CsaV3_1G032080 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_1G032080
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr1: 19072745 .. 19075444 (-)
RNA-Seq ExpressionCsaV3_1G032080
SyntenyCsaV3_1G032080
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CCAAGATAACCTGATCTTTATTTCGGCAGATAAAGTTAGGAAATGAGATCCTCACATTTTATTTTCTTTTGCCTTCTCTTTACTTTCTTCTATCTTCGTTCAATGGATCTTTTGCATTCTCCACCTCCACTTTTCACCTCCGAAGGAAGACAAGCAAGAAAGTACCTTGGTACATCCTTTTCCCACGAGGTATGCTACTTCTTTATTTATTTTCTTTTATATATTTATTTATTTCTGAATCTTTCAAGTACTTTTGAGAATCCCTTATTTGTGGTTATGAATATGCCAAACTGCAGGTTCATGAAGACGAGTTCAATAGACCGTCTCCAAAAGATACGTCCTCCAACACACCTGAATATGAAGCAAGTATCAACAGCTTGGGTGAACTTGTATACCACATTGACTATCATGGAGTGACAACGCATCCCAATCCAACGCCAAAACATCCATAGCAAACATATCAACTTTTAAGATGAAATGAATTATTCATACATGTACTGCACTTCAAATACTCTCTTTTGTTTTACAATCTATCAAATGCTAATTTTTTTCATGCTACAATTATATACAAGGTGTAACCTTCCCCCCCAAATCGGCACCTAGTAGCAACAGGCTCCTTACCCAGAGAACCATTGCAGATAAGTCATGGTTGAGCGCTTATTTGAGCTTGCAACTTGCCAAAATATATGTGATTCTGTGAACATGAACCTGAATTGCTTGAAATAGGAATGTCGTTGGGAAAGAACCAGACACATTAATCACTCGTAATTCAATGCAAAGAAATCATTCCTTTCGTATATTGGCTTCTGACCTTTCTAAACCTCTTGAGCAACTTTTTGTAGCACTCCACAGCGTTCTCAAATCTCACTTCACTACAAAATCTAGATTTT

mRNA sequence

ATGAGATCCTCACATTTTATTTTCTTTTGCCTTCTCTTTACTTTCTTCTATCTTCGTTCAATGGATCTTTTGCATTCTCCACCTCCACTTTTCACCTCCGAAGGAAGACAAGCAAGAAAGTACCTTGGTACATCCTTTTCCCACGAGGTTCATGAAGACGAGTTCAATAGACCGTCTCCAAAAGATACGTCCTCCAACACACCTGAATATGAAGCAAGTATCAACAGCTTGGGTGAACTTGTATACCACATTGACTATCATGGAGTGACAACGCATCCCAATCCAACGCCAAAACATCCATAG

Coding sequence (CDS)

ATGAGATCCTCACATTTTATTTTCTTTTGCCTTCTCTTTACTTTCTTCTATCTTCGTTCAATGGATCTTTTGCATTCTCCACCTCCACTTTTCACCTCCGAAGGAAGACAAGCAAGAAAGTACCTTGGTACATCCTTTTCCCACGAGGTTCATGAAGACGAGTTCAATAGACCGTCTCCAAAAGATACGTCCTCCAACACACCTGAATATGAAGCAAGTATCAACAGCTTGGGTGAACTTGTATACCACATTGACTATCATGGAGTGACAACGCATCCCAATCCAACGCCAAAACATCCATAG

Protein sequence

MRSSHFIFFCLLFTFFYLRSMDLLHSPPPLFTSEGRQARKYLGTSFSHEVHEDEFNRPSPKDTSSNTPEYEASINSLGELVYHIDYHGVTTHPNPTPKHP*
Homology
BLAST of CsaV3_1G032080 vs. NCBI nr
Match: KGN65505.1 (hypothetical protein Csa_019778 [Cucumis sativus])

HSP 1 Score: 210.7 bits (535), Expect = 5.9e-51
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0

Query: 1   MRSSHFIFFCLLFTFFYLRSMDLLHSPPPLFTSEGRQARKYLGTSFSHEVHEDEFNRPSP 60
           MRSSHFIFFCLLFTFFYLRSMDLLHSPPPLFTSEGRQARKYLGTSFSHEVHEDEFNRPSP
Sbjct: 1   MRSSHFIFFCLLFTFFYLRSMDLLHSPPPLFTSEGRQARKYLGTSFSHEVHEDEFNRPSP 60

Query: 61  KDTSSNTPEYEASINSLGELVYHIDYHGVTTHPNPTPKHP 101
           KDTSSNTPEYEASINSLGELVYHIDYHGVTTHPNPTPKHP
Sbjct: 61  KDTSSNTPEYEASINSLGELVYHIDYHGVTTHPNPTPKHP 100

BLAST of CsaV3_1G032080 vs. NCBI nr
Match: KAA0058191.1 (uncharacterized protein E6C27_scaffold274G005110 [Cucumis melo var. makuwa] >TYK28554.1 uncharacterized protein E5676_scaffold629G002010 [Cucumis melo var. makuwa])

HSP 1 Score: 156.0 bits (393), Expect = 1.7e-34
Identity = 75/87 (86.21%), Postives = 77/87 (88.51%), Query Frame = 0

Query: 21  MDLLHSPPPLFTSEGRQARKYLGTSFS-------HEVHEDEFNRPSPKDTSSNTPEYEAS 80
           MDLLHSPP LFTSEGR ARKYLGTSFS       HEVHEDEFNRPSPKD SSNTPE+EAS
Sbjct: 1   MDLLHSPPRLFTSEGRPARKYLGTSFSNYPKSEYHEVHEDEFNRPSPKDMSSNTPEHEAS 60

Query: 81  INSLGELVYHIDYHGVTTHPNPTPKHP 101
           INSLGEL+YHIDYHGVTTHPNPTPKHP
Sbjct: 61  INSLGELIYHIDYHGVTTHPNPTPKHP 87

BLAST of CsaV3_1G032080 vs. NCBI nr
Match: XP_022921360.1 (uncharacterized protein LOC111429652 [Cucurbita moschata] >KAG7023353.1 hypothetical protein SDJN02_14378, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 147.1 bits (370), Expect = 8.0e-32
Identity = 77/108 (71.30%), Postives = 83/108 (76.85%), Query Frame = 0

Query: 1   MRSSHFIFFCLLFTFFYLRSMDLLHSPPPLFTSEGRQARKYLGTSFSH--------EVHE 60
           M SSHF+FF LLF  FYL S+  L SPPP   S GR ARKYLG+SFS+        EVHE
Sbjct: 1   MGSSHFLFFFLLFNLFYLLSVHRLQSPPP---STGRPARKYLGSSFSNPESEFLKVEVHE 60

Query: 61  DEFNRPSPKDTSSNTPEYEASINSLGELVYHIDYHGVTTHPNPTPKHP 101
           DEFNRPS KD SSN PEYEASI+ +GELVYHIDYHGVTTHPNPTPKHP
Sbjct: 61  DEFNRPSAKDISSNIPEYEASIDRMGELVYHIDYHGVTTHPNPTPKHP 105

BLAST of CsaV3_1G032080 vs. NCBI nr
Match: KAG6589671.1 (hypothetical protein SDJN03_15094, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 145.6 bits (366), Expect = 2.3e-31
Identity = 76/108 (70.37%), Postives = 83/108 (76.85%), Query Frame = 0

Query: 1   MRSSHFIFFCLLFTFFYLRSMDLLHSPPPLFTSEGRQARKYLGTSFSH--------EVHE 60
           M SSHF+FF LLF  FYL S+  L SPPP   S GR ARKYLG+SFS+        +VHE
Sbjct: 1   MGSSHFLFFFLLFNLFYLLSVHRLQSPPP---STGRPARKYLGSSFSNPESEFLKVKVHE 60

Query: 61  DEFNRPSPKDTSSNTPEYEASINSLGELVYHIDYHGVTTHPNPTPKHP 101
           DEFNRPS KD SSN PEYEASI+ +GELVYHIDYHGVTTHPNPTPKHP
Sbjct: 61  DEFNRPSAKDISSNIPEYEASIDRMGELVYHIDYHGVTTHPNPTPKHP 105

BLAST of CsaV3_1G032080 vs. NCBI nr
Match: XP_023515382.1 (uncharacterized protein LOC111779554 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 143.7 bits (361), Expect = 8.9e-31
Identity = 75/108 (69.44%), Postives = 82/108 (75.93%), Query Frame = 0

Query: 1   MRSSHFIFFCLLFTFFYLRSMDLLHSPPPLFTSEGRQARKYLGTSFSH--------EVHE 60
           M SSHF+FF LLF  FYL S+  L SPPP     GR ARKYLG+SFS+        EVH+
Sbjct: 1   MGSSHFLFFFLLFNLFYLLSVHRLQSPPPY---TGRPARKYLGSSFSNPESEFLKVEVHK 60

Query: 61  DEFNRPSPKDTSSNTPEYEASINSLGELVYHIDYHGVTTHPNPTPKHP 101
           DEFNRPS KD SSN PEYEASI+ +GELVYHIDYHGVTTHPNPTPKHP
Sbjct: 61  DEFNRPSAKDISSNIPEYEASIDRMGELVYHIDYHGVTTHPNPTPKHP 105

BLAST of CsaV3_1G032080 vs. ExPASy TrEMBL
Match: A0A0A0LUD6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G427550 PE=4 SV=1)

HSP 1 Score: 210.7 bits (535), Expect = 2.9e-51
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0

Query: 1   MRSSHFIFFCLLFTFFYLRSMDLLHSPPPLFTSEGRQARKYLGTSFSHEVHEDEFNRPSP 60
           MRSSHFIFFCLLFTFFYLRSMDLLHSPPPLFTSEGRQARKYLGTSFSHEVHEDEFNRPSP
Sbjct: 1   MRSSHFIFFCLLFTFFYLRSMDLLHSPPPLFTSEGRQARKYLGTSFSHEVHEDEFNRPSP 60

Query: 61  KDTSSNTPEYEASINSLGELVYHIDYHGVTTHPNPTPKHP 101
           KDTSSNTPEYEASINSLGELVYHIDYHGVTTHPNPTPKHP
Sbjct: 61  KDTSSNTPEYEASINSLGELVYHIDYHGVTTHPNPTPKHP 100

BLAST of CsaV3_1G032080 vs. ExPASy TrEMBL
Match: A0A5D3DYI5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold629G002010 PE=4 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 8.4e-35
Identity = 75/87 (86.21%), Postives = 77/87 (88.51%), Query Frame = 0

Query: 21  MDLLHSPPPLFTSEGRQARKYLGTSFS-------HEVHEDEFNRPSPKDTSSNTPEYEAS 80
           MDLLHSPP LFTSEGR ARKYLGTSFS       HEVHEDEFNRPSPKD SSNTPE+EAS
Sbjct: 1   MDLLHSPPRLFTSEGRPARKYLGTSFSNYPKSEYHEVHEDEFNRPSPKDMSSNTPEHEAS 60

Query: 81  INSLGELVYHIDYHGVTTHPNPTPKHP 101
           INSLGEL+YHIDYHGVTTHPNPTPKHP
Sbjct: 61  INSLGELIYHIDYHGVTTHPNPTPKHP 87

BLAST of CsaV3_1G032080 vs. ExPASy TrEMBL
Match: A0A6J1E5F1 (uncharacterized protein LOC111429652 OS=Cucurbita moschata OX=3662 GN=LOC111429652 PE=4 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 3.9e-32
Identity = 77/108 (71.30%), Postives = 83/108 (76.85%), Query Frame = 0

Query: 1   MRSSHFIFFCLLFTFFYLRSMDLLHSPPPLFTSEGRQARKYLGTSFSH--------EVHE 60
           M SSHF+FF LLF  FYL S+  L SPPP   S GR ARKYLG+SFS+        EVHE
Sbjct: 1   MGSSHFLFFFLLFNLFYLLSVHRLQSPPP---STGRPARKYLGSSFSNPESEFLKVEVHE 60

Query: 61  DEFNRPSPKDTSSNTPEYEASINSLGELVYHIDYHGVTTHPNPTPKHP 101
           DEFNRPS KD SSN PEYEASI+ +GELVYHIDYHGVTTHPNPTPKHP
Sbjct: 61  DEFNRPSAKDISSNIPEYEASIDRMGELVYHIDYHGVTTHPNPTPKHP 105

BLAST of CsaV3_1G032080 vs. ExPASy TrEMBL
Match: A0A6J1JGL7 (uncharacterized protein LOC111484929 OS=Cucurbita maxima OX=3661 GN=LOC111484929 PE=4 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 8.1e-30
Identity = 74/108 (68.52%), Postives = 80/108 (74.07%), Query Frame = 0

Query: 1   MRSSHFIFFCLLFTFFYLRSMDLLHSPPPLFTSEGRQARKYLGTSFSH--------EVHE 60
           M SSHF+FF LLF  FYL S+  L SPP    S GR ARKYLG+ FS+        EVHE
Sbjct: 1   MGSSHFLFFFLLFNLFYLLSVHRLQSPP---LSTGRPARKYLGSLFSNPESEFLKVEVHE 60

Query: 61  DEFNRPSPKDTSSNTPEYEASINSLGELVYHIDYHGVTTHPNPTPKHP 101
           DE NRPS KD SSN PEYEASI+ +GELVYHIDYHGVTTHPNPTPKHP
Sbjct: 61  DELNRPSAKDISSNIPEYEASIDRMGELVYHIDYHGVTTHPNPTPKHP 105

BLAST of CsaV3_1G032080 vs. ExPASy TrEMBL
Match: A0A2P5B1U7 (Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_335130 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 2.5e-10
Identity = 44/107 (41.12%), Postives = 60/107 (56.07%), Query Frame = 0

Query: 1   MRSSHFIFFCLLFTFFYLRSMDLLHSPPPLFTSEGRQARKYLGTSFSHEVHEDEFNRPSP 60
           MR+   IFFCLL    YL S    +S   +F    RQ+ + LG S    V E    + + 
Sbjct: 1   MRALAIIFFCLLTALLYLSSQSSTYSSSLVFLPRTRQSMRKLGMSSPIRVDEHRNIKVTE 60

Query: 61  KDT-------SSNTPEYEASINSLGELVYHIDYHGVTTHPNPTPKHP 101
           KD+       +S T ++E+S +++ E+VYH DYHG TTHP PTPKHP
Sbjct: 61  KDSKISTLEENSMTIKHESSDDNMEEVVYHTDYHGATTHPTPTPKHP 107

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KGN65505.15.9e-51100.00hypothetical protein Csa_019778 [Cucumis sativus][more]
KAA0058191.11.7e-3486.21uncharacterized protein E6C27_scaffold274G005110 [Cucumis melo var. makuwa] >TYK... [more]
XP_022921360.18.0e-3271.30uncharacterized protein LOC111429652 [Cucurbita moschata] >KAG7023353.1 hypothet... [more]
KAG6589671.12.3e-3170.37hypothetical protein SDJN03_15094, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_023515382.18.9e-3169.44uncharacterized protein LOC111779554 [Cucurbita pepo subsp. pepo][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LUD62.9e-51100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G427550 PE=4 SV=1[more]
A0A5D3DYI58.4e-3586.21Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A6J1E5F13.9e-3271.30uncharacterized protein LOC111429652 OS=Cucurbita moschata OX=3662 GN=LOC1114296... [more]
A0A6J1JGL78.1e-3068.52uncharacterized protein LOC111484929 OS=Cucurbita maxima OX=3661 GN=LOC111484929... [more]
A0A2P5B1U72.5e-1041.12Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_335130 PE=4 SV... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 49..70

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_1G032080.1CsaV3_1G032080.1mRNA