CsaV3_1G032100 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_1G032100
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionClavata3/ESR (CLE) gene family member
Locationchr1: 19099504 .. 19100195 (+)
RNA-Seq ExpressionCsaV3_1G032100
SyntenyCsaV3_1G032100
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ACTCTCCCTTTCTCTCCCTCTCTCATTTTCTCGATTCCTTTTGCCTTATAATTTTTAATTTTCATTCCCTCTTTAATTTCTTCCTTCACAGGTCACTTTTCAACTATAAATTCTCCATTCTCTTCTTCTTTTTTGTTTTGTTTTGTTTTGTTTTAAAACTATAAATCTCATATATCATCTTTTTTTATTTTGTGGGTCTTCACCCTTTCACATGATCATCATCATTTCCAAATCATCAATTTTTCCCTTTCTTCAAAATGAGTGGTGCAATGGGACTATCCAAGTCTAGCATTTTATTGTTTTGGCTTTCGGTTTTAGTTGTTTGTGTTACCTCCGTTGCGGGTGCTCGGAAGACGTTGTTTTTGGATCACAACGGTGTTAGAGACAACAAAAACAGCTTGACAACTACACTGGCAGAGACGACAATCAACAGGTGCAAGTACTCGAAGAACAACGACGTTAACGACCTCCATTGTTGTGAGTGCTTCTTCTTGAGCTCTAAGAAGATGATGATGATCGATAATAATAATGGCACCAACTTTGAAGAGAAAAGGGTTGTTCCTACTGGCCCTAACCCACTTCACAATTAAGTAGAGAGGAAAAAGAACAAGTGATCAAGATCAAGATCAAAGTCAATAATATATAATATTATAGTTTATGCTGATCTTGATTATTATCATGCATGATTATGA

mRNA sequence

ATGAGTGGTGCAATGGGACTATCCAAGTCTAGCATTTTATTGTTTTGGCTTTCGGTTTTAGTTGTTTGTGTTACCTCCGTTGCGGGTGCTCGGAAGACGTTGTTTTTGGATCACAACGGTGTTAGAGACAACAAAAACAGCTTGACAACTACACTGGCAGAGACGACAATCAACAGGTGCAAGTACTCGAAGAACAACGACGTTAACGACCTCCATTGTTGTGAGTGCTTCTTCTTGAGCTCTAAGAAGATGATGATGATCGATAATAATAATGGCACCAACTTTGAAGAGAAAAGGGTTGTTCCTACTGGCCCTAACCCACTTCACAATTAA

Coding sequence (CDS)

ATGAGTGGTGCAATGGGACTATCCAAGTCTAGCATTTTATTGTTTTGGCTTTCGGTTTTAGTTGTTTGTGTTACCTCCGTTGCGGGTGCTCGGAAGACGTTGTTTTTGGATCACAACGGTGTTAGAGACAACAAAAACAGCTTGACAACTACACTGGCAGAGACGACAATCAACAGGTGCAAGTACTCGAAGAACAACGACGTTAACGACCTCCATTGTTGTGAGTGCTTCTTCTTGAGCTCTAAGAAGATGATGATGATCGATAATAATAATGGCACCAACTTTGAAGAGAAAAGGGTTGTTCCTACTGGCCCTAACCCACTTCACAATTAA

Protein sequence

MSGAMGLSKSSILLFWLSVLVVCVTSVAGARKTLFLDHNGVRDNKNSLTTTLAETTINRCKYSKNNDVNDLHCCECFFLSSKKMMMIDNNNGTNFEEKRVVPTGPNPLHN*
Homology
BLAST of CsaV3_1G032100 vs. NCBI nr
Match: KGN65507.1 (hypothetical protein Csa_019832 [Cucumis sativus])

HSP 1 Score: 225.7 bits (574), Expect = 2.0e-55
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 0

Query: 1   MSGAMGLSKSSILLFWLSVLVVCVTSVAGARKTLFLDHNGVRDNKNSLTTTLAETTINRC 60
           MSGAMGLSKSSILLFWLSVLVVCVTSVAGARKTLFLDHNGVRDNKNSLTTTLAETTINRC
Sbjct: 1   MSGAMGLSKSSILLFWLSVLVVCVTSVAGARKTLFLDHNGVRDNKNSLTTTLAETTINRC 60

Query: 61  KYSKNNDVNDLHCCECFFLSSKKMMMIDNNNGTNFEEKRVVPTGPNPLHN 111
           KYSKNNDVNDLHCCECFFLSSKKMMMIDNNNGTNFEEKRVVPTGPNPLHN
Sbjct: 61  KYSKNNDVNDLHCCECFFLSSKKMMMIDNNNGTNFEEKRVVPTGPNPLHN 110

BLAST of CsaV3_1G032100 vs. NCBI nr
Match: KAA0058189.1 (Clavata3/ESR (CLE) protein [Cucumis melo var. makuwa] >TYK28553.1 Clavata3/ESR (CLE) gene family member [Cucumis melo var. makuwa])

HSP 1 Score: 199.1 bits (505), Expect = 2.0e-47
Identity = 101/111 (90.99%), Postives = 104/111 (93.69%), Query Frame = 0

Query: 1   MSGAMGLSKSSILLFWLSVLVVCVTSVAGARKTLFLDHNGVRDNKNSLTTTLAETTINRC 60
           MSGAMGLSKSSIL+FWLSVLVVCVTSVAGARK LFL HNGVRDNKNSLTTT  ETTINRC
Sbjct: 1   MSGAMGLSKSSILVFWLSVLVVCVTSVAGARKPLFLGHNGVRDNKNSLTTTPGETTINRC 60

Query: 61  KYSKNNDVNDLHCCECFFLSSKK-MMMIDNNNGTNFEEKRVVPTGPNPLHN 111
           KYSKNN  NDLHCCECFFLSSKK MMMI+NNNGTNFE+KRVVPTGPNPLHN
Sbjct: 61  KYSKNN-ANDLHCCECFFLSSKKMMMMINNNNGTNFEDKRVVPTGPNPLHN 110

BLAST of CsaV3_1G032100 vs. NCBI nr
Match: KAG6587715.1 (hypothetical protein SDJN03_16280, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 94.7 bits (234), Expect = 5.2e-16
Identity = 60/106 (56.60%), Postives = 72/106 (67.92%), Query Frame = 0

Query: 5   MGLSKSSILLFWLSVLVVCVTSVAGARKTLFLDHNGVRDNKNSLTTTLAETTINRCKYSK 64
           M L++SSIL+  LSV  VC+ SV GARK LFL  +  RDN NSL  T+A  +  RCK  K
Sbjct: 1   MRLAQSSILVLSLSVF-VCIGSVVGARKMLFLAQDSTRDN-NSL--TIAMESSRRCKSKK 60

Query: 65  NNDVNDLHCCECFFLSSKKMMMIDNNNGTNFEEKRVVPTGPNPLHN 111
                 L+CCECFF SS+KM+   NN  ++ EEKRVVPTGPNPLHN
Sbjct: 61  ------LYCCECFFSSSEKMI---NNATSSSEEKRVVPTGPNPLHN 93

BLAST of CsaV3_1G032100 vs. NCBI nr
Match: XP_023003872.1 (putative receptor-like protein kinase At4g00960 [Cucurbita maxima])

HSP 1 Score: 63.2 bits (152), Expect = 1.7e-06
Identity = 45/92 (48.91%), Postives = 56/92 (60.87%), Query Frame = 0

Query: 9   KSSILLFWLSVLVVCVTSVAGARKTLFLDHNGVRDNKNSLTTTLAETTINRCKYSKNNDV 68
           +SSIL+  LSV  VC+ SV GARK LFL  +  RDN NSL  T+A     RCK  K    
Sbjct: 113 RSSILVLSLSVF-VCIGSVVGARKMLFLAQDSTRDN-NSL--TIAMENSRRCKSKK---- 172

Query: 69  NDLHCCECFFLSSKKMMMIDNNNGTNFEEKRV 101
             L+CC CFF SS+K +   NN  ++ EEKR+
Sbjct: 173 --LYCCGCFFSSSEKTI---NNATSSSEEKRL 191

BLAST of CsaV3_1G032100 vs. ExPASy TrEMBL
Match: A0A0A0LXI1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G433060 PE=4 SV=1)

HSP 1 Score: 225.7 bits (574), Expect = 9.5e-56
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 0

Query: 1   MSGAMGLSKSSILLFWLSVLVVCVTSVAGARKTLFLDHNGVRDNKNSLTTTLAETTINRC 60
           MSGAMGLSKSSILLFWLSVLVVCVTSVAGARKTLFLDHNGVRDNKNSLTTTLAETTINRC
Sbjct: 1   MSGAMGLSKSSILLFWLSVLVVCVTSVAGARKTLFLDHNGVRDNKNSLTTTLAETTINRC 60

Query: 61  KYSKNNDVNDLHCCECFFLSSKKMMMIDNNNGTNFEEKRVVPTGPNPLHN 111
           KYSKNNDVNDLHCCECFFLSSKKMMMIDNNNGTNFEEKRVVPTGPNPLHN
Sbjct: 61  KYSKNNDVNDLHCCECFFLSSKKMMMIDNNNGTNFEEKRVVPTGPNPLHN 110

BLAST of CsaV3_1G032100 vs. ExPASy TrEMBL
Match: A0A5A7UXE2 (Clavata3/ESR (CLE) gene family member OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold629G002000 PE=4 SV=1)

HSP 1 Score: 199.1 bits (505), Expect = 9.5e-48
Identity = 101/111 (90.99%), Postives = 104/111 (93.69%), Query Frame = 0

Query: 1   MSGAMGLSKSSILLFWLSVLVVCVTSVAGARKTLFLDHNGVRDNKNSLTTTLAETTINRC 60
           MSGAMGLSKSSIL+FWLSVLVVCVTSVAGARK LFL HNGVRDNKNSLTTT  ETTINRC
Sbjct: 1   MSGAMGLSKSSILVFWLSVLVVCVTSVAGARKPLFLGHNGVRDNKNSLTTTPGETTINRC 60

Query: 61  KYSKNNDVNDLHCCECFFLSSKK-MMMIDNNNGTNFEEKRVVPTGPNPLHN 111
           KYSKNN  NDLHCCECFFLSSKK MMMI+NNNGTNFE+KRVVPTGPNPLHN
Sbjct: 61  KYSKNN-ANDLHCCECFFLSSKKMMMMINNNNGTNFEDKRVVPTGPNPLHN 110

BLAST of CsaV3_1G032100 vs. ExPASy TrEMBL
Match: A0A6J1KNU3 (putative receptor-like protein kinase At4g00960 OS=Cucurbita maxima OX=3661 GN=LOC111497330 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 8.1e-07
Identity = 45/92 (48.91%), Postives = 56/92 (60.87%), Query Frame = 0

Query: 9   KSSILLFWLSVLVVCVTSVAGARKTLFLDHNGVRDNKNSLTTTLAETTINRCKYSKNNDV 68
           +SSIL+  LSV  VC+ SV GARK LFL  +  RDN NSL  T+A     RCK  K    
Sbjct: 113 RSSILVLSLSVF-VCIGSVVGARKMLFLAQDSTRDN-NSL--TIAMENSRRCKSKK---- 172

Query: 69  NDLHCCECFFLSSKKMMMIDNNNGTNFEEKRV 101
             L+CC CFF SS+K +   NN  ++ EEKR+
Sbjct: 173 --LYCCGCFFSSSEKTI---NNATSSSEEKRL 191

BLAST of CsaV3_1G032100 vs. ExPASy TrEMBL
Match: A0A2P5BBD9 (Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_326890 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 6.4e-04
Identity = 30/86 (34.88%), Postives = 45/86 (52.33%), Query Frame = 0

Query: 27  VAGARKTLFLDHNGVRDNKNSLTTTLAETTINRCKYSKNNDVNDLHCCECFFLSS--KKM 86
           +   R    +D+NG R   ++ TT   +  ++ C+ S    V  LH C  +F +S  K  
Sbjct: 17  LTSTRDYFIIDNNGTRRRSSNETTANLQARVSHCRSSNAKGV--LHFCHYYFSNSNTKNT 76

Query: 87  MMIDNNNGTNFEEKRVVPTGPNPLHN 111
                +N ++ E+KRVVPTG NPLHN
Sbjct: 77  STSITSNTSSSEDKRVVPTGSNPLHN 100

BLAST of CsaV3_1G032100 vs. ExPASy TrEMBL
Match: A0A2P5AD37 (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_344400 PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 8.4e-04
Identity = 30/86 (34.88%), Postives = 45/86 (52.33%), Query Frame = 0

Query: 27  VAGARKTLFLDHNGVRDNKNSLTTTLAETTINRCKYSKNNDVNDLHCCECFFLSS--KKM 86
           +   R    +D+NG R   ++ TT   +  ++ C+ S    V  LH C  +F +S  K  
Sbjct: 17  LTNTRGYFIIDNNGTRRRSSNETTANLQARVSHCRRSNTERV--LHFCHYYFSNSNTKNT 76

Query: 87  MMIDNNNGTNFEEKRVVPTGPNPLHN 111
                +N ++ E+KRVVPTG NPLHN
Sbjct: 77  NTSITSNTSSSEDKRVVPTGSNPLHN 100

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KGN65507.12.0e-55100.00hypothetical protein Csa_019832 [Cucumis sativus][more]
KAA0058189.12.0e-4790.99Clavata3/ESR (CLE) protein [Cucumis melo var. makuwa] >TYK28553.1 Clavata3/ESR (... [more]
KAG6587715.15.2e-1656.60hypothetical protein SDJN03_16280, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_023003872.11.7e-0648.91putative receptor-like protein kinase At4g00960 [Cucurbita maxima][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LXI19.5e-56100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G433060 PE=4 SV=1[more]
A0A5A7UXE29.5e-4890.99Clavata3/ESR (CLE) gene family member OS=Cucumis melo var. makuwa OX=1194695 GN=... [more]
A0A6J1KNU38.1e-0748.91putative receptor-like protein kinase At4g00960 OS=Cucurbita maxima OX=3661 GN=L... [more]
A0A2P5BBD96.4e-0434.88Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_326890 PE=4 SV... [more]
A0A2P5AD378.4e-0434.88Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_344400 PE... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_1G032100.1CsaV3_1G032100.1mRNA