CsaV3_1G031190 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_1G031190
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Small nuclear ribonucleoprotein E
Location	chr1: 18404453 .. 18408115 (+)
RNA-Seq Expression	CsaV3_1G031190
Synteny	CsaV3_1G031190

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGAGCACCAAAGTGCAGAGGATTATGACCCAGCCCATTGTAAGCGCACTATAATGTTTTCATTTTTCTTACTTCCTCATTTATCTATTCCTCTGTTTTACTTATAGTTTCCGTATGTGTCACCTTTTTGTTTTTACTTCATCCCGGTGTTGCTGCTGCTTCCTTGGAACTAGAACTTGATATTCAGGTTTCTTCAAAGTGTAAGTAACTTACTCCTCCAAATTTTGGTTACTTATTTCTACCTTTTCTGGTCTACTTTTGTTTTGTTTTTTCTAATTCCAGTTTGTTTGAAACCATTGCAGAAAGCTCGTATTCAGATTTGGCTATTTGAGCAAAAGGACCTGAGGATTGAAGGCCGAATCATTGTAAGTTTTTTTTTTTTTTTTTTGCTGGTTTACCTGTTTTTTTCTTTTTCTTTTTTGCTATTAATGTAATGGGGATAGTTTGATTTTAGTTCTCTTCATAGTTGGATGGATGGATGGATGGATGGATACAATTTACTTTCCCATATGCTTGCTTCTCACAGTAATTCTATTTTTTCAGTCTAGCAAAAAGGACATCAGTGTTTAAAGTTTTTCGATGTTCTTGCTAAGGGCCTTGAACTCCTACTACGCAATCTTATAATGAACTCAACTTGGGTCAAGTTGAATTTGAATCTAATCGAATAAATTGGGATATCTTCCAGATTGTGTTAACTGTTTTACTATTTTGATTGTCTTTTACATTGCTATCAAGTGGCAAAACACATGGTGGAAATTGGTTGAAATCAACATAGCATGAAATTGCTACTTATGTAGGCTACCAACCAACTCGCCCTAGAAATAGGAATGTGGACTATAGTAGTTCTAATTTCTCATTTCTGTAGCTTGTGATAATTAGTTGGGTCCCAGTGTGAGATAGATTGAGTCTCTAATGGAAAAAATTTTACATGCTTAAATTAAACCACCATTGGGATCACCAAAAACTAAACTTTGTTTCCATGAAGCCTCAAATTATGCCAAGGGCACATATCAATTACTCCTATGATTTGCAGTATTCTTTAAGAAATTGGTTCCTCTTCTGTTGTTAGACACACCTTGAAATGTAAGTTCTAAGAGATGTCCCCTTGCCTTCGGATTCATTACCATCTGTTTATACCTCTTTGAAGTTAGTTTATTCTTCCACGTAAGATTGTATGCTGTTTTTTTGTACATAATTAAGCTATATTTCTGTCTCTTTTGTGGCAAAATTCTCTTTATCACTTTGAATCATTCTGACCAGTTCAGCCGAAAACTTTTCCTGACTGAATGTTGTTCACAGAATTCTGACAGAGCATATTTGCTTTCATTATTCCTCATGTGAACTGAGTGAATCAAGTCTTTAGTCTCTTCACTTTGGATATTTAATTGTATGGAGTTTTTTTTTCTAAAATAAAATATTTAATGAAAAACACAACTTTCATTGAGAAAGAATGAAAAGAATACACGAGCAAAAAAAAAAAACCAAGCCTACAAAAAGAGGAATCCCACTATAAGAAGGGACTCCAACCATACAAAATCAAGCTCATAGAATTGAAGTAGCGTATTTCATGTCCTTTTTGTCTACTTCCACATTATTACGATTTCATTCTTAGTTGCTCTTTTGCATCTATTACTTCTAATTTGTAAGCAAAAAAGCTGTAGCCATAAAGTCCATGATGCACTTTTTAAAACATTGTGGGTGGTTGTACAGTTAGTAATGTAGCATACCCTGTTTAGAATATAGATCATGTTCTTCCATTATATCTCATTACGTAGTCCAATGAGCTAAATAGGGTGTAAATAGTCTGCTGCATAGATTGTGATGTGTTCTCAGCATCCTTCTTATTTTTTAAGTCATGAGACCCTTTGCTAGGACCACAATTTTCATTGTTGAGAGAATTACTCTGGGGCTTGGGCTTTTTCTTCCTGTTTAAATTTCATATTTCATAGATATATGGAACTGTTCCTTACCCCCTAAAAAAGTTATTTGGTCATCTACTCTTCCCAATGATCTAATAATGTTCATGTAGTTTTTTCAACTATTTTGCTTTGCCTAAGATTCTGTAAATACATGCAGGAGTGTGTTTATGGCTTATGGCATTATATTGTACTTGAAAATTTGATTTTTTTGTTTTATCGTTTGTTGTAAATTTGTAACTTGTAAGTCCCATGTTTTGGCTGACTAATTAATATTGTTATAACTTATAAGGGAGGTAGATAGAGGATGCTGATCCTTTTTCACCATTAGATTGATTATATTTTCTTGGTCGTATAGGGATTTGATGAGTACATGAATTTAGTGCTTGATGATGCTGAGGAAGTTAATGTCAAGAAAAAGAGTAAAAAGGCACTTGGTATGGTCTTCTTTCCCCCTTATTTGCTATTCTTTTCTATATTTCAATGACAATGTTATATGAAATGCCTTTTTTATGTCCGTTCAGGGAGGATTCTTCTTAAGGGAGACAATATTACACTAATGATGAACTCGTAAGTGAAACAAACTTGCCTTTCCTCTCCATTTCCCTTACACCAACTAACTTCCTTTTCTTTTCTTTTTTTAGGGGAAAATGATGCAGCAGAACACATTATTGAGATAAAGTTTTCACTTTCGTTGTATGGTTCTATAGCTTTCACAACTACCTTCTGTTTGGAGTTGTATCTTTCAATGTTTTAAGCCATCAATGATTAACTAGTTCTTTGGATGTATGATGTTATATTGCTGTTGATAGGTAACATTCTGGCGGTAAAGCCCTTACAATTACGTTCTGTTGAGAGGTTGTTTCTTTCAATGTTTTAACCCATTGCTGATCAGCTAGTTCTTTGGATGTATAATGTAATGTTATATTGCTGTTGGTAGGTTATCCATGTATGTGAACACCTCTTAGTTTATCATCGTTATAATTGGTTGTTTACACCAACCAATCCTTGAAACTATTAATTTAGGTTCCTTGAATCATAAACTATAAACAGTGGAGCACAGTTTGAGAACGTTCGGTTTATTTTGAGAGGAACACTGGTTGCCCTTAATTCTGATTGTCTTCGTCCTCGGAGAAAAAAGAGTGTCACCCTTCTTATACTATATGCAAGATTGATTACCAAGTTATGTTGTGAGGATGAGTTCTAATATTACTTTTTAGAGTATTTTGTTGCAATTTAAAAGATAAACTTACATGGGGACATCTTTGCTTAAGGCAACTCTTCTGGGTATATATCCATAGACTTAATATTGGGCCAAGCTCTCCAGCAGTAGTATGAGTATCCAAGTTCAAGCTATTATCCAGGAAGGATAAAAAAGCACTTAACAAGAGGCCCATAGGCAGTATTGGGTGTGGGGTACTAAATTATTCCCTTTTTGATCATATATACACATGTATATGAGCAATAAATCTAATACAGTGCTGGTTCTGCTTTTGTCGTTTTTACATGATGTAGGCAATCATGAAGTTGCAAAGGGGAAGGTGAAGCAGATAAAAGGCAGACATCCATTAGTAGACTTCTGGTGATAAAAGGTAATCTGAGCACCAGGGTGTGGGAAGAAAGATTGGACTACGAACGAAGCCAAGAGAAGGTGGTGGTGGCCGGTGGGACACACATGGGGTCAGGGAATCACGCCCTTCTAGCTCGTTTAACCATTGTCTTCTGCTTGCAACTGGCAATATGA

mRNA sequence

ATGGCGAGCACCAAAGTGCAGAGGATTATGACCCAGCCCATTAACTTGATATTCAGGTTTCTTCAAAGTAAAGCTCGTATTCAGATTTGGCTATTTGAGCAAAAGGACCTGAGGATTGAAGGCCGAATCATTGGATTTGATGAGTACATGAATTTAGTGCTTGATGATGCTGAGGAAGTTAATGTCAAGAAAAAGAGTAAAAAGGCACTTGGGAGGATTCTTCTTAAGGGAGACAATATTACACTAATGATGAACTCTTGCAAAGGGGAAGGTGAAGCAGATAAAAGGCAGACATCCATTAGTAGACTTCTGGTGATAAAAGGTAATCTGAGCACCAGGGTGTGGGAAGAAAGATTGGACTACGAACGAAGCCAAGAGAAGGTGGTGGTGGCCGGTGGGACACACATGGGGTCAGGGAATCACGCCCTTCTAGCTCGTTTAACCATTGTCTTCTGCTTGCAACTGGCAATATGA

Coding sequence (CDS)

ATGGCGAGCACCAAAGTGCAGAGGATTATGACCCAGCCCATTAACTTGATATTCAGGTTTCTTCAAAGTAAAGCTCGTATTCAGATTTGGCTATTTGAGCAAAAGGACCTGAGGATTGAAGGCCGAATCATTGGATTTGATGAGTACATGAATTTAGTGCTTGATGATGCTGAGGAAGTTAATGTCAAGAAAAAGAGTAAAAAGGCACTTGGGAGGATTCTTCTTAAGGGAGACAATATTACACTAATGATGAACTCTTGCAAAGGGGAAGGTGAAGCAGATAAAAGGCAGACATCCATTAGTAGACTTCTGGTGATAAAAGGTAATCTGAGCACCAGGGTGTGGGAAGAAAGATTGGACTACGAACGAAGCCAAGAGAAGGTGGTGGTGGCCGGTGGGACACACATGGGGTCAGGGAATCACGCCCTTCTAGCTCGTTTAACCATTGTCTTCTGCTTGCAACTGGCAATATGA

Protein sequence

MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKALGRILLKGDNITLMMNSCKGEGEADKRQTSISRLLVIKGNLSTRVWEERLDYERSQEKVVVAGGTHMGSGNHALLARLTIVFCLQLAI*

Homology

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BLAST of CsaV3_1G031190 vs. NCBI nr
Match: KAE8653153.1 (hypothetical protein Csa_019571 [Cucumis sativus])

HSP 1 Score: 307.0 bits (785), Expect = 9.5e-80
Identity = 157/157 (100.00%), Postives = 157/157 (100.00%), Query Frame = 0


Query: 1   MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
           MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV
Sbjct: 1   MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60

Query: 61  NVKKKSKKALGRILLKGDNITLMMNSCKGEGEADKRQTSISRLLVIKGNLSTRVWEERLD 120
           NVKKKSKKALGRILLKGDNITLMMNSCKGEGEADKRQTSISRLLVIKGNLSTRVWEERLD
Sbjct: 61  NVKKKSKKALGRILLKGDNITLMMNSCKGEGEADKRQTSISRLLVIKGNLSTRVWEERLD 120

Query: 121 YERSQEKVVVAGGTHMGSGNHALLARLTIVFCLQLAI 158
           YERSQEKVVVAGGTHMGSGNHALLARLTIVFCLQLAI
Sbjct: 121 YERSQEKVVVAGGTHMGSGNHALLARLTIVFCLQLAI 157

[Close]

BLAST of CsaV3_1G031190 vs. NCBI nr
Match: XP_004146294.1 (small nuclear ribonucleoprotein E [Cucumis sativus] >XP_031736171.1 small nuclear ribonucleoprotein E [Cucumis sativus])

HSP 1 Score: 168.3 bits (425), Expect = 5.3e-38
Identity = 87/88 (98.86%), Postives = 87/88 (98.86%), Query Frame = 0


Query: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
          MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV
Sbjct: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60

Query: 61 NVKKKSKKALGRILLKGDNITLMMNSCK 89
          NVKKKSKKALGRILLKGDNITLMMNS K
Sbjct: 61 NVKKKSKKALGRILLKGDNITLMMNSGK 88

[Close]

BLAST of CsaV3_1G031190 vs. NCBI nr
Match: XP_008453647.1 (PREDICTED: small nuclear ribonucleoprotein E-like [Cucumis melo] >XP_008453648.1 PREDICTED: small nuclear ribonucleoprotein E-like [Cucumis melo] >XP_008453649.1 PREDICTED: small nuclear ribonucleoprotein E-like [Cucumis melo])

HSP 1 Score: 167.2 bits (422), Expect = 1.2e-37
Identity = 86/88 (97.73%), Postives = 87/88 (98.86%), Query Frame = 0


Query: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
          MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV
Sbjct: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60

Query: 61 NVKKKSKKALGRILLKGDNITLMMNSCK 89
          NVKKKSKKALGRILLKGDNITLMMN+ K
Sbjct: 61 NVKKKSKKALGRILLKGDNITLMMNAGK 88

[Close]

BLAST of CsaV3_1G031190 vs. NCBI nr
Match: XP_038880616.1 (small nuclear ribonucleoprotein E-like isoform X1 [Benincasa hispida])

HSP 1 Score: 167.2 bits (422), Expect = 1.2e-37
Identity = 86/88 (97.73%), Postives = 87/88 (98.86%), Query Frame = 0


Query: 1   MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
           MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV
Sbjct: 40  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 99

Query: 61  NVKKKSKKALGRILLKGDNITLMMNSCK 89
           NVKKKSKKALGRILLKGDNITLMMN+ K
Sbjct: 100 NVKKKSKKALGRILLKGDNITLMMNTGK 127

[Close]

BLAST of CsaV3_1G031190 vs. NCBI nr
Match: XP_022921760.1 (small nuclear ribonucleoprotein E-like isoform X2 [Cucurbita moschata] >XP_022988524.1 small nuclear ribonucleoprotein E-like isoform X2 [Cucurbita maxima] >XP_023516210.1 small nuclear ribonucleoprotein E-like [Cucurbita pepo subsp. pepo] >KAG6589730.1 Small nuclear ribonucleoprotein E, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 167.2 bits (422), Expect = 1.2e-37
Identity = 86/88 (97.73%), Postives = 87/88 (98.86%), Query Frame = 0


Query: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
          MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV
Sbjct: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60

Query: 61 NVKKKSKKALGRILLKGDNITLMMNSCK 89
          NVKKKSKKALGRILLKGDNITLMMN+ K
Sbjct: 61 NVKKKSKKALGRILLKGDNITLMMNTGK 88

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BLAST of CsaV3_1G031190 vs. ExPASy Swiss-Prot
Match: A4FUI2 (Small nuclear ribonucleoprotein E OS=Bos taurus OX=9913 GN=SNRPE PE=3 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 6.7e-28
Identity = 58/81 (71.60%), Postives = 74/81 (91.36%), Query Frame = 0


Query: 5  KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKK 64
          KVQ++M QPINLIFR+LQ+++RIQ+WL+EQ ++RIEG IIGFDEYMNLVLDDAEE++ K 
Sbjct: 9  KVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKT 68

Query: 65 KSKKALGRILLKGDNITLMMN 86
          KS+K LGRI+LKGDNITL+ +
Sbjct: 69 KSRKQLGRIMLKGDNITLLQS 89

[Close]

BLAST of CsaV3_1G031190 vs. ExPASy Swiss-Prot
Match: P62303 (Small nuclear ribonucleoprotein E OS=Gallus gallus OX=9031 GN=SNRPE PE=3 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 6.7e-28
Identity = 58/81 (71.60%), Postives = 74/81 (91.36%), Query Frame = 0


Query: 5  KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKK 64
          KVQ++M QPINLIFR+LQ+++RIQ+WL+EQ ++RIEG IIGFDEYMNLVLDDAEE++ K 
Sbjct: 9  KVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKT 68

Query: 65 KSKKALGRILLKGDNITLMMN 86
          KS+K LGRI+LKGDNITL+ +
Sbjct: 69 KSRKQLGRIMLKGDNITLLQS 89

[Close]

BLAST of CsaV3_1G031190 vs. ExPASy Swiss-Prot
Match: P62304 (Small nuclear ribonucleoprotein E OS=Homo sapiens OX=9606 GN=SNRPE PE=1 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 6.7e-28
Identity = 58/81 (71.60%), Postives = 74/81 (91.36%), Query Frame = 0


Query: 5  KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKK 64
          KVQ++M QPINLIFR+LQ+++RIQ+WL+EQ ++RIEG IIGFDEYMNLVLDDAEE++ K 
Sbjct: 9  KVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKT 68

Query: 65 KSKKALGRILLKGDNITLMMN 86
          KS+K LGRI+LKGDNITL+ +
Sbjct: 69 KSRKQLGRIMLKGDNITLLQS 89

[Close]

BLAST of CsaV3_1G031190 vs. ExPASy Swiss-Prot
Match: P62305 (Small nuclear ribonucleoprotein E OS=Mus musculus OX=10090 GN=Snrpe PE=1 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 6.7e-28
Identity = 58/81 (71.60%), Postives = 74/81 (91.36%), Query Frame = 0


Query: 5  KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKK 64
          KVQ++M QPINLIFR+LQ+++RIQ+WL+EQ ++RIEG IIGFDEYMNLVLDDAEE++ K 
Sbjct: 9  KVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKT 68

Query: 65 KSKKALGRILLKGDNITLMMN 86
          KS+K LGRI+LKGDNITL+ +
Sbjct: 69 KSRKQLGRIMLKGDNITLLQS 89

[Close]

BLAST of CsaV3_1G031190 vs. ExPASy Swiss-Prot
Match: A1XQR9 (Small nuclear ribonucleoprotein E OS=Sus scrofa OX=9823 GN=SNRPE PE=3 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 6.7e-28
Identity = 58/81 (71.60%), Postives = 74/81 (91.36%), Query Frame = 0


Query: 5  KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKK 64
          KVQ++M QPINLIFR+LQ+++RIQ+WL+EQ ++RIEG IIGFDEYMNLVLDDAEE++ K 
Sbjct: 9  KVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKT 68

Query: 65 KSKKALGRILLKGDNITLMMN 86
          KS+K LGRI+LKGDNITL+ +
Sbjct: 69 KSRKQLGRIMLKGDNITLLQS 89

[Close]

BLAST of CsaV3_1G031190 vs. ExPASy TrEMBL
Match: A0A0A0LUF2 (Small nuclear ribonucleoprotein E OS=Cucumis sativus OX=3659 GN=Csa_1G418790 PE=3 SV=1)

HSP 1 Score: 168.3 bits (425), Expect = 2.5e-38
Identity = 87/88 (98.86%), Postives = 87/88 (98.86%), Query Frame = 0


Query: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
          MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV
Sbjct: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60

Query: 61 NVKKKSKKALGRILLKGDNITLMMNSCK 89
          NVKKKSKKALGRILLKGDNITLMMNS K
Sbjct: 61 NVKKKSKKALGRILLKGDNITLMMNSGK 88

[Close]

BLAST of CsaV3_1G031190 vs. ExPASy TrEMBL
Match: A0A1S3BXJ8 (Small nuclear ribonucleoprotein E OS=Cucumis melo OX=3656 GN=LOC103494302 PE=3 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 5.7e-38
Identity = 86/88 (97.73%), Postives = 87/88 (98.86%), Query Frame = 0


Query: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
          MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV
Sbjct: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60

Query: 61 NVKKKSKKALGRILLKGDNITLMMNSCK 89
          NVKKKSKKALGRILLKGDNITLMMN+ K
Sbjct: 61 NVKKKSKKALGRILLKGDNITLMMNAGK 88

[Close]

BLAST of CsaV3_1G031190 vs. ExPASy TrEMBL
Match: A0A6J1JLU4 (Small nuclear ribonucleoprotein E OS=Cucurbita maxima OX=3661 GN=LOC111485738 PE=3 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 5.7e-38
Identity = 86/88 (97.73%), Postives = 87/88 (98.86%), Query Frame = 0


Query: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
          MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV
Sbjct: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60

Query: 61 NVKKKSKKALGRILLKGDNITLMMNSCK 89
          NVKKKSKKALGRILLKGDNITLMMN+ K
Sbjct: 61 NVKKKSKKALGRILLKGDNITLMMNTGK 88

[Close]

BLAST of CsaV3_1G031190 vs. ExPASy TrEMBL
Match: A0A6J1E6Q3 (Small nuclear ribonucleoprotein E OS=Cucurbita moschata OX=3662 GN=LOC111429915 PE=3 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 5.7e-38
Identity = 86/88 (97.73%), Postives = 87/88 (98.86%), Query Frame = 0


Query: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
          MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV
Sbjct: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60

Query: 61 NVKKKSKKALGRILLKGDNITLMMNSCK 89
          NVKKKSKKALGRILLKGDNITLMMN+ K
Sbjct: 61 NVKKKSKKALGRILLKGDNITLMMNTGK 88

[Close]

BLAST of CsaV3_1G031190 vs. ExPASy TrEMBL
Match: A0A1U8JTM2 (Small nuclear ribonucleoprotein E OS=Gossypium hirsutum OX=3635 GN=LOC107909182 PE=3 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 1.3e-37
Identity = 85/88 (96.59%), Postives = 87/88 (98.86%), Query Frame = 0


Query: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
          MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV
Sbjct: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60

Query: 61 NVKKKSKKALGRILLKGDNITLMMNSCK 89
          NVKKKS+K+LGRILLKGDNITLMMNS K
Sbjct: 61 NVKKKSRKSLGRILLKGDNITLMMNSGK 88

[Close]

BLAST of CsaV3_1G031190 vs. TAIR 10
Match: AT4G30330.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 157.1 bits (396), Expect = 1.1e-38
Identity = 79/88 (89.77%), Postives = 85/88 (96.59%), Query Frame = 0


Query: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
          MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRI GFDEYMNLVLD+AEEV
Sbjct: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRITGFDEYMNLVLDEAEEV 60

Query: 61 NVKKKSKKALGRILLKGDNITLMMNSCK 89
          ++KKK++K LGRILLKGDNITLMMN+ K
Sbjct: 61 SIKKKTRKPLGRILLKGDNITLMMNAGK 88

[Close]

BLAST of CsaV3_1G031190 vs. TAIR 10
Match: AT2G18740.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 155.2 bits (391), Expect = 4.3e-38
Identity = 78/88 (88.64%), Postives = 84/88 (95.45%), Query Frame = 0


Query: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
          MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRI GFDEYMNLVLD+AEEV
Sbjct: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRITGFDEYMNLVLDEAEEV 60

Query: 61 NVKKKSKKALGRILLKGDNITLMMNSCK 89
          ++KK ++K LGRILLKGDNITLMMN+ K
Sbjct: 61 SIKKNTRKPLGRILLKGDNITLMMNTGK 88

[Close]

BLAST of CsaV3_1G031190 vs. TAIR 10
Match: AT2G18740.2 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 127.5 bits (319), Expect = 9.6e-30
Identity = 63/71 (88.73%), Postives = 68/71 (95.77%), Query Frame = 0


Query: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
          MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRI GFDEYMNLVLD+AEEV
Sbjct: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRITGFDEYMNLVLDEAEEV 60

Query: 61 NVKKKSKKALG 72
          ++KK ++K LG
Sbjct: 61 SIKKNTRKPLG 71

[Close]

BLAST of CsaV3_1G031190 vs. TAIR 10
Match: AT5G48870.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 45.4 bits (106), Expect = 4.8e-05
Identity = 26/74 (35.14%), Postives = 43/74 (58.11%), Query Frame = 0


Query: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKA--L 72
          P  LI R + SK    IW+  + D  + G + GFD Y+N+VL+D  E  +  + ++   L
Sbjct: 10 PSELIDRCIGSK----IWVIMKGDKELVGILKGFDVYVNMVLEDVTEYEITAEGRRVTKL 69

Query: 73 GRILLKGDNITLMM 85
           +ILL G+NI +++
Sbjct: 70 DQILLNGNNIAILV 79

The following BLAST results are available for this feature:

BLAST of CsaV3_1G031190 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8653153.1	9.5e-80	100.00	hypothetical protein Csa_019571 [Cucumis sativus]	[more]
XP_004146294.1	5.3e-38	98.86	small nuclear ribonucleoprotein E [Cucumis sativus] >XP_031736171.1 small nuclea...	[more]
XP_008453647.1	1.2e-37	97.73	PREDICTED: small nuclear ribonucleoprotein E-like [Cucumis melo] >XP_008453648.1...	[more]
XP_038880616.1	1.2e-37	97.73	small nuclear ribonucleoprotein E-like isoform X1 [Benincasa hispida]	[more]
XP_022921760.1	1.2e-37	97.73	small nuclear ribonucleoprotein E-like isoform X2 [Cucurbita moschata] >XP_02298...	[more]

BLAST of CsaV3_1G031190 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A4FUI2	6.7e-28	71.60	Small nuclear ribonucleoprotein E OS=Bos taurus OX=9913 GN=SNRPE PE=3 SV=1	[more]
P62303	6.7e-28	71.60	Small nuclear ribonucleoprotein E OS=Gallus gallus OX=9031 GN=SNRPE PE=3 SV=1	[more]
P62304	6.7e-28	71.60	Small nuclear ribonucleoprotein E OS=Homo sapiens OX=9606 GN=SNRPE PE=1 SV=1	[more]
P62305	6.7e-28	71.60	Small nuclear ribonucleoprotein E OS=Mus musculus OX=10090 GN=Snrpe PE=1 SV=1	[more]
A1XQR9	6.7e-28	71.60	Small nuclear ribonucleoprotein E OS=Sus scrofa OX=9823 GN=SNRPE PE=3 SV=1	[more]

BLAST of CsaV3_1G031190 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LUF2	2.5e-38	98.86	Small nuclear ribonucleoprotein E OS=Cucumis sativus OX=3659 GN=Csa_1G418790 PE=...	[more]
A0A1S3BXJ8	5.7e-38	97.73	Small nuclear ribonucleoprotein E OS=Cucumis melo OX=3656 GN=LOC103494302 PE=3 S...	[more]
A0A6J1JLU4	5.7e-38	97.73	Small nuclear ribonucleoprotein E OS=Cucurbita maxima OX=3661 GN=LOC111485738 PE...	[more]
A0A6J1E6Q3	5.7e-38	97.73	Small nuclear ribonucleoprotein E OS=Cucurbita moschata OX=3662 GN=LOC111429915 ...	[more]
A0A1U8JTM2	1.3e-37	96.59	Small nuclear ribonucleoprotein E OS=Gossypium hirsutum OX=3635 GN=LOC107909182 ...	[more]

BLAST of CsaV3_1G031190 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G30330.1	1.1e-38	89.77	Small nuclear ribonucleoprotein family protein	[more]
AT2G18740.1	4.3e-38	88.64	Small nuclear ribonucleoprotein family protein	[more]
AT2G18740.2	9.6e-30	88.73	Small nuclear ribonucleoprotein family protein	[more]
AT5G48870.1	4.8e-05	35.14	Small nuclear ribonucleoprotein family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001163	LSM domain, eukaryotic/archaea-type	SMART	SM00651	Sm3	coord: 19..85 e-value: 1.5E-17 score: 74.3
IPR001163	LSM domain, eukaryotic/archaea-type	PFAM	PF01423	LSM	coord: 20..83 e-value: 1.8E-17 score: 62.7
None	No IPR available	GENE3D	2.30.30.100		coord: 1..87 e-value: 4.1E-41 score: 140.7
None	No IPR available	PANTHER	PTHR11193:SF3	SMALL NUCLEAR RIBONUCLEOPROTEIN E	coord: 1..88
IPR027078	Small nuclear ribonucleoprotein E	PANTHER	PTHR11193	SMALL NUCLEAR RIBONUCLEOPROTEIN E	coord: 1..88
IPR027078	Small nuclear ribonucleoprotein E	CDD	cd01718	Sm_E	coord: 7..85 e-value: 1.61154E-53 score: 161.953
IPR010920	LSM domain superfamily	SUPERFAMILY	50182	Sm-like ribonucleoproteins	coord: 12..84

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_1G031190.1	CsaV3_1G031190.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000398	mRNA splicing, via spliceosome
cellular_component	GO:0005681	spliceosomal complex