMKDEFTTVKLLPEETLFRSREKFKYL 120
           NWSIPKLEA +VY+INTFNFSQQD+IVITEENVAMKDEFT +KLLPEETL + RE+FKYL
Sbjct: 61  NWSIPKLEASQVYKINTFNFSQQDIIVITEENVAMKDEFTAIKLLPEETLLKVRERFKYL 120

Query: 121 HIECVQVALKPLFREGLDVSVYLALRDKRH 144
           HI CVQVALKPLFREGLDV VYLALRDKRH
Sbjct: 121 HIGCVQVALKPLFREGLDVPVYLALRDKRH 150

[Close]

BLAST of CsaV3_1G032260 vs. NCBI nr
Match: KAA0052109.1 (Enzymatic polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 216.1 bits (549), Expect = 2.0e-52
Identity = 115/150 (76.67%), Postives = 128/150 (85.33%), Query Frame = 0


Query: 1   MILKLLSKLSLHTPTIIDTT-------VSSNSRSKYDLSKAIAKQTKAESQLAQIENRLK 60
           M+ KLLSKLS H+PTIID T       +SSNSRS+ DLS A+AK   AE+ LAQ+ENRLK
Sbjct: 1   MLSKLLSKLSPHSPTIIDATASSSYSSLSSNSRSQDDLSTALAKHNTAEAHLAQVENRLK 60

Query: 61  NWSIPKLEAKEVYRINTFNFSQQDMIVITEENVAMKDEFTTVKLLPEETLFRSREKFKYL 120
           NWSIPKLEA +VY+INTFNFSQQD+IVITEENVAMKDEFT +KLLPEETL + RE+FKYL
Sbjct: 61  NWSIPKLEASQVYKINTFNFSQQDIIVITEENVAMKDEFTAIKLLPEETLLKVRERFKYL 120

Query: 121 HIECVQVALKPLFREGLDVSVYLALRDKRH 144
           HI CVQVALKPLFREGLDV VYLALRDKRH
Sbjct: 121 HIGCVQVALKPLFREGLDVPVYLALRDKRH 150

[Close]

BLAST of CsaV3_1G032260 vs. NCBI nr
Match: TYK28080.1 (movement protein [Cucumis melo var. makuwa])

HSP 1 Score: 214.5 bits (545), Expect = 5.9e-52
Identity = 114/150 (76.00%), Postives = 128/150 (85.33%), Query Frame = 0


Query: 1   MILKLLSKLSLHTPTIIDTT-------VSSNSRSKYDLSKAIAKQTKAESQLAQIENRLK 60
           M+ +LLSKLS H+PTIID T       +SSNSRS+ DLS A+AK   AE+ LAQ+ENRLK
Sbjct: 1   MLSELLSKLSPHSPTIIDATASSSYSFLSSNSRSQDDLSTALAKHNTAEAHLAQVENRLK 60

Query: 61  NWSIPKLEAKEVYRINTFNFSQQDMIVITEENVAMKDEFTTVKLLPEETLFRSREKFKYL 120
           NWSIPKLEA +VYRINTFNFSQQD+I+ITEENVAMKDEFT +KLLPEETL + RE+FKYL
Sbjct: 61  NWSIPKLEASQVYRINTFNFSQQDVILITEENVAMKDEFTAIKLLPEETLLKVRERFKYL 120

Query: 121 HIECVQVALKPLFREGLDVSVYLALRDKRH 144
           HI CVQVALKPLFREGLDV VYLALRDKRH
Sbjct: 121 HIGCVQVALKPLFREGLDVPVYLALRDKRH 150

[Close]

BLAST of CsaV3_1G032260 vs. NCBI nr
Match: KAA0032920.1 (movement protein [Cucumis melo var. makuwa])

HSP 1 Score: 214.5 bits (545), Expect = 5.9e-52
Identity = 114/150 (76.00%), Postives = 128/150 (85.33%), Query Frame = 0


Query: 1   MILKLLSKLSLHTPTIIDTT-------VSSNSRSKYDLSKAIAKQTKAESQLAQIENRLK 60
           M+ +LLSKLS H+PTIID T       +SSNSRS+ DLS A+AK   AE+ LAQ+ENRLK
Sbjct: 1   MLSELLSKLSPHSPTIIDATASSSYSFLSSNSRSQDDLSTALAKHNTAEAHLAQVENRLK 60

Query: 61  NWSIPKLEAKEVYRINTFNFSQQDMIVITEENVAMKDEFTTVKLLPEETLFRSREKFKYL 120
           NWSIPKLEA +VYRINTFNFSQQD+I+ITEENVAMKDEFT +KLLPEETL + RE+FKYL
Sbjct: 61  NWSIPKLEASQVYRINTFNFSQQDVILITEENVAMKDEFTAIKLLPEETLLKVRERFKYL 120

Query: 121 HIECVQVALKPLFREGLDVSVYLALRDKRH 144
           HI CVQVALKPLFREGLDV VYLALRDKRH
Sbjct: 121 HIGCVQVALKPLFREGLDVPVYLALRDKRH 150

[Close]

BLAST of CsaV3_1G032260 vs. ExPASy TrEMBL
Match: A0A0A0M024 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G434190 PE=4 SV=1)

HSP 1 Score: 273.1 bits (697), Expect = 6.7e-70
Identity = 144/144 (100.00%), Postives = 144/144 (100.00%), Query Frame = 0


Query: 1   MILKLLSKLSLHTPTIIDTTVSSNSRSKYDLSKAIAKQTKAESQLAQIENRLKNWSIPKL 60
           MILKLLSKLSLHTPTIIDTTVSSNSRSKYDLSKAIAKQTKAESQLAQIENRLKNWSIPKL
Sbjct: 1   MILKLLSKLSLHTPTIIDTTVSSNSRSKYDLSKAIAKQTKAESQLAQIENRLKNWSIPKL 60

Query: 61  EAKEVYRINTFNFSQQDMIVITEENVAMKDEFTTVKLLPEETLFRSREKFKYLHIECVQV 120
           EAKEVYRINTFNFSQQDMIVITEENVAMKDEFTTVKLLPEETLFRSREKFKYLHIECVQV
Sbjct: 61  EAKEVYRINTFNFSQQDMIVITEENVAMKDEFTTVKLLPEETLFRSREKFKYLHIECVQV 120

Query: 121 ALKPLFREGLDVSVYLALRDKRHR 145
           ALKPLFREGLDVSVYLALRDKRHR
Sbjct: 121 ALKPLFREGLDVSVYLALRDKRHR 144

[Close]

BLAST of CsaV3_1G032260 vs. ExPASy TrEMBL
Match: A0A5D3BG41 (Enzymatic polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold565G00200 PE=4 SV=1)

HSP 1 Score: 216.1 bits (549), Expect = 9.8e-53
Identity = 115/150 (76.67%), Postives = 128/150 (85.33%), Query Frame = 0


Query: 1   MILKLLSKLSLHTPTIIDTT-------VSSNSRSKYDLSKAIAKQTKAESQLAQIENRLK 60
           M+ KLLSKLS H+PTIID T       +SSNSRS+ DLS A+AK   AE+ LAQ+ENRLK
Sbjct: 1   MLSKLLSKLSPHSPTIIDATASSSYSSLSSNSRSQDDLSTALAKHNTAEAHLAQVENRLK 60

Query: 61  NWSIPKLEAKEVYRINTFNFSQQDMIVITEENVAMKDEFTTVKLLPEETLFRSREKFKYL 120
           NWSIPKLEA +VY+INTFNFSQQD+IVITEENVAMKDEFT +KLLPEETL + RE+FKYL
Sbjct: 61  NWSIPKLEASQVYKINTFNFSQQDIIVITEENVAMKDEFTAIKLLPEETLLKVRERFKYL 120

Query: 121 HIECVQVALKPLFREGLDVSVYLALRDKRH 144
           HI CVQVALKPLFREGLDV VYLALRDKRH
Sbjct: 121 HIGCVQVALKPLFREGLDVPVYLALRDKRH 150

[Close]

BLAST of CsaV3_1G032260 vs. ExPASy TrEMBL
Match: A0A5A7UF59 (Enzymatic polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold578G00970 PE=4 SV=1)

HSP 1 Score: 216.1 bits (549), Expect = 9.8e-53
Identity = 115/150 (76.67%), Postives = 128/150 (85.33%), Query Frame = 0


Query: 1   MILKLLSKLSLHTPTIIDTT-------VSSNSRSKYDLSKAIAKQTKAESQLAQIENRLK 60
           M+ KLLSKLS H+PTIID T       +SSNSRS+ DLS A+AK   AE+ LAQ+ENRLK
Sbjct: 1   MLSKLLSKLSPHSPTIIDATASSSYSSLSSNSRSQDDLSTALAKHNTAEAHLAQVENRLK 60

Query: 61  NWSIPKLEAKEVYRINTFNFSQQDMIVITEENVAMKDEFTTVKLLPEETLFRSREKFKYL 120
           NWSIPKLEA +VY+INTFNFSQQD+IVITEENVAMKDEFT +KLLPEETL + RE+FKYL
Sbjct: 61  NWSIPKLEASQVYKINTFNFSQQDIIVITEENVAMKDEFTAIKLLPEETLLKVRERFKYL 120

Query: 121 HIECVQVALKPLFREGLDVSVYLALRDKRH 144
           HI CVQVALKPLFREGLDV VYLALRDKRH
Sbjct: 121 HIGCVQVALKPLFREGLDVPVYLALRDKRH 150

[Close]

BLAST of CsaV3_1G032260 vs. ExPASy TrEMBL
Match: A0A5D3DXV6 (Movement protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G003440 PE=4 SV=1)

HSP 1 Score: 214.5 bits (545), Expect = 2.8e-52
Identity = 114/150 (76.00%), Postives = 128/150 (85.33%), Query Frame = 0


Query: 1   MILKLLSKLSLHTPTIIDTT-------VSSNSRSKYDLSKAIAKQTKAESQLAQIENRLK 60
           M+ +LLSKLS H+PTIID T       +SSNSRS+ DLS A+AK   AE+ LAQ+ENRLK
Sbjct: 1   MLSELLSKLSPHSPTIIDATASSSYSFLSSNSRSQDDLSTALAKHNTAEAHLAQVENRLK 60

Query: 61  NWSIPKLEAKEVYRINTFNFSQQDMIVITEENVAMKDEFTTVKLLPEETLFRSREKFKYL 120
           NWSIPKLEA +VYRINTFNFSQQD+I+ITEENVAMKDEFT +KLLPEETL + RE+FKYL
Sbjct: 61  NWSIPKLEASQVYRINTFNFSQQDVILITEENVAMKDEFTAIKLLPEETLLKVRERFKYL 120

Query: 121 HIECVQVALKPLFREGLDVSVYLALRDKRH 144
           HI CVQVALKPLFREGLDV VYLALRDKRH
Sbjct: 121 HIGCVQVALKPLFREGLDVPVYLALRDKRH 150

[Close]

BLAST of CsaV3_1G032260 vs. ExPASy TrEMBL
Match: A0A5A7SPT5 (Movement protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold81G001690 PE=4 SV=1)

HSP 1 Score: 214.5 bits (545), Expect = 2.8e-52
Identity = 114/150 (76.00%), Postives = 128/150 (85.33%), Query Frame = 0


Query: 1   MILKLLSKLSLHTPTIIDTT-------VSSNSRSKYDLSKAIAKQTKAESQLAQIENRLK 60
           M+ +LLSKLS H+PTIID T       +SSNSRS+ DLS A+AK   AE+ LAQ+ENRLK
Sbjct: 1   MLSELLSKLSPHSPTIIDATASSSYSFLSSNSRSQDDLSTALAKHNTAEAHLAQVENRLK 60

Query: 61  NWSIPKLEAKEVYRINTFNFSQQDMIVITEENVAMKDEFTTVKLLPEETLFRSREKFKYL 120
           NWSIPKLEA +VYRINTFNFSQQD+I+ITEENVAMKDEFT +KLLPEETL + RE+FKYL
Sbjct: 61  NWSIPKLEASQVYRINTFNFSQQDVILITEENVAMKDEFTAIKLLPEETLLKVRERFKYL 120

Query: 121 HIECVQVALKPLFREGLDVSVYLALRDKRH 144
           HI CVQVALKPLFREGLDV VYLALRDKRH
Sbjct: 121 HIGCVQVALKPLFREGLDVPVYLALRDKRH 150

The following BLAST results are available for this feature:

BLAST of CsaV3_1G032260 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8653180.1	1.4e-69	100.00	hypothetical protein Csa_019682, partial [Cucumis sativus]	[more]
TYJ98087.1	2.0e-52	76.67	Enzymatic polyprotein [Cucumis melo var. makuwa]	[more]
KAA0052109.1	2.0e-52	76.67	Enzymatic polyprotein [Cucumis melo var. makuwa]	[more]
TYK28080.1	5.9e-52	76.00	movement protein [Cucumis melo var. makuwa]	[more]
KAA0032920.1	5.9e-52	76.00	movement protein [Cucumis melo var. makuwa]	[more]

BLAST of CsaV3_1G032260 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_1G032260 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0M024	6.7e-70	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G434190 PE=4 SV=1	[more]
A0A5D3BG41	9.8e-53	76.67	Enzymatic polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold56...	[more]
A0A5A7UF59	9.8e-53	76.67	Enzymatic polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold57...	[more]
A0A5D3DXV6	2.8e-52	76.00	Movement protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G003...	[more]
A0A5A7SPT5	2.8e-52	76.00	Movement protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold81G0016...	[more]

BLAST of CsaV3_1G032260 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 31..51
IPR028919	Viral movement protein	PFAM	PF01107	MP	coord: 77..142 e-value: 1.2E-8 score: 34.7

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_1G032260.1	CsaV3_1G032260.1	mRNA