CsaV3_1G029460 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_1G029460
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	transcription factor IBH1-like 1
Location	chr1: 16272544 .. 16274013 (+)
RNA-Seq Expression	CsaV3_1G029460
Synteny	CsaV3_1G029460

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TTACCCTTTAGGGTTTGGTGGTGGGACATGAACTCCATGTGCTTGCATGTGCTGTGTCTCTCTCTAATTGGCCCACCATTGCCTTCCTTTAAGCACATAAATTGGTTTTTGCACATTCTTCTATTTCTATTTCACTTATAAACTCTCTTGGATCTCTAAATCTTCTCCTTCTCTCTCAATTTTAACATTATAACACATTTCTCAGGTATGTTCAATTTTTTTTTCTCATTTTTTCATCAGATAATTCCATAGTCCTTTCTTATTTTTCTCTACACAACCCATTGAATTCTCTAGTTATTTATTTTTCTTATATTGTTATGATATCATCAGAATGCAGAACTCCAATTCGTTAAAACAAGAATTTTTTAAGAAATGGATGATGGGTCTTCAAATATACACAACCACCAACGAAAACATGACGGTCACAGAGCGAAAAACAGCCATTAAATTATCTGCTGACATAGCTTTAGCATCCTCTCGAAACTGCGCCACCCGGTGGAGTCGAGCGGTTATTGCTCGCTCCTCCGTCGATAACCGAAGCTGTTTTGTGGCTAACGGCGTACTGGGTCGTGGTCTATGCGAGAGAGTGAAGCAAATCAGCAATTTGAAAATCACGCGAAGTTCATGGAGTAGTGGGAAGATTGTGAAAAGAAGCCGTCGTGTGTGGCGGCGGCGGAGGCGGAGGAATAAATGTATGGCGGCGGTGACGATTGCAAGAAGATTAGTGCAAAAAAGAACAAAAGTGCTACGTGGTTTGGTTCCGGGAGGTGAATTTATGGATGAAATTTCGTTGATTGAAGAAACCCTAGATTATATGTCAGCTCTTCAAGCTCAAGTTGATGTAATGAGGTTTCTTGCAACTGCATATAATCCATCATCATCATCATGAAAAGAAAATTCAATTTTTAATTATAATCAATCCCCCCTTTTTTTTTGTTTATTTATTTTCTTTTTTGGCCAACATTCATATGATGAATGTGGATGGAGAAAGTTATGGGCTTTTTTTCTCTCTTTTTTGCACATATATGTGTAGCTAATTTAATTTGAAGTTAATGTAGTGATAATTTGAAAACATTAATTATCTGAGTTGTATGTACATAATATATATATATATCAATTGCTCTCTTCGTTGGTTTAAAATTTTGAAATAATGCATCATTTAATTTTATGCATATAATTGATTATTGTTGGGGAATTTCTTTGGAGGGTGAAAATTGAGAGAGGGGTTTATGTGAAAGTAAAAAAAGTTGTGTATTTTGAGGCATTGCGTGTATGAATAGATGAGATGATGAGAGTGCAAAATTGAATGTTGTGTTGTGTTTGTGGGTTTTTTCCTAATGAAGGCATTTACTTGGGAAAGAGGGGGGTGTTGAGTGTGTTCACATTTTTTGCCCAAATCCAGAGTAATTGAGTGAAAGGGGAGAGTATGTGTTAATGCATGTGGGAGAAATGTGTGTGTTGGTTAGGTGT

mRNA sequence

ATGCAGAACTCCAATTCGTTAAAACAAGAATTTTTTAAGAAATGGATGATGGGTCTTCAAATATACACAACCACCAACGAAAACATGACGGTCACAGAGCGAAAAACAGCCATTAAATTATCTGCTGACATAGCTTTAGCATCCTCTCGAAACTGCGCCACCCGGTGGAGTCGAGCGGTTATTGCTCGCTCCTCCGTCGATAACCGAAGCTGTTTTGTGGCTAACGGCGTACTGGGTCGTGGTCTATGCGAGAGAGTGAAGCAAATCAGCAATTTGAAAATCACGCGAAGTTCATGGAGTAGTGGGAAGATTGTGAAAAGAAGCCGTCGTGTGTGGCGGCGGCGGAGGCGGAGGAATAAATGTATGGCGGCGGTGACGATTGCAAGAAGATTAGTGCAAAAAAGAACAAAAGTGCTACGTGGTTTGGTTCCGGGAGGTGAATTTATGGATGAAATTTCGTTGATTGAAGAAACCCTAGATTATATGTCAGCTCTTCAAGCTCAAGTTGATGTAATGAGGTTTCTTGCAACTGCATATAATCCATCATCATCATCATGA

Coding sequence (CDS)

ATGCAGAACTCCAATTCGTTAAAACAAGAATTTTTTAAGAAATGGATGATGGGTCTTCAAATATACACAACCACCAACGAAAACATGACGGTCACAGAGCGAAAAACAGCCATTAAATTATCTGCTGACATAGCTTTAGCATCCTCTCGAAACTGCGCCACCCGGTGGAGTCGAGCGGTTATTGCTCGCTCCTCCGTCGATAACCGAAGCTGTTTTGTGGCTAACGGCGTACTGGGTCGTGGTCTATGCGAGAGAGTGAAGCAAATCAGCAATTTGAAAATCACGCGAAGTTCATGGAGTAGTGGGAAGATTGTGAAAAGAAGCCGTCGTGTGTGGCGGCGGCGGAGGCGGAGGAATAAATGTATGGCGGCGGTGACGATTGCAAGAAGATTAGTGCAAAAAAGAACAAAAGTGCTACGTGGTTTGGTTCCGGGAGGTGAATTTATGGATGAAATTTCGTTGATTGAAGAAACCCTAGATTATATGTCAGCTCTTCAAGCTCAAGTTGATGTAATGAGGTTTCTTGCAACTGCATATAATCCATCATCATCATCATGA

Protein sequence

MQNSNSLKQEFFKKWMMGLQIYTTTNENMTVTERKTAIKLSADIALASSRNCATRWSRAVIARSSVDNRSCFVANGVLGRGLCERVKQISNLKITRSSWSSGKIVKRSRRVWRRRRRRNKCMAAVTIARRLVQKRTKVLRGLVPGGEFMDEISLIEETLDYMSALQAQVDVMRFLATAYNPSSSS*

Homology

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BLAST of CsaV3_1G029460 vs. NCBI nr
Match: XP_004149880.1 (transcription factor IBH1-like 1 [Cucumis sativus] >KGN65277.1 hypothetical protein Csa_020046 [Cucumis sativus])

HSP 1 Score: 352.1 bits (902), Expect = 3.0e-93
Identity = 185/185 (100.00%), Postives = 185/185 (100.00%), Query Frame = 0


Query: 1   MQNSNSLKQEFFKKWMMGLQIYTTTNENMTVTERKTAIKLSADIALASSRNCATRWSRAV 60
           MQNSNSLKQEFFKKWMMGLQIYTTTNENMTVTERKTAIKLSADIALASSRNCATRWSRAV
Sbjct: 1   MQNSNSLKQEFFKKWMMGLQIYTTTNENMTVTERKTAIKLSADIALASSRNCATRWSRAV 60

Query: 61  IARSSVDNRSCFVANGVLGRGLCERVKQISNLKITRSSWSSGKIVKRSRRVWRRRRRRNK 120
           IARSSVDNRSCFVANGVLGRGLCERVKQISNLKITRSSWSSGKIVKRSRRVWRRRRRRNK
Sbjct: 61  IARSSVDNRSCFVANGVLGRGLCERVKQISNLKITRSSWSSGKIVKRSRRVWRRRRRRNK 120

Query: 121 CMAAVTIARRLVQKRTKVLRGLVPGGEFMDEISLIEETLDYMSALQAQVDVMRFLATAYN 180
           CMAAVTIARRLVQKRTKVLRGLVPGGEFMDEISLIEETLDYMSALQAQVDVMRFLATAYN
Sbjct: 121 CMAAVTIARRLVQKRTKVLRGLVPGGEFMDEISLIEETLDYMSALQAQVDVMRFLATAYN 180

Query: 181 PSSSS 186
           PSSSS
Sbjct: 181 PSSSS 185

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BLAST of CsaV3_1G029460 vs. NCBI nr
Match: XP_008443801.1 (PREDICTED: uncharacterized protein LOC103487305 [Cucumis melo])

HSP 1 Score: 340.9 bits (873), Expect = 7.0e-90
Identity = 179/185 (96.76%), Postives = 181/185 (97.84%), Query Frame = 0


Query: 1   MQNSNSLKQEFFKKWMMGLQIYTTTNENMTVTERKTAIKLSADIALASSRNCATRWSRAV 60
           MQN NSLKQEF KKWMMGLQIYTTTNENMTV ERKTAIKLSADIALASSRNCATRWSRAV
Sbjct: 1   MQNPNSLKQEFLKKWMMGLQIYTTTNENMTVAERKTAIKLSADIALASSRNCATRWSRAV 60

Query: 61  IARSSVDNRSCFVANGVLGRGLCERVKQISNLKITRSSWSSGKIVKRSRRVWRRRRRRNK 120
           IARSSVDNRSC VANGVLGRGLCERVKQISNLKITRSSWSSGKIVKRSRRVWRRRRRRNK
Sbjct: 61  IARSSVDNRSCLVANGVLGRGLCERVKQISNLKITRSSWSSGKIVKRSRRVWRRRRRRNK 120

Query: 121 CMAAVTIARRLVQKRTKVLRGLVPGGEFMDEISLIEETLDYMSALQAQVDVMRFLATAYN 180
           CMAAVTIARRLVQ+RTKVLRGLVPGGEFMDEISLIEETLDYMSALQAQVDVMRFLA+AYN
Sbjct: 121 CMAAVTIARRLVQRRTKVLRGLVPGGEFMDEISLIEETLDYMSALQAQVDVMRFLASAYN 180

Query: 181 PSSSS 186
           PSSSS
Sbjct: 181 PSSSS 185

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BLAST of CsaV3_1G029460 vs. NCBI nr
Match: TYJ95949.1 (transcription factor IBH1-like [Cucumis melo var. makuwa])

HSP 1 Score: 291.6 bits (745), Expect = 4.9e-75
Identity = 155/157 (98.73%), Postives = 156/157 (99.36%), Query Frame = 0


Query: 29  MTVTERKTAIKLSADIALASSRNCATRWSRAVIARSSVDNRSCFVANGVLGRGLCERVKQ 88
           MTVTERKTAIKLSADIALASSRNCATRWSRAVIARSSVDNRSC VANGVLGRGLCERVKQ
Sbjct: 1   MTVTERKTAIKLSADIALASSRNCATRWSRAVIARSSVDNRSCLVANGVLGRGLCERVKQ 60

Query: 89  ISNLKITRSSWSSGKIVKRSRRVWRRRRRRNKCMAAVTIARRLVQKRTKVLRGLVPGGEF 148
           ISNLKITRSSWSSGKIVKRSRRVWRRRRRRNKCMAAVTIARRLVQKRTKVLRGLVPGGEF
Sbjct: 61  ISNLKITRSSWSSGKIVKRSRRVWRRRRRRNKCMAAVTIARRLVQKRTKVLRGLVPGGEF 120

Query: 149 MDEISLIEETLDYMSALQAQVDVMRFLATAYNPSSSS 186
           MDEISLIEETLDYMSALQAQVDVMRFLA+AYNPSSSS
Sbjct: 121 MDEISLIEETLDYMSALQAQVDVMRFLASAYNPSSSS 157

[Close]

BLAST of CsaV3_1G029460 vs. NCBI nr
Match: KAA0035130.1 (transcription factor IBH1-like [Cucumis melo var. makuwa])

HSP 1 Score: 288.5 bits (737), Expect = 4.1e-74
Identity = 153/157 (97.45%), Postives = 155/157 (98.73%), Query Frame = 0


Query: 29  MTVTERKTAIKLSADIALASSRNCATRWSRAVIARSSVDNRSCFVANGVLGRGLCERVKQ 88
           MTV ERKTAIKLSADIALASSRNCATRWSRAVIARSSVDNRSC VANGVLGRGLCERVKQ
Sbjct: 1   MTVAERKTAIKLSADIALASSRNCATRWSRAVIARSSVDNRSCLVANGVLGRGLCERVKQ 60

Query: 89  ISNLKITRSSWSSGKIVKRSRRVWRRRRRRNKCMAAVTIARRLVQKRTKVLRGLVPGGEF 148
           ISNLKITRSSWSSGKIVKRSRRVWRRRRRRNKCMAAVTIARRLVQ+RTKVLRGLVPGGEF
Sbjct: 61  ISNLKITRSSWSSGKIVKRSRRVWRRRRRRNKCMAAVTIARRLVQRRTKVLRGLVPGGEF 120

Query: 149 MDEISLIEETLDYMSALQAQVDVMRFLATAYNPSSSS 186
           MDEISLIEETLDYMSALQAQVDVMRFLA+AYNPSSSS
Sbjct: 121 MDEISLIEETLDYMSALQAQVDVMRFLASAYNPSSSS 157

[Close]

BLAST of CsaV3_1G029460 vs. NCBI nr
Match: XP_038879866.1 (transcription factor IBH1-like 1 [Benincasa hispida])

HSP 1 Score: 278.5 bits (711), Expect = 4.3e-71
Identity = 154/186 (82.80%), Postives = 167/186 (89.78%), Query Frame = 0


Query: 1   MQNSNSLKQEFFKKWMMGLQIYTT-TNENMTVTERKTAIKLSADIALASSRNCATRWSRA 60
           M+N +SLK+EF KKWM GLQIYTT +NENMTV ERKTAIKLSADIALASSRNCATRWSRA
Sbjct: 1   MRNPSSLKREFLKKWMTGLQIYTTSSNENMTVIERKTAIKLSADIALASSRNCATRWSRA 60

Query: 61  VIARSSVDNRSCFVANGVLGRGLCERVKQISNLKITRSSWSSGKIVKRSRRVWRRRRRRN 120
           VIA SSVDNRS  VA+GVLGR +CERVKQISN K+TRSSWSSG I+KRSRRV RRR +  
Sbjct: 61  VIASSSVDNRSRRVADGVLGRAVCERVKQISNSKMTRSSWSSGMILKRSRRVRRRRNKCM 120

Query: 121 KCMAAVTIARRLVQKRTKVLRGLVPGGEFMDEISLIEETLDYMSALQAQVDVMRFLATAY 180
           K MAA ++A+RLV KRTKVLRGLVPGGEFMDEISLIEETLDY+SALQAQVDVMR LATAY
Sbjct: 121 KAMAAESVAKRLVLKRTKVLRGLVPGGEFMDEISLIEETLDYISALQAQVDVMRCLATAY 180

Query: 181 NPSSSS 186
           NPSSSS
Sbjct: 181 NPSSSS 186

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BLAST of CsaV3_1G029460 vs. ExPASy Swiss-Prot
Match: Q9M0B9 (Transcription factor IBH1-like 1 OS=Arabidopsis thaliana OX=3702 GN=IBL1 PE=1 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 3.9e-27
Identity = 77/179 (43.02%), Postives = 122/179 (68.16%), Query Frame = 0


Query: 1   MQNSNSLKQEFFKKWMMGLQIYTTTNENMTVTERKTAIKLSADIALASSRNCATRWSRAV 60
           MQ ++S+ +EF KKW MGLQI+  + +N +V ERK AIKLSAD+A+AS R   T WSRA+
Sbjct: 1   MQPTSSMNEEFLKKWQMGLQIFRPSIDNTSVHERKKAIKLSADVAMASLRKGTTCWSRAL 60

Query: 61  IARSSVDNRSCFVANGVLGRGLCERVKQISNLKITRSSWSSGKIVKRSRRVWRRRRRRNK 120
           I +++ ++   F+   +L  G+  + + + N K+ + +    KIV+RS+++ RR+ +   
Sbjct: 61  IEKTATEDN--FLVRQMLS-GI--KAETLINKKLPKKTVCHRKIVRRSKKILRRKSKSAS 120

Query: 121 CMAAVTIARRLVQKRTKVLRGLVPGGEFM-DEISLIEETLDYMSALQAQVDVMRFLATA 179
             AA   A+RLV++RT+ LR +VPGGE M +++ L++ETLDY+ +LQ QV+VMR +  A
Sbjct: 121 EEAAAK-AKRLVKRRTQGLRNVVPGGELMSNDVLLLQETLDYIVSLQTQVNVMRSIVDA 173

[Close]

BLAST of CsaV3_1G029460 vs. ExPASy Swiss-Prot
Match: Q9SKX1 (Transcription factor IBH1 OS=Arabidopsis thaliana OX=3702 GN=IBH1 PE=1 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 1.6e-04
Identity = 35/94 (37.23%), Postives = 49/94 (52.13%), Query Frame = 0


Query: 90  SNLKITRSSWSSGKIVKRSRRVWR--RRRRRNKCMAAVTIARRLVQKRTKVLRGLVPGGE 149
           S   + R+     KIV+ SRR W+   +RRR+   A V      V++  + LR LVPGG 
Sbjct: 68  SRALLRRADKDDNKIVRFSRRKWKISSKRRRSNQRAPV------VEEAAERLRNLVPGGG 127

Query: 150 FMDEISLIEETLDYMSALQAQVDVMRFLATAYNP 182
            M+   L+EET  Y+  L  QV VM+ L    +P
Sbjct: 128 GMETSKLMEETAHYIKCLSMQVKVMQCLVDGLSP 155

[Close]

BLAST of CsaV3_1G029460 vs. ExPASy Swiss-Prot
Match: Q7XR02 (Transcription factor IBH1 OS=Oryza sativa subsp. japonica OX=39947 GN=IBH1 PE=1 SV=2)

HSP 1 Score: 45.4 bits (106), Expect = 7.9e-04
Identity = 22/46 (47.83%), Postives = 32/46 (69.57%), Query Frame = 0


Query: 135 RTKVLRGLVPGGEFMDEISLIEETLDYMSALQAQVDVMRFLATAYN 181
           R + LR LVPGG  M+  SL+EET DY+ +L+AQV +M+ L   ++
Sbjct: 155 RAEALRRLVPGGAGMEYSSLLEETADYLRSLRAQVQLMQGLVDLFS 200

[Close]

BLAST of CsaV3_1G029460 vs. ExPASy TrEMBL
Match: A0A0A0LWQ3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G294080 PE=4 SV=1)

HSP 1 Score: 352.1 bits (902), Expect = 1.5e-93
Identity = 185/185 (100.00%), Postives = 185/185 (100.00%), Query Frame = 0


Query: 1   MQNSNSLKQEFFKKWMMGLQIYTTTNENMTVTERKTAIKLSADIALASSRNCATRWSRAV 60
           MQNSNSLKQEFFKKWMMGLQIYTTTNENMTVTERKTAIKLSADIALASSRNCATRWSRAV
Sbjct: 1   MQNSNSLKQEFFKKWMMGLQIYTTTNENMTVTERKTAIKLSADIALASSRNCATRWSRAV 60

Query: 61  IARSSVDNRSCFVANGVLGRGLCERVKQISNLKITRSSWSSGKIVKRSRRVWRRRRRRNK 120
           IARSSVDNRSCFVANGVLGRGLCERVKQISNLKITRSSWSSGKIVKRSRRVWRRRRRRNK
Sbjct: 61  IARSSVDNRSCFVANGVLGRGLCERVKQISNLKITRSSWSSGKIVKRSRRVWRRRRRRNK 120

Query: 121 CMAAVTIARRLVQKRTKVLRGLVPGGEFMDEISLIEETLDYMSALQAQVDVMRFLATAYN 180
           CMAAVTIARRLVQKRTKVLRGLVPGGEFMDEISLIEETLDYMSALQAQVDVMRFLATAYN
Sbjct: 121 CMAAVTIARRLVQKRTKVLRGLVPGGEFMDEISLIEETLDYMSALQAQVDVMRFLATAYN 180

Query: 181 PSSSS 186
           PSSSS
Sbjct: 181 PSSSS 185

[Close]

BLAST of CsaV3_1G029460 vs. ExPASy TrEMBL
Match: A0A1S3B8V1 (uncharacterized protein LOC103487305 OS=Cucumis melo OX=3656 GN=LOC103487305 PE=4 SV=1)

HSP 1 Score: 340.9 bits (873), Expect = 3.4e-90
Identity = 179/185 (96.76%), Postives = 181/185 (97.84%), Query Frame = 0


Query: 1   MQNSNSLKQEFFKKWMMGLQIYTTTNENMTVTERKTAIKLSADIALASSRNCATRWSRAV 60
           MQN NSLKQEF KKWMMGLQIYTTTNENMTV ERKTAIKLSADIALASSRNCATRWSRAV
Sbjct: 1   MQNPNSLKQEFLKKWMMGLQIYTTTNENMTVAERKTAIKLSADIALASSRNCATRWSRAV 60

Query: 61  IARSSVDNRSCFVANGVLGRGLCERVKQISNLKITRSSWSSGKIVKRSRRVWRRRRRRNK 120
           IARSSVDNRSC VANGVLGRGLCERVKQISNLKITRSSWSSGKIVKRSRRVWRRRRRRNK
Sbjct: 61  IARSSVDNRSCLVANGVLGRGLCERVKQISNLKITRSSWSSGKIVKRSRRVWRRRRRRNK 120

Query: 121 CMAAVTIARRLVQKRTKVLRGLVPGGEFMDEISLIEETLDYMSALQAQVDVMRFLATAYN 180
           CMAAVTIARRLVQ+RTKVLRGLVPGGEFMDEISLIEETLDYMSALQAQVDVMRFLA+AYN
Sbjct: 121 CMAAVTIARRLVQRRTKVLRGLVPGGEFMDEISLIEETLDYMSALQAQVDVMRFLASAYN 180

Query: 181 PSSSS 186
           PSSSS
Sbjct: 181 PSSSS 185

[Close]

BLAST of CsaV3_1G029460 vs. ExPASy TrEMBL
Match: A0A5D3BAB1 (Transcription factor IBH1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold271G00110 PE=4 SV=1)

HSP 1 Score: 291.6 bits (745), Expect = 2.4e-75
Identity = 155/157 (98.73%), Postives = 156/157 (99.36%), Query Frame = 0


Query: 29  MTVTERKTAIKLSADIALASSRNCATRWSRAVIARSSVDNRSCFVANGVLGRGLCERVKQ 88
           MTVTERKTAIKLSADIALASSRNCATRWSRAVIARSSVDNRSC VANGVLGRGLCERVKQ
Sbjct: 1   MTVTERKTAIKLSADIALASSRNCATRWSRAVIARSSVDNRSCLVANGVLGRGLCERVKQ 60

Query: 89  ISNLKITRSSWSSGKIVKRSRRVWRRRRRRNKCMAAVTIARRLVQKRTKVLRGLVPGGEF 148
           ISNLKITRSSWSSGKIVKRSRRVWRRRRRRNKCMAAVTIARRLVQKRTKVLRGLVPGGEF
Sbjct: 61  ISNLKITRSSWSSGKIVKRSRRVWRRRRRRNKCMAAVTIARRLVQKRTKVLRGLVPGGEF 120

Query: 149 MDEISLIEETLDYMSALQAQVDVMRFLATAYNPSSSS 186
           MDEISLIEETLDYMSALQAQVDVMRFLA+AYNPSSSS
Sbjct: 121 MDEISLIEETLDYMSALQAQVDVMRFLASAYNPSSSS 157

[Close]

BLAST of CsaV3_1G029460 vs. ExPASy TrEMBL
Match: A0A5A7SVT7 (Transcription factor IBH1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold57G002130 PE=4 SV=1)

HSP 1 Score: 288.5 bits (737), Expect = 2.0e-74
Identity = 153/157 (97.45%), Postives = 155/157 (98.73%), Query Frame = 0


Query: 29  MTVTERKTAIKLSADIALASSRNCATRWSRAVIARSSVDNRSCFVANGVLGRGLCERVKQ 88
           MTV ERKTAIKLSADIALASSRNCATRWSRAVIARSSVDNRSC VANGVLGRGLCERVKQ
Sbjct: 1   MTVAERKTAIKLSADIALASSRNCATRWSRAVIARSSVDNRSCLVANGVLGRGLCERVKQ 60

Query: 89  ISNLKITRSSWSSGKIVKRSRRVWRRRRRRNKCMAAVTIARRLVQKRTKVLRGLVPGGEF 148
           ISNLKITRSSWSSGKIVKRSRRVWRRRRRRNKCMAAVTIARRLVQ+RTKVLRGLVPGGEF
Sbjct: 61  ISNLKITRSSWSSGKIVKRSRRVWRRRRRRNKCMAAVTIARRLVQRRTKVLRGLVPGGEF 120

Query: 149 MDEISLIEETLDYMSALQAQVDVMRFLATAYNPSSSS 186
           MDEISLIEETLDYMSALQAQVDVMRFLA+AYNPSSSS
Sbjct: 121 MDEISLIEETLDYMSALQAQVDVMRFLASAYNPSSSS 157

[Close]

BLAST of CsaV3_1G029460 vs. ExPASy TrEMBL
Match: A0A6J1JMR3 (transcription factor IBH1-like 1 OS=Cucurbita maxima OX=3661 GN=LOC111485792 PE=4 SV=1)

HSP 1 Score: 241.5 bits (615), Expect = 2.8e-60
Identity = 134/177 (75.71%), Postives = 152/177 (85.88%), Query Frame = 0


Query: 1   MQNSNSLKQEFFKKWMMGLQIYTTTNENMTVTERKTAIKLSADIALASSRNCATRWSRAV 60
           M+N +SLK++F KKW+MGLQIYTTTN NMTV +RK AIKLSADIALASSRNCATRWSRAV
Sbjct: 1   MRNPSSLKRDFLKKWLMGLQIYTTTNRNMTVADRKRAIKLSADIALASSRNCATRWSRAV 60

Query: 61  IARSSVDNRSCFVANGVLGRGLCERVKQISNLKITRSSWSSGKIVKRSRRVWRRRRRRNK 120
           IA +SV + S  VANG+LGR +CER+KQ S+ KITRSSWSSGKI+KRSRRV RR++ R  
Sbjct: 61  IAGTSVHDGSFLVANGLLGRAVCERIKQ-SSSKITRSSWSSGKILKRSRRVGRRKKCRKP 120

Query: 121 CMAAVTIARRLVQKRTKVLRGLVPGGEFMDEISLIEETLDYMSALQAQVDVMRFLAT 178
             AA  IARRLVQKRT+ LRGLVPGGEFMDE+SLIEETLDY+ ALQ QVDVMR LAT
Sbjct: 121 --AAEWIARRLVQKRTRTLRGLVPGGEFMDEVSLIEETLDYILALQTQVDVMRCLAT 174

[Close]

BLAST of CsaV3_1G029460 vs. TAIR 10
Match: AT4G30410.2 (sequence-specific DNA binding transcription factors )

HSP 1 Score: 122.9 bits (307), Expect = 2.8e-28
Identity = 77/179 (43.02%), Postives = 122/179 (68.16%), Query Frame = 0


Query: 1   MQNSNSLKQEFFKKWMMGLQIYTTTNENMTVTERKTAIKLSADIALASSRNCATRWSRAV 60
           MQ ++S+ +EF KKW MGLQI+  + +N +V ERK AIKLSAD+A+AS R   T WSRA+
Sbjct: 1   MQPTSSMNEEFLKKWQMGLQIFRPSIDNTSVHERKKAIKLSADVAMASLRKGTTCWSRAL 60

Query: 61  IARSSVDNRSCFVANGVLGRGLCERVKQISNLKITRSSWSSGKIVKRSRRVWRRRRRRNK 120
           I +++ ++   F+   +L  G+  + + + N K+ + +    KIV+RS+++ RR+ +   
Sbjct: 61  IEKTATEDN--FLVRQMLS-GI--KAETLINKKLPKKTVCHRKIVRRSKKILRRKSKSAS 120

Query: 121 CMAAVTIARRLVQKRTKVLRGLVPGGEFM-DEISLIEETLDYMSALQAQVDVMRFLATA 179
             AA   A+RLV++RT+ LR +VPGGE M +++ L++ETLDY+ +LQ QV+VMR +  A
Sbjct: 121 EEAAAK-AKRLVKRRTQGLRNVVPGGELMSNDVLLLQETLDYIVSLQTQVNVMRSIVDA 173

[Close]

BLAST of CsaV3_1G029460 vs. TAIR 10
Match: AT4G30410.1 (sequence-specific DNA binding transcription factors )

HSP 1 Score: 122.9 bits (307), Expect = 2.8e-28
Identity = 77/179 (43.02%), Postives = 122/179 (68.16%), Query Frame = 0


Query: 1   MQNSNSLKQEFFKKWMMGLQIYTTTNENMTVTERKTAIKLSADIALASSRNCATRWSRAV 60
           MQ ++S+ +EF KKW MGLQI+  + +N +V ERK AIKLSAD+A+AS R   T WSRA+
Sbjct: 1   MQPTSSMNEEFLKKWQMGLQIFRPSIDNTSVHERKKAIKLSADVAMASLRKGTTCWSRAL 60

Query: 61  IARSSVDNRSCFVANGVLGRGLCERVKQISNLKITRSSWSSGKIVKRSRRVWRRRRRRNK 120
           I +++ ++   F+   +L  G+  + + + N K+ + +    KIV+RS+++ RR+ +   
Sbjct: 61  IEKTATEDN--FLVRQMLS-GI--KAETLINKKLPKKTVCHRKIVRRSKKILRRKSKSAS 120

Query: 121 CMAAVTIARRLVQKRTKVLRGLVPGGEFM-DEISLIEETLDYMSALQAQVDVMRFLATA 179
             AA   A+RLV++RT+ LR +VPGGE M +++ L++ETLDY+ +LQ QV+VMR +  A
Sbjct: 121 EEAAAK-AKRLVKRRTQGLRNVVPGGELMSNDVLLLQETLDYIVSLQTQVNVMRSIVDA 173

[Close]

BLAST of CsaV3_1G029460 vs. TAIR 10
Match: AT5G57780.1 (EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: sequence-specific DNA binding transcription factors (TAIR:AT4G30410.1); Has 123 Blast hits to 123 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 123; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 92.4 bits (228), Expect = 4.0e-19
Identity = 74/181 (40.88%), Postives = 106/181 (58.56%), Query Frame = 0


Query: 1   MQNSNSLKQEFFKKWMMGLQIYTTTNEN-MTVTERKTAIKLSADIALASSRNCATRWSRA 60
           M   N +KQEF KKW+  L +  ++ E+ + VTERK AI+LS+D+A+A++RN +T WSRA
Sbjct: 2   MNTYNMVKQEFIKKWINTLHMLDSSIEHPLNVTERKNAIRLSSDLAMAAARNGSTVWSRA 61

Query: 61  VIARSSVDNRSCFVANGVLGRGLCERVKQISNLKITRSSWSSGKIVKRSRRVWRRR---R 120
           +I+RS   N++   AN  + R                      +I+K++R   + R    
Sbjct: 62  LISRSG--NKT---ANKPMAR----------------------RILKKARNRMKNRCNIL 121

Query: 121 RRNKCMAAVTIARRLVQKRTKVLRGLVPGGEFMDEIS-LIEETLDYMSALQAQVDVMRFL 177
           RRN    A T     V+KRT +L+ LVPGGE +D+   LI ETLDY+  L+AQVDVMR +
Sbjct: 122 RRNGNFTAKT----WVRKRTDLLKSLVPGGELIDDKDYLIRETLDYIVYLRAQVDVMRTV 151

[Close]

BLAST of CsaV3_1G029460 vs. TAIR 10
Match: AT2G43060.1 (ILI1 binding bHLH 1 )

HSP 1 Score: 47.8 bits (112), Expect = 1.1e-05
Identity = 35/94 (37.23%), Postives = 49/94 (52.13%), Query Frame = 0


Query: 90  SNLKITRSSWSSGKIVKRSRRVWR--RRRRRNKCMAAVTIARRLVQKRTKVLRGLVPGGE 149
           S   + R+     KIV+ SRR W+   +RRR+   A V      V++  + LR LVPGG 
Sbjct: 68  SRALLRRADKDDNKIVRFSRRKWKISSKRRRSNQRAPV------VEEAAERLRNLVPGGG 127

Query: 150 FMDEISLIEETLDYMSALQAQVDVMRFLATAYNP 182
            M+   L+EET  Y+  L  QV VM+ L    +P
Sbjct: 128 GMETSKLMEETAHYIKCLSMQVKVMQCLVDGLSP 155

The following BLAST results are available for this feature:

BLAST of CsaV3_1G029460 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004149880.1	3.0e-93	100.00	transcription factor IBH1-like 1 [Cucumis sativus] >KGN65277.1 hypothetical prot...	[more]
XP_008443801.1	7.0e-90	96.76	PREDICTED: uncharacterized protein LOC103487305 [Cucumis melo]	[more]
TYJ95949.1	4.9e-75	98.73	transcription factor IBH1-like [Cucumis melo var. makuwa]	[more]
KAA0035130.1	4.1e-74	97.45	transcription factor IBH1-like [Cucumis melo var. makuwa]	[more]
XP_038879866.1	4.3e-71	82.80	transcription factor IBH1-like 1 [Benincasa hispida]	[more]

BLAST of CsaV3_1G029460 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M0B9	3.9e-27	43.02	Transcription factor IBH1-like 1 OS=Arabidopsis thaliana OX=3702 GN=IBL1 PE=1 SV...	[more]
Q9SKX1	1.6e-04	37.23	Transcription factor IBH1 OS=Arabidopsis thaliana OX=3702 GN=IBH1 PE=1 SV=1	[more]
Q7XR02	7.9e-04	47.83	Transcription factor IBH1 OS=Oryza sativa subsp. japonica OX=39947 GN=IBH1 PE=1 ...	[more]

BLAST of CsaV3_1G029460 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LWQ3	1.5e-93	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G294080 PE=4 SV=1	[more]
A0A1S3B8V1	3.4e-90	96.76	uncharacterized protein LOC103487305 OS=Cucumis melo OX=3656 GN=LOC103487305 PE=...	[more]
A0A5D3BAB1	2.4e-75	98.73	Transcription factor IBH1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A5A7SVT7	2.0e-74	97.45	Transcription factor IBH1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s...	[more]
A0A6J1JMR3	2.8e-60	75.71	transcription factor IBH1-like 1 OS=Cucurbita maxima OX=3661 GN=LOC111485792 PE=...	[more]

BLAST of CsaV3_1G029460 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G30410.2	2.8e-28	43.02	sequence-specific DNA binding transcription factors	[more]
AT4G30410.1	2.8e-28	43.02	sequence-specific DNA binding transcription factors	[more]
AT5G57780.1	4.0e-19	40.88	EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arab...	[more]
AT2G43060.1	1.1e-05	37.23	ILI1 binding bHLH 1	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33124:SF5	TRANSCRIPTION FACTOR IBH1-LIKE 1	coord: 4..178
IPR044660	Transcription factor IBH1-like	PANTHER	PTHR33124	TRANSCRIPTION FACTOR IBH1-LIKE 1	coord: 4..178
IPR044549	Transcription factor IBH1-like, bHLH domain	CDD	cd11444	bHLH_AtIBH1_like	coord: 130..176 e-value: 1.07828E-11 score: 55.7064

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_1G029460.1	CsaV3_1G029460.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated