CsaV3_1G030680 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_1G030680
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Transposase
Location	chr1: 17651536 .. 17652226 (+)
RNA-Seq Expression	CsaV3_1G030680
Synteny	CsaV3_1G030680

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTATCCTTGCATTAACGAAGGAGAGCGGGAAGAATTTGTTAGATCTAGAGTATGTCCACATTTTGAGGTATCAATGAACTTATAGATTTTTAGGTTTTAAATATTTGTTAAGAAACTTTATAAAACCCCAATACAATGTTATATTTGTGTAGGACAAAAGAAAAGTTCAACAAGAGAGAAGGAAGAAGAATAAGTATAACCATAAGCTTTCAAGAAAAGGTTATGCTAATCTTCGAGAGGAATTGGTAAGAAGTAGTTTATGTTTGAATTAGTCTGAAAAGCTTCTTAATCAATCTAATATAATGCATTGTATATATTGAAATGTAGAAAAATAACCCTTCAGAAGAAGGTGATCTTGATCGAGCTAGCATGTGGAAGAAGGCTCGTGTAGATAAGAAGAGAGAATATGACAATGAACACGTTCAAGAAATTATGAATTGTATAGTAAGATACATATTACAATTTTACATTCTTTAAAGTTTTTAAGTTTTATGAAATTAAGCTACATTTTTTTACATTTTTAGGATGAGATCTCAAAGACATATGTTGACAAAGAGCCATCTCCAAACGATGTTTTGACACAAGCTTTGGGTACAAAAGAGCTTAGTGGACTTTTACATGGAGTTGCCAGGTTTTTCACCCCAACTACTTACTTCCAATACAACAAAACACTCAAAGAAACGAAGTGA

mRNA sequence

ATGTATCCTTGCATTAACGAAGGAGAGCGGGAAGAATTTGTTAGATCTAGAGTATGTCCACATTTTGAGGACAAAAGAAAAGTTCAACAAGAGAGAAGGAAGAAGAATAAGTATAACCATAAGCTTTCAAGAAAAGGTTATGCTAATCTTCGAGAGGAATTGAAAAATAACCCTTCAGAAGAAGGTGATCTTGATCGAGCTAGCATGTGGAAGAAGGCTCGTGTAGATAAGAAGAGAGAATATGACAATGAACACGTTCAAGAAATTATGAATTGTATAGATGAGATCTCAAAGACATATGTTGACAAAGAGCCATCTCCAAACGATGTTTTGACACAAGCTTTGGGTACAAAAGAGCTTAGTGGACTTTTACATGGAGTTGCCAGGTTTTTCACCCCAACTACTTACTTCCAATACAACAAAACACTCAAAGAAACGAAGTGA

Coding sequence (CDS)

ATGTATCCTTGCATTAACGAAGGAGAGCGGGAAGAATTTGTTAGATCTAGAGTATGTCCACATTTTGAGGACAAAAGAAAAGTTCAACAAGAGAGAAGGAAGAAGAATAAGTATAACCATAAGCTTTCAAGAAAAGGTTATGCTAATCTTCGAGAGGAATTGAAAAATAACCCTTCAGAAGAAGGTGATCTTGATCGAGCTAGCATGTGGAAGAAGGCTCGTGTAGATAAGAAGAGAGAATATGACAATGAACACGTTCAAGAAATTATGAATTGTATAGATGAGATCTCAAAGACATATGTTGACAAAGAGCCATCTCCAAACGATGTTTTGACACAAGCTTTGGGTACAAAAGAGCTTAGTGGACTTTTACATGGAGTTGCCAGGTTTTTCACCCCAACTACTTACTTCCAATACAACAAAACACTCAAAGAAACGAAGTGA

Protein sequence

MYPCINEGEREEFVRSRVCPHFEDKRKVQQERRKKNKYNHKLSRKGYANLREELKNNPSEEGDLDRASMWKKARVDKKREYDNEHVQEIMNCIDEISKTYVDKEPSPNDVLTQALGTKELSGLLHGVARFFTPTTYFQYNKTLKETK*

Homology

[Close]

BLAST of CsaV3_1G030680 vs. NCBI nr
Match: KAE8653128.1 (hypothetical protein Csa_020048 [Cucumis sativus])

HSP 1 Score: 298.1 bits (762), Expect = 4.1e-77
Identity = 147/147 (100.00%), Postives = 147/147 (100.00%), Query Frame = 0


Query: 1   MYPCINEGEREEFVRSRVCPHFEDKRKVQQERRKKNKYNHKLSRKGYANLREELKNNPSE 60
           MYPCINEGEREEFVRSRVCPHFEDKRKVQQERRKKNKYNHKLSRKGYANLREELKNNPSE
Sbjct: 1   MYPCINEGEREEFVRSRVCPHFEDKRKVQQERRKKNKYNHKLSRKGYANLREELKNNPSE 60

Query: 61  EGDLDRASMWKKARVDKKREYDNEHVQEIMNCIDEISKTYVDKEPSPNDVLTQALGTKEL 120
           EGDLDRASMWKKARVDKKREYDNEHVQEIMNCIDEISKTYVDKEPSPNDVLTQALGTKEL
Sbjct: 61  EGDLDRASMWKKARVDKKREYDNEHVQEIMNCIDEISKTYVDKEPSPNDVLTQALGTKEL 120

Query: 121 SGLLHGVARFFTPTTYFQYNKTLKETK 148
           SGLLHGVARFFTPTTYFQYNKTLKETK
Sbjct: 121 SGLLHGVARFFTPTTYFQYNKTLKETK 147

[Close]

BLAST of CsaV3_1G030680 vs. NCBI nr
Match: XP_031744860.1 (uncharacterized protein LOC105434490 [Cucumis sativus] >XP_031744894.1 uncharacterized protein LOC105434490 [Cucumis sativus] >XP_031744918.1 uncharacterized protein LOC105434490 [Cucumis sativus] >XP_031744949.1 uncharacterized protein LOC105434490 [Cucumis sativus] >XP_031744971.1 uncharacterized protein LOC105434490 [Cucumis sativus])

HSP 1 Score: 258.1 bits (658), Expect = 4.7e-65
Identity = 128/128 (100.00%), Postives = 128/128 (100.00%), Query Frame = 0


Query: 1   MYPCINEGEREEFVRSRVCPHFEDKRKVQQERRKKNKYNHKLSRKGYANLREELKNNPSE 60
           MYPCINEGEREEFVRSRVCPHFEDKRKVQQERRKKNKYNHKLSRKGYANLREELKNNPSE
Sbjct: 1   MYPCINEGEREEFVRSRVCPHFEDKRKVQQERRKKNKYNHKLSRKGYANLREELKNNPSE 60

Query: 61  EGDLDRASMWKKARVDKKREYDNEHVQEIMNCIDEISKTYVDKEPSPNDVLTQALGTKEL 120
           EGDLDRASMWKKARVDKKREYDNEHVQEIMNCIDEISKTYVDKEPSPNDVLTQALGTKEL
Sbjct: 61  EGDLDRASMWKKARVDKKREYDNEHVQEIMNCIDEISKTYVDKEPSPNDVLTQALGTKEL 120

Query: 121 SGLLHGVA 129
           SGLLHGVA
Sbjct: 121 SGLLHGVA 128

[Close]

BLAST of CsaV3_1G030680 vs. NCBI nr
Match: TYK03264.1 (transposase [Cucumis melo var. makuwa])

HSP 1 Score: 206.1 bits (523), Expect = 2.1e-49
Identity = 105/145 (72.41%), Postives = 121/145 (83.45%), Query Frame = 0


Query: 1   MYPCINEGEREEFVRSRVCPHFEDKRKVQQERRKKNKYNHKLSRKGYANLREELKNNPSE 60
           MY  I++ + +EFVRSR+CPHFEDKRK+QQERRKKNKYNH+LSRKGYANL+EELKN PSE
Sbjct: 585 MYSYIDQKQWKEFVRSRLCPHFEDKRKLQQERRKKNKYNHRLSRKGYANLQEELKNIPSE 644

Query: 61  EGDLDRASMWKKARVDKKREYDNEHVQEIMNCIDEISKTYVDKEPSPNDVLTQALGTKEL 120
           E +L RASMWKK RVDKK +YDNE VQE++N IDEISKT  DKE SPNDVLTQALGT+E 
Sbjct: 645 ESELGRASMWKKVRVDKKGQYDNEDVQEVVNRIDEISKTCADKESSPNDVLTQALGTRES 704

Query: 121 SGLLHGVARFFTPTTYFQYNKTLKE 146
           SG + GV RF TP+TYF   K  K+
Sbjct: 705 SGRVRGVGRFVTPSTYFHTAKRSKK 729

[Close]

BLAST of CsaV3_1G030680 vs. NCBI nr
Match: KAA0046884.1 (transposase [Cucumis melo var. makuwa])

HSP 1 Score: 206.1 bits (523), Expect = 2.1e-49
Identity = 105/145 (72.41%), Postives = 121/145 (83.45%), Query Frame = 0


Query: 1   MYPCINEGEREEFVRSRVCPHFEDKRKVQQERRKKNKYNHKLSRKGYANLREELKNNPSE 60
           MY  I++ + +EFVRSR+CPHFEDKRK+QQERRKKNKYNH+LSRKGYANL+EELKN PSE
Sbjct: 585 MYSYIDQKQWKEFVRSRLCPHFEDKRKLQQERRKKNKYNHRLSRKGYANLQEELKNIPSE 644

Query: 61  EGDLDRASMWKKARVDKKREYDNEHVQEIMNCIDEISKTYVDKEPSPNDVLTQALGTKEL 120
           E +L RASMWKK RVDKK +YDNE VQE++N IDEISKT  DKE SPNDVLTQALGT+E 
Sbjct: 645 ESELGRASMWKKVRVDKKGQYDNEDVQEVVNRIDEISKTCADKESSPNDVLTQALGTRES 704

Query: 121 SGLLHGVARFFTPTTYFQYNKTLKE 146
           SG + GV RF TP+TYF   K  K+
Sbjct: 705 SGRVRGVGRFVTPSTYFHTAKRSKK 729

[Close]

BLAST of CsaV3_1G030680 vs. NCBI nr
Match: TYJ99669.1 (transposase [Cucumis melo var. makuwa])

HSP 1 Score: 205.3 bits (521), Expect = 3.6e-49
Identity = 105/145 (72.41%), Postives = 120/145 (82.76%), Query Frame = 0


Query: 1   MYPCINEGEREEFVRSRVCPHFEDKRKVQQERRKKNKYNHKLSRKGYANLREELKNNPSE 60
           MY  I++ + EEFVRSR+CPHFEDKRK+QQERRKKNKYNH+LSRKGYAN+REELKN PSE
Sbjct: 484 MYSYIDQKQWEEFVRSRLCPHFEDKRKLQQERRKKNKYNHRLSRKGYANIREELKNIPSE 543

Query: 61  EGDLDRASMWKKARVDKKREYDNEHVQEIMNCIDEISKTYVDKEPSPNDVLTQALGTKEL 120
           E +LDRASMWKKAR DKKR+ DN+ VQE+MN IDEI KT  DK+PSPNDVLTQALGT E 
Sbjct: 544 ESELDRASMWKKARADKKRQCDNKDVQEVMNRIDEIFKTCADKKPSPNDVLTQALGTLES 603

Query: 121 SGLLHGVARFFTPTTYFQYNKTLKE 146
           SG + GV  F TP+TYF   K  K+
Sbjct: 604 SGRVRGVGGFVTPSTYFHTAKRSKK 628

[Close]

BLAST of CsaV3_1G030680 vs. ExPASy TrEMBL
Match: A0A5A7TUX7 (Transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold230G00410 PE=3 SV=1)

HSP 1 Score: 206.1 bits (523), Expect = 1.0e-49
Identity = 105/145 (72.41%), Postives = 121/145 (83.45%), Query Frame = 0


Query: 1   MYPCINEGEREEFVRSRVCPHFEDKRKVQQERRKKNKYNHKLSRKGYANLREELKNNPSE 60
           MY  I++ + +EFVRSR+CPHFEDKRK+QQERRKKNKYNH+LSRKGYANL+EELKN PSE
Sbjct: 585 MYSYIDQKQWKEFVRSRLCPHFEDKRKLQQERRKKNKYNHRLSRKGYANLQEELKNIPSE 644

Query: 61  EGDLDRASMWKKARVDKKREYDNEHVQEIMNCIDEISKTYVDKEPSPNDVLTQALGTKEL 120
           E +L RASMWKK RVDKK +YDNE VQE++N IDEISKT  DKE SPNDVLTQALGT+E 
Sbjct: 645 ESELGRASMWKKVRVDKKGQYDNEDVQEVVNRIDEISKTCADKESSPNDVLTQALGTRES 704

Query: 121 SGLLHGVARFFTPTTYFQYNKTLKE 146
           SG + GV RF TP+TYF   K  K+
Sbjct: 705 SGRVRGVGRFVTPSTYFHTAKRSKK 729

[Close]

BLAST of CsaV3_1G030680 vs. ExPASy TrEMBL
Match: A0A5D3BVS7 (Transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold298G00870 PE=4 SV=1)

HSP 1 Score: 206.1 bits (523), Expect = 1.0e-49
Identity = 105/145 (72.41%), Postives = 121/145 (83.45%), Query Frame = 0


Query: 1   MYPCINEGEREEFVRSRVCPHFEDKRKVQQERRKKNKYNHKLSRKGYANLREELKNNPSE 60
           MY  I++ + +EFVRSR+CPHFEDKRK+QQERRKKNKYNH+LSRKGYANL+EELKN PSE
Sbjct: 585 MYSYIDQKQWKEFVRSRLCPHFEDKRKLQQERRKKNKYNHRLSRKGYANLQEELKNIPSE 644

Query: 61  EGDLDRASMWKKARVDKKREYDNEHVQEIMNCIDEISKTYVDKEPSPNDVLTQALGTKEL 120
           E +L RASMWKK RVDKK +YDNE VQE++N IDEISKT  DKE SPNDVLTQALGT+E 
Sbjct: 645 ESELGRASMWKKVRVDKKGQYDNEDVQEVVNRIDEISKTCADKESSPNDVLTQALGTRES 704

Query: 121 SGLLHGVARFFTPTTYFQYNKTLKE 146
           SG + GV RF TP+TYF   K  K+
Sbjct: 705 SGRVRGVGRFVTPSTYFHTAKRSKK 729

[Close]

BLAST of CsaV3_1G030680 vs. ExPASy TrEMBL
Match: A0A5D3BL24 (Transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold562G00560 PE=4 SV=1)

HSP 1 Score: 205.3 bits (521), Expect = 1.8e-49
Identity = 105/145 (72.41%), Postives = 120/145 (82.76%), Query Frame = 0


Query: 1   MYPCINEGEREEFVRSRVCPHFEDKRKVQQERRKKNKYNHKLSRKGYANLREELKNNPSE 60
           MY  I++ + EEFVRSR+CPHFEDKRK+QQERRKKNKYNH+LSRKGYAN+REELKN PSE
Sbjct: 484 MYSYIDQKQWEEFVRSRLCPHFEDKRKLQQERRKKNKYNHRLSRKGYANIREELKNIPSE 543

Query: 61  EGDLDRASMWKKARVDKKREYDNEHVQEIMNCIDEISKTYVDKEPSPNDVLTQALGTKEL 120
           E +LDRASMWKKAR DKKR+ DN+ VQE+MN IDEI KT  DK+PSPNDVLTQALGT E 
Sbjct: 544 ESELDRASMWKKARADKKRQCDNKDVQEVMNRIDEIFKTCADKKPSPNDVLTQALGTLES 603

Query: 121 SGLLHGVARFFTPTTYFQYNKTLKE 146
           SG + GV  F TP+TYF   K  K+
Sbjct: 604 SGRVRGVGGFVTPSTYFHTAKRSKK 628

[Close]

BLAST of CsaV3_1G030680 vs. ExPASy TrEMBL
Match: A0A5A7UIK3 (Transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold437G00620 PE=4 SV=1)

HSP 1 Score: 202.2 bits (513), Expect = 1.5e-48
Identity = 103/145 (71.03%), Postives = 119/145 (82.07%), Query Frame = 0


Query: 1   MYPCINEGEREEFVRSRVCPHFEDKRKVQQERRKKNKYNHKLSRKGYANLREELKNNPSE 60
           MY  I++ + EEFVRSR+CPHFEDKRK+QQERRKKNKYNH+LSRKGYANLREELKN PSE
Sbjct: 347 MYSYIDQKQWEEFVRSRLCPHFEDKRKLQQERRKKNKYNHRLSRKGYANLREELKNIPSE 406

Query: 61  EGDLDRASMWKKARVDKKREYDNEHVQEIMNCIDEISKTYVDKEPSPNDVLTQALGTKEL 120
           E +LDRASMWKKA  DKK +YDN+ VQE++N IDEI KT  DK+PSPNDV+TQALGT E 
Sbjct: 407 ESELDRASMWKKAPADKKGQYDNKDVQEVVNRIDEIFKTCADKKPSPNDVMTQALGTLES 466

Query: 121 SGLLHGVARFFTPTTYFQYNKTLKE 146
           SG + GV  F TP+TYF   K  K+
Sbjct: 467 SGCVRGVGGFVTPSTYFHTAKRSKK 491

[Close]

BLAST of CsaV3_1G030680 vs. ExPASy TrEMBL
Match: A0A5D3BTB1 (Transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold755G00010 PE=3 SV=1)

HSP 1 Score: 194.9 bits (494), Expect = 2.4e-46
Identity = 100/133 (75.19%), Postives = 112/133 (84.21%), Query Frame = 0


Query: 1   MYPCINEGEREEFVRSRVCPHFEDKRKVQQERRKKNKYNHKLSRKGYANLREELKNNPSE 60
           MY  I++   EEFV+SR+CPHFEDKRK+QQERRKKN YNH+LSRKGYANLREELKN PSE
Sbjct: 414 MYSYIDQKHWEEFVKSRLCPHFEDKRKLQQERRKKNNYNHRLSRKGYANLREELKNIPSE 473

Query: 61  EGDLDRASMWKKARVDKKREYDNEHVQEIMNCIDEISKTYVDKEPSPNDVLTQALGTKEL 120
           E +L RASMWKKARVDKK +YDNE VQE++N IDEISKT  DKE SPNDVLTQALGT+E 
Sbjct: 474 ESELGRASMWKKARVDKKEQYDNEDVQEVVNRIDEISKTCADKESSPNDVLTQALGTRES 533

Query: 121 SGLLHGVARFFTP 134
           SG + GV  F TP
Sbjct: 534 SGRVCGVGGFVTP 546

The following BLAST results are available for this feature:

BLAST of CsaV3_1G030680 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8653128.1	4.1e-77	100.00	hypothetical protein Csa_020048 [Cucumis sativus]	[more]
XP_031744860.1	4.7e-65	100.00	uncharacterized protein LOC105434490 [Cucumis sativus] >XP_031744894.1 uncharact...	[more]
TYK03264.1	2.1e-49	72.41	transposase [Cucumis melo var. makuwa]	[more]
KAA0046884.1	2.1e-49	72.41	transposase [Cucumis melo var. makuwa]	[more]
TYJ99669.1	3.6e-49	72.41	transposase [Cucumis melo var. makuwa]	[more]

BLAST of CsaV3_1G030680 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_1G030680 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TUX7	1.0e-49	72.41	Transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold230G00410 PE...	[more]
A0A5D3BVS7	1.0e-49	72.41	Transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold298G00870 PE...	[more]
A0A5D3BL24	1.8e-49	72.41	Transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold562G00560 PE...	[more]
A0A5A7UIK3	1.5e-48	71.03	Transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold437G00620 PE...	[more]
A0A5D3BTB1	2.4e-46	75.19	Transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold755G00010 PE...	[more]

BLAST of CsaV3_1G030680 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 24..46

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_1G030680.1	CsaV3_1G030680.1	mRNA